Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99682 * 2 1 4 4 H 1.48498 * 109.47397 * 269.99751 * 3 2 1 5 5 H 1.48498 * 109.47461 * 30.00194 * 3 2 1 6 6 H 1.48501 * 109.47041 * 149.99998 * 3 2 1 7 7 C 1.38811 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99893 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99941 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46990 * 35.00663 * 10 9 7 12 12 C 1.52997 * 109.47064 * 155.00091 * 10 9 7 13 13 N 1.46501 * 109.47090 * 305.00034 * 12 10 9 14 14 C 1.34784 * 120.00149 * 179.97438 * 13 12 10 15 15 O 1.21581 * 119.99531 * 0.02562 * 14 13 12 16 16 C 1.47589 * 120.00033 * 180.02562 * 14 13 12 17 17 C 1.39977 * 120.59618 * 5.63707 * 16 14 13 18 18 C 1.38348 * 118.34635 * 180.02562 * 17 16 14 19 19 C 1.38391 * 119.45766 * 0.02562 * 18 17 16 20 20 N 1.31851 * 121.17998 * 359.97438 * 19 18 17 21 21 C 1.32254 * 121.79969 * 359.70197 * 20 19 18 22 22 N 1.39356 * 119.79665 * 180.31196 * 21 20 19 23 23 C 1.35938 * 126.10661 * 66.47893 * 22 21 20 24 24 C 1.35237 * 107.60289 * 179.87272 * 23 22 21 25 25 C 1.40011 * 107.97070 * 0.39286 * 24 23 22 26 26 N 1.30785 * 108.38273 * 359.75167 * 25 24 23 27 27 C 1.52996 * 109.47523 * 274.99953 * 10 9 7 28 28 C 1.53000 * 117.49794 * 128.74290 * 27 10 9 29 29 C 1.53009 * 117.49355 * 60.08821 * 27 10 9 30 30 H 0.96997 * 120.00495 * 359.97438 * 1 2 3 31 31 H 0.96995 * 119.99822 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47180 * 65.00069 * 12 10 9 33 33 H 1.08998 * 109.47659 * 185.00417 * 12 10 9 34 34 H 0.96999 * 120.00448 * 0.02562 * 13 12 10 35 35 H 1.07999 * 120.82700 * 359.97438 * 17 16 14 36 36 H 1.08003 * 120.27370 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.41516 * 180.02562 * 19 18 17 38 38 H 1.07994 * 126.19863 * 0.02620 * 23 22 21 39 39 H 1.08001 * 126.01919 * 180.14395 * 24 23 22 40 40 H 1.08002 * 125.81474 * 179.73881 * 25 24 23 41 41 H 1.08999 * 115.55289 * 274.41707 * 27 10 9 42 42 H 1.09000 * 117.50237 * 0.02562 * 28 27 10 43 43 H 1.09002 * 117.49657 * 145.02077 * 28 27 10 44 44 H 1.09003 * 117.49104 * 214.97864 * 29 27 10 45 45 H 1.08991 * 117.50165 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9688 -3.5504 0.5901 12 6 1.1810 -4.7520 0.6101 13 7 0.7344 -4.3354 1.9417 14 6 -0.0555 -5.1472 2.6723 15 8 -0.3969 -6.2255 2.2263 16 6 -0.5059 -4.7272 4.0135 17 6 -0.2191 -3.4433 4.4918 18 6 -0.6633 -3.0988 5.7559 19 6 -1.3705 -4.0235 6.5042 20 7 -1.6295 -5.2277 6.0339 21 6 -1.2336 -5.6056 4.8299 22 7 -1.5359 -6.8866 4.3719 23 6 -2.7774 -7.3660 4.0947 24 6 -2.6381 -8.6443 3.6760 25 6 -1.2748 -8.9623 3.7050 26 7 -0.6152 -7.9123 4.1207 27 6 2.4221 -4.0356 -1.4364 28 6 3.8823 -4.3890 -1.7255 29 6 3.3030 -3.0620 -2.2221 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 0.3135 -4.9200 -0.0280 33 1 1.7559 -5.6745 0.6920 34 1 1.0064 -3.4750 2.2974 35 1 0.3358 -2.7394 3.8893 36 1 -0.4597 -2.1163 6.1556 37 1 -1.7173 -3.7537 7.4908 38 1 -3.7063 -6.8234 4.1891 39 1 -3.4379 -9.3052 3.3762 40 1 -0.8416 -9.9129 3.4309 41 1 1.6543 -4.5775 -1.9886 42 1 4.5837 -4.3520 -0.8920 43 1 4.0752 -5.1632 -2.4682 44 1 3.1149 -2.9638 -3.2912 45 1 3.6229 -2.1516 -1.7154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731402631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 144.390785 kcal Electronic energy + Delta-G solvation = -29335.553222 eV Core-core repulsion = 25357.194883 eV Total energy + Delta-G solvation = -3978.358339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49750 -40.16588 -38.95580 -37.53000 -34.79410 -33.78567 -33.34483 -32.82623 -30.94821 -30.18239 -29.54575 -28.03661 -25.01787 -24.14405 -23.60510 -22.42009 -21.73726 -21.03039 -20.93186 -20.43904 -19.65598 -18.44384 -17.82039 -17.11779 -17.02365 -15.67017 -15.39759 -15.31971 -14.97976 -14.79424 -14.49910 -14.37122 -14.16298 -13.88214 -13.72456 -13.34635 -13.33356 -13.21098 -12.94251 -12.67249 -12.61168 -12.13563 -11.42846 -11.22624 -10.93224 -10.92546 -10.78376 -10.67275 -10.30877 -10.20847 -10.18847 -9.99948 -9.85741 -9.62590 -9.47970 -9.34843 -9.18029 -9.06154 -8.66918 -8.47302 -7.13611 -5.90054 -3.19976 0.32782 0.78532 2.00847 2.28825 2.90090 3.02316 3.30618 3.33514 3.39087 3.40817 3.61255 4.27131 4.35990 4.46783 4.52879 4.60027 4.60768 4.81812 5.00096 5.10670 5.16910 5.20898 5.40676 5.46691 5.54687 5.54929 5.69647 5.70745 5.77590 5.81514 5.84735 5.95152 6.02308 6.05716 6.11016 6.13746 6.34308 6.49714 6.54534 6.71768 6.74656 6.81819 6.92664 7.16714 7.43382 7.57430 7.79526 7.82738 8.26569 8.44925 9.39020 9.92727 10.29267 11.31538 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.003439 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.543566 B = 8138.928070 C =10010.026919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.056 0.944 12 C 0.123 3.877 13 N -0.706 5.706 14 C 0.553 3.447 15 O -0.518 6.518 16 C -0.155 4.155 17 C -0.029 4.029 18 C -0.168 4.168 19 C 0.136 3.864 20 N -0.490 5.490 21 C 0.404 3.596 22 N -0.320 5.320 23 C 0.075 3.925 24 C -0.262 4.262 25 C 0.050 3.950 26 N -0.249 5.249 27 C -0.159 4.159 28 C -0.196 4.196 29 C -0.155 4.155 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.407 0.593 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.184 0.816 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 -10.361 9.868 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.002 4.002 13 N -0.358 5.358 14 C 0.338 3.662 15 O -0.395 6.395 16 C -0.163 4.163 17 C -0.056 4.056 18 C -0.188 4.188 19 C -0.023 4.023 20 N -0.201 5.201 21 C 0.177 3.823 22 N -0.099 5.099 23 C -0.067 4.067 24 C -0.291 4.291 25 C -0.139 4.139 26 N -0.067 5.067 27 C -0.181 4.181 28 C -0.233 4.233 29 C -0.193 4.193 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.244 0.756 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.187 0.813 38 H 0.186 0.814 39 H 0.167 0.833 40 H 0.201 0.799 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.557 -10.981 10.373 15.186 hybrid contribution -0.167 1.791 -0.820 1.977 sum -1.724 -9.190 9.553 13.367 Atomic orbital electron populations 1.69655 1.05050 1.25742 1.57195 1.24708 0.95414 0.97532 1.02787 0.86280 0.78687 0.84075 0.77657 1.21699 1.21823 1.20762 1.19169 0.90861 0.83814 1.43128 0.91099 1.42467 1.05804 0.99419 1.88140 1.20063 0.94310 0.86066 0.91337 0.92652 1.21605 0.98637 0.97646 0.82279 1.45829 1.50401 1.21520 1.18049 1.17734 0.79663 0.84757 0.84092 1.90829 1.55949 1.21352 1.71366 1.21011 1.03275 0.95133 0.96876 1.22011 0.94223 0.94024 0.95342 1.22272 0.99362 1.02061 0.95093 1.22813 0.92972 0.86845 0.99664 1.67197 1.21972 1.19260 1.11697 1.17376 0.93738 0.82885 0.88330 1.45090 1.05111 1.08166 1.51542 1.22582 0.88832 0.95371 0.99926 1.21416 0.97260 0.96439 1.14029 1.23869 0.92934 0.97707 0.99368 1.77453 1.14404 0.94745 1.20099 1.23008 0.92242 1.03143 0.99703 1.22963 0.97219 0.99804 1.03361 1.22780 1.03349 0.94026 0.99107 0.93446 0.78079 0.91692 0.91438 0.75555 0.82633 0.83024 0.81252 0.81387 0.83340 0.79940 0.89125 0.89531 0.90047 0.90202 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.75 13.06 55.49 0.72 -25.02 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.24 -5.83 8.63 -15.06 -0.13 -5.96 16 8 H 0.07 1.70 6.91 -52.49 -0.36 1.34 16 9 N -0.72 -15.73 4.54 -53.43 -0.24 -15.97 16 10 C 0.19 3.47 2.70 -67.94 -0.18 3.29 16 11 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 12 C 0.12 2.07 5.21 -4.04 -0.02 2.05 16 13 N -0.71 -11.68 5.34 -61.33 -0.33 -12.00 16 14 C 0.55 9.67 7.76 -12.44 -0.10 9.57 16 15 O -0.52 -10.37 13.70 5.29 0.07 -10.30 16 16 C -0.15 -2.37 5.90 -104.67 -0.62 -2.99 16 17 C -0.03 -0.36 9.63 -38.89 -0.37 -0.73 16 18 C -0.17 -1.60 10.09 -39.48 -0.40 -2.00 16 19 C 0.14 1.34 11.17 -17.49 -0.20 1.15 16 20 N -0.49 -6.66 10.37 -12.03 -0.12 -6.78 16 21 C 0.40 6.30 7.06 -154.37 -1.09 5.21 16 22 N -0.32 -5.23 2.37 -11.89 -0.03 -5.26 16 23 C 0.08 1.05 11.47 -16.80 -0.19 0.86 16 24 C -0.26 -3.33 10.80 -39.99 -0.43 -3.76 16 25 C 0.05 0.70 12.02 -17.33 -0.21 0.49 16 26 N -0.25 -4.26 10.74 30.65 0.33 -3.93 16 27 C -0.16 -2.72 5.36 -90.62 -0.49 -3.21 16 28 C -0.20 -2.92 10.18 -26.69 -0.27 -3.20 16 29 C -0.16 -2.70 9.78 -26.69 -0.26 -2.96 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.31 7.80 -40.82 -0.32 8.99 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.41 6.55 6.27 -40.82 -0.26 6.30 16 35 H 0.16 1.81 6.55 -52.49 -0.34 1.46 16 36 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 42 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.10 2.02 6.23 -51.93 -0.32 1.70 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -32.29 383.19 -9.69 -41.98 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -5.79 Total: 18.27 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -5.05 Total: -2.47 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: 0.33 Total: -68.97 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.29 -9.69 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731402631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.376 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds