Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86794 * 120.00061 * 2 1 4 4 H 1.48507 * 109.47083 * 269.99498 * 3 2 1 5 5 H 1.48506 * 109.47469 * 29.99520 * 3 2 1 6 6 H 1.48502 * 109.47290 * 149.99731 * 3 2 1 7 7 C 1.38799 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99506 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00430 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99990 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46732 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00257 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99832 * 179.97438 * 11 10 9 14 14 C 1.47180 * 121.03468 * 359.97438 * 13 11 10 15 15 C 1.53076 * 109.28594 * 233.30849 * 14 13 11 16 16 C 1.54233 * 110.02529 * 306.72401 * 15 14 13 17 17 C 1.52687 * 108.88148 * 60.22212 * 16 15 14 18 18 H 1.08995 * 109.07286 * 57.22400 * 17 16 15 19 19 C 1.52721 * 111.23106 * 177.94478 * 17 16 15 20 20 N 1.47069 * 108.88439 * 180.47228 * 19 17 16 21 21 C 1.46904 * 110.99850 * 174.41285 * 20 19 17 22 22 C 1.50702 * 109.47428 * 191.06733 * 21 20 19 23 23 N 1.34774 * 120.00178 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99498 * 359.97438 * 22 21 20 25 25 C 1.46714 * 111.82622 * 298.96697 * 20 19 17 26 26 C 1.53249 * 110.08814 * 60.35779 * 25 20 19 27 27 C 1.46597 * 121.03963 * 179.97438 * 13 11 10 28 28 H 1.08996 * 109.68230 * 244.29539 * 27 13 11 29 29 H 0.97000 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46875 * 60.00096 * 10 9 7 31 31 H 1.08996 * 109.47113 * 300.00212 * 10 9 7 32 32 H 1.08996 * 109.50489 * 353.25134 * 14 13 11 33 33 H 1.08999 * 109.50296 * 113.36259 * 14 13 11 34 34 H 1.09002 * 109.40258 * 66.74021 * 15 14 13 35 35 H 1.09002 * 109.40524 * 186.58058 * 15 14 13 36 36 H 1.08997 * 109.38266 * 300.53458 * 16 15 14 37 37 H 1.08997 * 109.82980 * 180.17295 * 16 15 14 38 38 H 1.08999 * 109.56748 * 60.65635 * 19 17 16 39 39 H 1.08994 * 109.57033 * 300.29561 * 19 17 16 40 40 H 1.09007 * 109.47441 * 311.06811 * 21 20 19 41 41 H 1.09005 * 109.47310 * 71.06206 * 21 20 19 42 42 H 0.97003 * 119.99907 * 359.97438 * 23 22 21 43 43 H 0.96991 * 119.99992 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.36371 * 300.17259 * 25 20 19 45 45 H 1.08998 * 109.26799 * 180.48756 * 25 20 19 46 46 H 1.09002 * 109.60466 * 61.22758 * 26 25 20 47 47 H 1.09000 * 109.60273 * 181.55599 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0022 14 6 4.2999 -6.1273 0.0026 15 6 4.9270 -6.9074 -1.1556 16 6 4.4959 -8.3868 -1.0906 17 6 2.9746 -8.4632 -1.1955 18 1 2.6567 -7.9812 -2.1200 19 6 2.4917 -9.9121 -1.1876 20 7 1.0256 -9.9258 -1.3019 21 6 0.5206 -11.2992 -1.4321 22 6 -0.9361 -11.2645 -1.8166 23 7 -1.6143 -12.4158 -1.9924 24 8 -1.4984 -10.2005 -1.9669 25 6 0.3843 -9.2342 -0.1781 26 6 0.8338 -7.7697 -0.1358 27 6 2.3549 -7.7251 0.0024 28 1 2.6518 -8.2195 0.9273 29 1 -0.4850 0.8401 -0.0004 30 1 3.1237 -3.7310 0.8925 31 1 3.1252 -3.7318 -0.8874 32 1 4.5103 -5.0647 -0.1183 33 1 4.7194 -6.4767 0.9460 34 1 4.5971 -6.4783 -2.1018 35 1 6.0132 -6.8445 -1.0885 36 1 4.8182 -8.8161 -0.1420 37 1 4.9466 -8.9398 -1.9147 38 1 2.7896 -10.3910 -0.2549 39 1 2.9287 -10.4472 -2.0306 40 1 1.0872 -11.8233 -2.2018 41 1 0.6330 -11.8194 -0.4808 42 1 -1.1647 -13.2669 -1.8718 43 1 -2.5519 -12.3935 -2.2396 44 1 0.6627 -9.7248 0.7546 45 1 -0.6980 -9.2768 -0.3000 46 1 0.5351 -7.2687 -1.0566 47 1 0.3745 -7.2707 0.7176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731467779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = -57.571286 kcal Electronic energy + Delta-G solvation = -28310.624539 eV Core-core repulsion = 24426.659668 eV Total energy + Delta-G solvation = -3883.964871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74466 -39.70133 -38.00002 -36.44380 -33.93192 -33.09431 -32.81584 -32.37992 -30.22456 -29.12803 -27.52127 -25.51798 -25.15127 -23.39788 -23.20789 -21.13830 -20.48710 -20.14982 -18.99795 -17.64989 -17.50757 -17.05985 -16.39918 -15.97328 -15.70149 -15.26500 -15.21818 -14.76824 -14.75355 -14.56785 -14.33819 -13.91914 -13.70684 -13.43932 -13.29166 -13.04111 -12.84539 -12.65650 -12.51392 -12.20951 -11.85306 -11.75620 -11.39727 -11.29695 -11.03168 -10.98629 -10.94124 -10.84626 -10.72219 -10.60487 -10.47310 -9.98402 -9.80233 -9.75329 -9.02244 -8.72351 -8.43178 -8.31209 -8.15724 -6.43948 -6.16997 -3.86877 2.43938 2.99230 3.05444 3.15921 3.25259 3.29089 3.33211 3.65263 3.79237 4.24619 4.47321 4.60245 4.62825 4.67280 4.85736 4.87765 4.92225 5.04869 5.10889 5.14972 5.17870 5.24851 5.28338 5.39550 5.47448 5.53003 5.57279 5.60170 5.64242 5.71843 5.83284 5.91595 5.95341 5.98871 6.09197 6.18201 6.20979 6.39246 6.52056 6.63164 6.76561 6.96074 6.98987 7.09820 7.63589 7.70154 8.07050 8.39554 8.69896 9.28081 10.90381 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.002662 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.991002 B =10514.594823 C =11913.590762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.506 6.506 13 N -0.616 5.616 14 C 0.108 3.892 15 C -0.134 4.134 16 C -0.110 4.110 17 C -0.100 4.100 18 H 0.086 0.914 19 C 0.070 3.930 20 N -0.525 5.525 21 C 0.037 3.963 22 C 0.512 3.488 23 N -0.862 5.862 24 O -0.513 6.513 25 C 0.047 3.953 26 C -0.099 4.099 27 C 0.153 3.847 28 H 0.061 0.939 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.398 0.602 43 H 0.402 0.598 44 H 0.022 0.978 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 -28.288 -1.704 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.323 3.677 12 O -0.380 6.380 13 N -0.352 5.352 14 C -0.015 4.015 15 C -0.173 4.173 16 C -0.148 4.148 17 C -0.120 4.120 18 H 0.104 0.896 19 C -0.058 4.058 20 N -0.250 5.250 21 C -0.094 4.094 22 C 0.296 3.704 23 N -0.427 5.427 24 O -0.387 6.387 25 C -0.080 4.080 26 C -0.137 4.137 27 C 0.050 3.950 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.226 0.774 43 H 0.232 0.768 44 H 0.041 0.959 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.537 -27.377 -2.158 28.229 hybrid contribution 2.205 0.281 0.631 2.310 sum 8.742 -27.096 -1.527 28.513 Atomic orbital electron populations 1.70027 1.05926 1.27383 1.46925 1.24990 0.95017 0.98985 0.94629 0.86183 0.79397 0.81669 0.78324 1.20292 1.20781 1.19734 1.22861 0.94858 0.91741 1.58804 0.91031 1.85411 1.04985 0.96230 1.96662 1.23583 1.06396 0.95711 1.04468 1.20277 0.86307 0.85948 0.75165 1.90734 1.15197 1.84507 1.47584 1.48087 1.06239 1.05363 1.75462 1.21695 0.80029 1.01516 0.98260 1.22078 1.00332 0.95375 0.99475 1.21647 0.94788 0.96511 1.01890 1.21619 0.94930 0.95062 1.00355 0.89602 1.22015 0.86824 0.96664 1.00276 1.61423 1.05085 1.13080 1.45373 1.21908 0.93327 0.92279 1.01933 1.20617 0.89229 0.83919 0.76681 1.43882 1.15411 1.08580 1.74845 1.90801 1.69888 1.29499 1.48464 1.22522 1.01124 0.95180 0.89196 1.22007 0.92514 0.93360 1.05818 1.21214 0.95691 0.81566 0.96561 0.92101 0.92225 0.89515 0.89472 0.89246 0.91736 0.91218 0.90709 0.91966 0.91548 0.94742 0.90466 0.87956 0.92066 0.77392 0.76766 0.95949 0.88703 0.89387 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.60 13.22 55.49 0.73 -25.87 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -15.46 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.15 4.52 36.01 0.16 -2.99 16 11 C 0.53 10.45 7.66 -10.98 -0.08 10.37 16 12 O -0.51 -11.55 11.57 5.56 0.06 -11.48 16 13 N -0.62 -9.17 2.97 -165.12 -0.49 -9.66 16 14 C 0.11 1.23 6.35 -3.63 -0.02 1.20 16 15 C -0.13 -1.23 6.08 -26.05 -0.16 -1.39 16 16 C -0.11 -0.92 5.36 -26.25 -0.14 -1.06 16 17 C -0.10 -1.08 2.14 -90.54 -0.19 -1.27 16 18 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 19 C 0.07 0.63 4.89 -3.88 -0.02 0.61 16 20 N -0.52 -5.88 4.36 -236.10 -1.03 -6.91 16 21 C 0.04 0.29 5.46 -4.97 -0.03 0.26 16 22 C 0.51 5.07 7.78 -10.99 -0.09 4.98 16 23 N -0.86 -4.64 8.87 31.22 0.28 -4.36 16 24 O -0.51 -7.95 15.17 5.56 0.08 -7.86 16 25 C 0.05 0.62 5.11 -3.80 -0.02 0.60 16 26 C -0.10 -1.57 3.83 -26.70 -0.10 -1.67 16 27 C 0.15 2.04 2.69 -67.59 -0.18 1.86 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.09 1.68 7.96 -51.92 -0.41 1.27 16 31 H 0.09 1.70 7.71 -51.92 -0.40 1.30 16 32 H 0.09 1.04 6.00 -51.93 -0.31 0.73 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 40 H 0.10 0.55 7.98 -51.92 -0.41 0.13 16 41 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.40 0.73 8.83 -40.82 -0.36 0.37 16 43 H 0.40 2.03 8.93 -40.82 -0.36 1.66 16 44 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 1.45 5.79 -51.93 -0.30 1.15 16 46 H 0.09 1.71 7.11 -51.93 -0.37 1.34 16 47 H 0.09 1.65 6.63 -51.93 -0.34 1.31 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -37.59 376.94 -10.06 -47.64 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.47 Total: 1.63 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -0.67 Total: -1.64 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.51 Total: -46.80 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.15 Total: -19.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.59 -10.06 -47.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731467779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.930 kcal (2) G-P(sol) polarization free energy of solvation -37.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds