Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00318 * 2 1 4 4 H 1.48499 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47135 * 300.00020 * 3 2 1 6 6 H 1.48499 * 109.46820 * 59.99558 * 3 2 1 7 7 C 1.38817 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00385 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99661 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46974 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.84949 * 45.33483 * 11 10 9 13 13 C 1.53781 * 113.61707 * 176.53042 * 11 10 9 14 14 C 1.53777 * 87.08336 * 140.06298 * 13 11 10 15 15 H 1.08996 * 113.61474 * 220.01758 * 14 13 11 16 16 N 1.46500 * 113.61088 * 89.11940 * 14 13 11 17 17 C 1.34772 * 120.00149 * 155.00452 * 16 14 13 18 18 O 1.21604 * 119.99869 * 359.97438 * 17 16 14 19 19 C 1.47422 * 120.00165 * 179.97438 * 17 16 14 20 20 C 1.41368 * 126.40778 * 359.68649 * 19 17 16 21 21 N 1.30444 * 108.07497 * 179.81489 * 20 19 17 22 22 N 1.39942 * 108.91786 * 0.44795 * 21 20 19 23 23 C 1.39912 * 125.77918 * 179.69370 * 22 21 20 24 24 C 1.39323 * 120.85740 * 179.74177 * 23 22 21 25 25 C 1.38012 * 119.07831 * 179.72923 * 24 23 22 26 26 N 1.31932 * 120.83369 * 0.55242 * 25 24 23 27 27 C 1.31943 * 121.88396 * 359.72056 * 26 25 24 28 28 C 1.37999 * 120.83433 * 359.97438 * 27 26 25 29 29 C 1.34599 * 108.44678 * 359.70657 * 22 21 20 30 30 C 1.53775 * 87.07992 * 334.56762 * 14 13 11 31 31 H 0.97001 * 119.99773 * 0.02562 * 1 2 3 32 32 H 0.96991 * 120.00035 * 0.02562 * 9 7 2 33 33 H 1.09001 * 109.46950 * 60.00207 * 10 9 7 34 34 H 1.08992 * 109.47264 * 300.00101 * 10 9 7 35 35 H 1.08997 * 113.61673 * 254.61847 * 13 11 10 36 36 H 1.09005 * 113.61396 * 25.51675 * 13 11 10 37 37 H 0.96999 * 119.99703 * 334.99353 * 16 14 13 38 38 H 1.07995 * 125.96046 * 0.02562 * 20 19 17 39 39 H 1.08000 * 120.46204 * 359.97438 * 24 23 22 40 40 H 1.07996 * 119.58317 * 180.25529 * 25 24 23 41 41 H 1.08004 * 119.58292 * 180.02562 * 27 26 25 42 42 H 1.08003 * 120.46258 * 180.02562 * 28 27 26 43 43 H 1.07998 * 126.31462 * 179.97438 * 29 22 21 44 44 H 1.08993 * 113.61636 * 270.87622 * 30 14 13 45 45 H 1.09008 * 113.61006 * 139.97865 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.2523 -4.6824 -0.7169 13 6 1.7324 -6.2019 -0.0876 14 6 0.6843 -6.6846 0.9289 15 1 1.0864 -7.3618 1.6824 16 7 -0.5457 -7.1854 0.3104 17 6 -1.3172 -8.0737 0.9678 18 8 -0.9921 -8.4598 2.0741 19 6 -2.5553 -8.5771 0.3457 20 6 -3.0628 -8.2174 -0.9238 21 7 -4.1717 -8.8763 -1.1179 22 7 -4.4302 -9.6703 0.0051 23 6 -5.5326 -10.5153 0.1734 24 6 -5.6861 -11.2668 1.3365 25 6 -6.7906 -12.0841 1.4661 26 7 -7.6876 -12.1667 0.5022 27 6 -7.5747 -11.4753 -0.6159 28 6 -6.5026 -10.6308 -0.8202 29 6 -3.4389 -9.4834 0.8962 30 6 0.5859 -5.2248 1.4021 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 -0.0023 33 1 2.6839 -3.7149 0.8889 34 1 2.6853 -3.7141 -0.8910 35 1 1.6401 -6.6719 -1.0666 36 1 2.7525 -6.2179 0.2962 37 1 -0.8049 -6.8775 -0.5721 38 1 -2.6095 -7.5214 -1.6140 39 1 -4.9529 -11.2075 2.1273 40 1 -6.9197 -12.6670 2.3660 41 1 -8.3314 -11.5710 -1.3807 42 1 -6.4164 -10.0674 -1.7376 43 1 -3.3512 -9.9550 1.8638 44 1 1.2923 -4.9737 2.1932 45 1 -0.4323 -4.9061 1.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725366408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 94.182870 kcal Electronic energy + Delta-G solvation = -27349.152572 eV Core-core repulsion = 23368.617054 eV Total energy + Delta-G solvation = -3980.535518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.96879 -41.22482 -40.78863 -39.23350 -36.31504 -35.59918 -34.35982 -32.80488 -32.60650 -31.60145 -31.10545 -28.50212 -26.57699 -26.01057 -25.04784 -24.95104 -23.65822 -22.83397 -22.18231 -21.27803 -20.23762 -19.90791 -19.03617 -17.91657 -17.20092 -17.09397 -16.85629 -16.82749 -16.64372 -16.22714 -15.89384 -15.73536 -15.52370 -15.36229 -15.08614 -14.83228 -14.76917 -14.74623 -14.38119 -13.97829 -13.64532 -13.33994 -13.10608 -12.95950 -12.89785 -12.69963 -12.29691 -12.12845 -12.11259 -11.91422 -11.68984 -11.31500 -11.11602 -11.06237 -10.83732 -10.70265 -10.57218 -10.33251 -10.06595 -9.64715 -8.95671 -7.94125 -5.21802 -0.56407 -0.00461 0.67440 0.92759 1.06896 1.47713 1.48352 1.58513 2.16338 2.31545 2.57002 2.71246 3.11126 3.39337 3.42300 3.46959 3.63443 3.64674 3.69761 3.79691 3.87213 3.98960 4.00202 4.01102 4.13498 4.37321 4.38024 4.43851 4.61439 4.64929 4.74852 4.81590 4.86186 4.90465 4.95304 4.97594 5.03712 5.20017 5.21560 5.31948 5.40920 5.41292 5.51425 5.72125 5.73985 6.21989 6.29104 6.56858 6.86197 7.22134 7.35114 8.14060 8.35882 9.29660 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.001717 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.948154 B =16300.572627 C =17152.339243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.158 3.842 11 C -0.112 4.112 12 H 0.088 0.912 13 C -0.116 4.116 14 C 0.129 3.871 15 H 0.098 0.902 16 N -0.694 5.694 17 C 0.599 3.401 18 O -0.584 6.584 19 C -0.291 4.291 20 C 0.105 3.895 21 N -0.309 5.309 22 N -0.321 5.321 23 C 0.177 3.823 24 C -0.191 4.191 25 C 0.127 3.873 26 N -0.513 5.513 27 C 0.123 3.877 28 C -0.179 4.179 29 C 0.134 3.866 30 C -0.144 4.144 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.020 0.980 34 H 0.022 0.978 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.413 0.587 38 H 0.228 0.772 39 H 0.167 0.833 40 H 0.197 0.803 41 H 0.190 0.810 42 H 0.150 0.850 43 H 0.214 0.786 44 H 0.084 0.916 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 -28.466 -1.008 30.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.130 4.130 12 H 0.106 0.894 13 C -0.154 4.154 14 C 0.024 3.976 15 H 0.116 0.884 16 N -0.344 5.344 17 C 0.387 3.613 18 O -0.465 6.465 19 C -0.305 4.305 20 C -0.085 4.085 21 N -0.126 5.126 22 N -0.093 5.093 23 C 0.077 3.923 24 C -0.213 4.213 25 C -0.030 4.030 26 N -0.223 5.223 27 C -0.033 4.033 28 C -0.200 4.200 29 C -0.013 4.013 30 C -0.183 4.183 31 H 0.059 0.941 32 H 0.205 0.795 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.250 0.750 38 H 0.244 0.756 39 H 0.185 0.815 40 H 0.213 0.787 41 H 0.206 0.794 42 H 0.168 0.832 43 H 0.231 0.769 44 H 0.103 0.897 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.241 -29.463 -0.944 31.919 hybrid contribution 1.272 2.385 0.081 2.704 sum -10.970 -27.078 -0.863 29.228 Atomic orbital electron populations 1.69820 1.06595 1.25883 1.59814 1.25560 0.96408 1.01093 1.03958 0.85085 0.78293 0.79871 0.76600 1.18980 1.22008 1.22234 1.19715 0.91543 0.85566 1.40719 0.90675 1.42583 1.05609 1.01277 1.89248 1.20842 0.93849 0.84582 0.97487 1.22696 0.98486 0.94323 0.97522 0.89417 1.23229 0.98714 0.93403 1.00072 1.21754 0.85017 0.94156 0.96717 0.88440 1.45339 1.23677 1.43933 1.21450 1.17303 0.82086 0.77890 0.84010 1.90762 1.73687 1.60824 1.21219 1.20294 1.01243 1.09870 0.99064 1.24812 0.91385 0.96759 0.95521 1.77268 1.19383 1.09631 1.06303 1.45701 1.17402 1.32806 1.13377 1.18191 0.86230 0.91132 0.96712 1.22244 1.02655 0.99134 0.97313 1.23224 0.87576 0.94186 0.97974 1.67791 1.29604 1.22688 1.02186 1.23157 0.95626 0.89652 0.94885 1.22080 0.95023 1.02550 1.00396 1.23435 0.86193 0.95332 0.96327 1.23423 1.01182 0.96157 0.97495 0.94114 0.79542 0.96240 0.96019 0.88790 0.87574 0.74994 0.75591 0.81534 0.78673 0.79354 0.83231 0.76907 0.89750 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.70 13.06 21.65 0.28 -59.41 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -37.58 5.60 -343.45 -1.92 -39.50 16 10 C 0.16 6.05 6.09 86.38 0.53 6.57 16 11 C -0.11 -3.17 3.63 -10.27 -0.04 -3.21 16 12 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.12 -2.33 7.39 31.12 0.23 -2.10 16 14 C 0.13 2.92 4.32 45.51 0.20 3.11 16 15 H 0.10 2.35 7.46 -2.39 -0.02 2.34 16 16 N -0.69 -13.90 5.25 -443.33 -2.33 -16.23 16 17 C 0.60 14.01 7.81 86.66 0.68 14.68 16 18 O -0.58 -17.73 16.50 -4.04 -0.07 -17.80 16 19 C -0.29 -5.58 6.13 -20.14 -0.12 -5.70 16 20 C 0.10 1.72 11.50 85.67 0.99 2.70 16 21 N -0.31 -6.02 11.87 -56.23 -0.67 -6.69 16 22 N -0.32 -5.71 3.76 -185.65 -0.70 -6.41 16 23 C 0.18 2.71 6.73 38.38 0.26 2.97 16 24 C -0.19 -2.01 9.52 22.48 0.21 -1.80 16 25 C 0.13 1.26 11.17 84.62 0.95 2.21 16 26 N -0.51 -7.07 10.36 -196.06 -2.03 -9.10 16 27 C 0.12 1.46 11.17 84.62 0.95 2.41 16 28 C -0.18 -2.51 9.73 22.48 0.22 -2.29 16 29 C 0.13 2.29 10.64 84.22 0.90 3.18 16 30 C -0.14 -4.10 7.43 31.12 0.23 -3.87 16 31 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.37 20.05 7.67 -92.71 -0.71 19.34 16 33 H 0.02 0.76 7.88 -2.39 -0.02 0.74 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.98 8.10 -2.38 -0.02 1.96 16 37 H 0.41 6.15 7.65 -92.71 -0.71 5.44 16 38 H 0.23 2.10 7.50 -2.91 -0.02 2.08 16 39 H 0.17 0.91 6.85 -2.91 -0.02 0.89 16 40 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.15 2.06 7.78 -2.91 -0.02 2.04 16 43 H 0.21 2.52 7.09 -2.91 -0.02 2.50 16 44 H 0.08 2.50 7.92 -2.39 -0.02 2.48 16 45 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -78.08 386.76 1.69 -76.40 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.38 Total: 28.37 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 7.47 Total: 2.01 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -7.37 Total: -137.35 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.07 Total: -17.80 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -78.08 1.69 -76.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725366408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.580 kcal (2) G-P(sol) polarization free energy of solvation -78.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds