Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99682 * 2 1 4 4 H 1.48498 * 109.47397 * 269.99751 * 3 2 1 5 5 H 1.48498 * 109.47461 * 30.00194 * 3 2 1 6 6 H 1.48501 * 109.47041 * 149.99998 * 3 2 1 7 7 C 1.38811 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99893 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99941 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46990 * 35.00663 * 10 9 7 12 12 C 1.52997 * 109.47064 * 155.00091 * 10 9 7 13 13 N 1.46501 * 109.47090 * 305.00034 * 12 10 9 14 14 C 1.34784 * 120.00149 * 179.97438 * 13 12 10 15 15 O 1.21581 * 119.99531 * 0.02562 * 14 13 12 16 16 C 1.47589 * 120.00033 * 180.02562 * 14 13 12 17 17 C 1.39977 * 120.59618 * 5.63707 * 16 14 13 18 18 C 1.38348 * 118.34635 * 180.02562 * 17 16 14 19 19 C 1.38391 * 119.45766 * 0.02562 * 18 17 16 20 20 N 1.31851 * 121.17998 * 359.97438 * 19 18 17 21 21 C 1.32254 * 121.79969 * 359.70197 * 20 19 18 22 22 N 1.39356 * 119.79665 * 180.31196 * 21 20 19 23 23 C 1.35938 * 126.10661 * 66.47893 * 22 21 20 24 24 C 1.35237 * 107.60289 * 179.87272 * 23 22 21 25 25 C 1.40011 * 107.97070 * 0.39286 * 24 23 22 26 26 N 1.30785 * 108.38273 * 359.75167 * 25 24 23 27 27 C 1.52996 * 109.47523 * 274.99953 * 10 9 7 28 28 C 1.53000 * 117.49794 * 128.74290 * 27 10 9 29 29 C 1.53009 * 117.49355 * 60.08821 * 27 10 9 30 30 H 0.96997 * 120.00495 * 359.97438 * 1 2 3 31 31 H 0.96995 * 119.99822 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47180 * 65.00069 * 12 10 9 33 33 H 1.08998 * 109.47659 * 185.00417 * 12 10 9 34 34 H 0.96999 * 120.00448 * 0.02562 * 13 12 10 35 35 H 1.07999 * 120.82700 * 359.97438 * 17 16 14 36 36 H 1.08003 * 120.27370 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.41516 * 180.02562 * 19 18 17 38 38 H 1.07994 * 126.19863 * 0.02620 * 23 22 21 39 39 H 1.08001 * 126.01919 * 180.14395 * 24 23 22 40 40 H 1.08002 * 125.81474 * 179.73881 * 25 24 23 41 41 H 1.08999 * 115.55289 * 274.41707 * 27 10 9 42 42 H 1.09000 * 117.50237 * 0.02562 * 28 27 10 43 43 H 1.09002 * 117.49657 * 145.02077 * 28 27 10 44 44 H 1.09003 * 117.49104 * 214.97864 * 29 27 10 45 45 H 1.08991 * 117.50165 * 359.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9688 -3.5504 0.5901 12 6 1.1810 -4.7520 0.6101 13 7 0.7344 -4.3354 1.9417 14 6 -0.0555 -5.1472 2.6723 15 8 -0.3969 -6.2255 2.2263 16 6 -0.5059 -4.7272 4.0135 17 6 -0.2191 -3.4433 4.4918 18 6 -0.6633 -3.0988 5.7559 19 6 -1.3705 -4.0235 6.5042 20 7 -1.6295 -5.2277 6.0339 21 6 -1.2336 -5.6056 4.8299 22 7 -1.5359 -6.8866 4.3719 23 6 -2.7774 -7.3660 4.0947 24 6 -2.6381 -8.6443 3.6760 25 6 -1.2748 -8.9623 3.7050 26 7 -0.6152 -7.9123 4.1207 27 6 2.4221 -4.0356 -1.4364 28 6 3.8823 -4.3890 -1.7255 29 6 3.3030 -3.0620 -2.2221 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 0.3135 -4.9200 -0.0280 33 1 1.7559 -5.6745 0.6920 34 1 1.0064 -3.4750 2.2974 35 1 0.3358 -2.7394 3.8893 36 1 -0.4597 -2.1163 6.1556 37 1 -1.7173 -3.7537 7.4908 38 1 -3.7063 -6.8234 4.1891 39 1 -3.4379 -9.3052 3.3762 40 1 -0.8416 -9.9129 3.4309 41 1 1.6543 -4.5775 -1.9886 42 1 4.5837 -4.3520 -0.8920 43 1 4.0752 -5.1632 -2.4682 44 1 3.1149 -2.9638 -3.2912 45 1 3.6229 -2.1516 -1.7154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731402631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 124.618234 kcal Electronic energy + Delta-G solvation = -29336.410625 eV Core-core repulsion = 25357.194883 eV Total energy + Delta-G solvation = -3979.215741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52995 -41.22543 -40.20509 -38.96204 -36.18564 -35.28942 -34.52744 -33.93893 -32.59432 -31.23136 -30.61686 -29.56849 -26.24340 -25.35081 -25.03386 -23.80552 -23.03753 -22.05229 -22.00391 -21.73525 -21.05504 -19.59629 -19.24575 -18.57488 -18.09371 -16.91885 -16.69587 -16.55646 -16.31993 -16.09221 -15.75318 -15.69895 -15.23203 -15.21684 -15.00036 -14.85253 -14.61484 -14.33062 -14.05927 -13.68742 -13.63334 -13.60227 -12.99782 -12.91365 -12.67820 -12.43684 -12.27624 -11.98602 -11.73350 -11.72551 -11.36158 -11.20660 -11.08102 -11.01574 -10.88134 -10.78472 -10.55187 -10.26836 -10.00514 -9.49752 -9.00614 -7.87995 -5.16188 -0.66685 -0.14763 0.97904 1.31173 1.49957 1.52909 1.58710 1.76114 2.01441 2.04198 2.55140 2.58311 3.06476 3.34847 3.46516 3.49364 3.59692 3.71895 3.79556 3.88429 3.97636 4.07947 4.14596 4.19279 4.30901 4.32133 4.37090 4.54643 4.63592 4.65345 4.78569 4.81891 4.82776 4.88982 4.93767 5.11001 5.11980 5.14669 5.30129 5.38666 5.42505 5.47983 5.62358 5.77968 6.16031 6.30870 6.44446 6.53015 6.78211 7.12162 7.39736 8.08711 8.35792 9.34461 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011381 B = 0.003439 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.543566 B = 8138.928070 C =10010.026919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.064 4.064 3 Si 0.958 3.042 4 H -0.298 1.298 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.199 3.801 11 H 0.058 0.942 12 C 0.134 3.866 13 N -0.703 5.703 14 C 0.549 3.451 15 O -0.549 6.549 16 C -0.181 4.181 17 C -0.035 4.035 18 C -0.150 4.150 19 C 0.145 3.855 20 N -0.507 5.507 21 C 0.381 3.619 22 N -0.333 5.333 23 C 0.056 3.944 24 C -0.260 4.260 25 C 0.044 3.956 26 N -0.297 5.297 27 C -0.174 4.174 28 C -0.163 4.163 29 C -0.171 4.171 30 H 0.248 0.752 31 H 0.373 0.627 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.409 0.591 35 H 0.157 0.843 36 H 0.192 0.808 37 H 0.215 0.785 38 H 0.188 0.812 39 H 0.180 0.820 40 H 0.212 0.788 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -10.386 11.064 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.257 4.257 3 Si 0.789 3.211 4 H -0.226 1.226 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.090 3.910 11 H 0.076 0.924 12 C 0.009 3.991 13 N -0.355 5.355 14 C 0.336 3.664 15 O -0.428 6.428 16 C -0.189 4.189 17 C -0.062 4.062 18 C -0.169 4.169 19 C -0.014 4.014 20 N -0.218 5.218 21 C 0.155 3.845 22 N -0.112 5.112 23 C -0.086 4.086 24 C -0.289 4.289 25 C -0.144 4.144 26 N -0.116 5.116 27 C -0.196 4.196 28 C -0.201 4.201 29 C -0.208 4.208 30 H 0.057 0.943 31 H 0.205 0.795 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.247 0.753 35 H 0.175 0.825 36 H 0.209 0.791 37 H 0.232 0.768 38 H 0.205 0.795 39 H 0.197 0.803 40 H 0.228 0.772 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.781 -11.032 11.570 16.005 hybrid contribution -0.374 1.752 -1.138 2.122 sum -1.155 -9.279 10.432 14.009 Atomic orbital electron populations 1.69797 1.06347 1.25626 1.59783 1.25305 0.95983 1.00181 1.04210 0.85377 0.78006 0.80821 0.76945 1.22555 1.22663 1.19379 1.19443 0.91130 0.84496 1.40125 0.90533 1.42546 1.05247 1.00278 1.88099 1.20117 0.93967 0.84682 0.92219 0.92368 1.21443 0.97856 0.97493 0.82284 1.45785 1.50371 1.21519 1.17800 1.18140 0.79080 0.84278 0.84947 1.90793 1.57110 1.22615 1.72314 1.20912 1.05205 0.96711 0.96071 1.22156 0.94479 0.92848 0.96691 1.22710 0.97296 1.03483 0.93445 1.23663 0.91257 0.85451 1.00993 1.67291 1.22575 1.21046 1.10937 1.17609 0.94693 0.82994 0.89217 1.45255 1.05508 1.08397 1.52070 1.23134 0.89104 0.96264 1.00089 1.21834 0.97606 0.96407 1.13010 1.24482 0.93636 0.98098 0.98212 1.77353 1.16163 0.95979 1.22062 1.22912 0.93974 1.04038 0.98660 1.23033 0.95126 0.98410 1.03494 1.22735 1.04543 0.94257 0.99277 0.94330 0.79540 0.93167 0.90670 0.75318 0.82511 0.79052 0.76825 0.79495 0.80280 0.77173 0.89010 0.88595 0.87627 0.89595 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.38 13.06 21.65 0.28 -54.10 16 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 3 Si 0.96 42.75 29.55 68.60 2.03 44.78 16 4 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.22 -10.70 8.63 84.03 0.73 -9.98 16 8 H 0.08 3.60 6.91 -2.91 -0.02 3.58 16 9 N -0.72 -31.87 4.54 -322.95 -1.47 -33.34 16 10 C 0.20 7.11 2.70 44.99 0.12 7.23 16 11 H 0.06 2.07 7.84 -2.38 -0.02 2.05 16 12 C 0.13 4.57 5.21 86.38 0.45 5.02 16 13 N -0.70 -23.79 5.34 -466.22 -2.49 -26.28 16 14 C 0.55 19.87 7.76 86.71 0.67 20.54 16 15 O -0.55 -22.84 13.70 -3.97 -0.05 -22.89 16 16 C -0.18 -5.62 5.90 -19.89 -0.12 -5.74 16 17 C -0.04 -0.84 9.63 22.72 0.22 -0.62 16 18 C -0.15 -2.43 10.09 22.33 0.23 -2.20 16 19 C 0.14 2.45 11.17 84.73 0.95 3.40 16 20 N -0.51 -13.26 10.37 -191.96 -1.99 -15.25 16 21 C 0.38 12.03 7.06 133.27 0.94 12.97 16 22 N -0.33 -11.12 2.37 -191.54 -0.45 -11.57 16 23 C 0.06 1.57 11.47 83.36 0.96 2.53 16 24 C -0.26 -6.45 10.80 22.01 0.24 -6.22 16 25 C 0.04 1.22 12.02 85.28 1.02 2.25 16 26 N -0.30 -10.44 10.74 -56.96 -0.61 -11.05 16 27 C -0.17 -5.79 5.36 -10.79 -0.06 -5.84 16 28 C -0.16 -4.46 10.18 30.62 0.31 -4.15 16 29 C -0.17 -5.72 9.78 30.62 0.30 -5.42 16 30 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.37 18.40 7.80 -92.71 -0.72 17.68 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.41 13.40 6.27 -92.71 -0.58 12.82 16 35 H 0.16 3.59 6.55 -2.91 -0.02 3.57 16 36 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 38 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 40 H 0.21 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.09 3.03 8.11 -2.39 -0.02 3.01 16 42 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 43 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.08 3.14 6.23 -2.39 -0.01 3.13 16 Total: -1.00 -72.32 383.19 2.40 -69.92 By element: Atomic # 1 Polarization: 49.17 SS G_CDS: -0.26 Total: 48.91 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 7.42 Total: 10.89 kcal Atomic # 7 Polarization: -144.87 SS G_CDS: -6.73 Total: -151.60 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -72.32 2.40 -69.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731402631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.534 kcal (2) G-P(sol) polarization free energy of solvation -72.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds