Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86794 * 120.00061 * 2 1 4 4 H 1.48507 * 109.47083 * 269.99498 * 3 2 1 5 5 H 1.48506 * 109.47469 * 29.99520 * 3 2 1 6 6 H 1.48502 * 109.47290 * 149.99731 * 3 2 1 7 7 C 1.38799 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99506 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00430 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99990 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46732 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00257 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99832 * 179.97438 * 11 10 9 14 14 C 1.47180 * 121.03468 * 359.97438 * 13 11 10 15 15 C 1.53076 * 109.28594 * 233.30849 * 14 13 11 16 16 C 1.54233 * 110.02529 * 306.72401 * 15 14 13 17 17 C 1.52687 * 108.88148 * 60.22212 * 16 15 14 18 18 H 1.08995 * 109.07286 * 57.22400 * 17 16 15 19 19 C 1.52721 * 111.23106 * 177.94478 * 17 16 15 20 20 N 1.47069 * 108.88439 * 180.47228 * 19 17 16 21 21 C 1.46904 * 110.99850 * 174.41285 * 20 19 17 22 22 C 1.50702 * 109.47428 * 191.06733 * 21 20 19 23 23 N 1.34774 * 120.00178 * 180.02562 * 22 21 20 24 24 O 1.21280 * 119.99498 * 359.97438 * 22 21 20 25 25 C 1.46714 * 111.82622 * 298.96697 * 20 19 17 26 26 C 1.53249 * 110.08814 * 60.35779 * 25 20 19 27 27 C 1.46597 * 121.03963 * 179.97438 * 13 11 10 28 28 H 1.08996 * 109.68230 * 244.29539 * 27 13 11 29 29 H 0.97000 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46875 * 60.00096 * 10 9 7 31 31 H 1.08996 * 109.47113 * 300.00212 * 10 9 7 32 32 H 1.08996 * 109.50489 * 353.25134 * 14 13 11 33 33 H 1.08999 * 109.50296 * 113.36259 * 14 13 11 34 34 H 1.09002 * 109.40258 * 66.74021 * 15 14 13 35 35 H 1.09002 * 109.40524 * 186.58058 * 15 14 13 36 36 H 1.08997 * 109.38266 * 300.53458 * 16 15 14 37 37 H 1.08997 * 109.82980 * 180.17295 * 16 15 14 38 38 H 1.08999 * 109.56748 * 60.65635 * 19 17 16 39 39 H 1.08994 * 109.57033 * 300.29561 * 19 17 16 40 40 H 1.09007 * 109.47441 * 311.06811 * 21 20 19 41 41 H 1.09005 * 109.47310 * 71.06206 * 21 20 19 42 42 H 0.97003 * 119.99907 * 359.97438 * 23 22 21 43 43 H 0.96991 * 119.99992 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.36371 * 300.17259 * 25 20 19 45 45 H 1.08998 * 109.26799 * 180.48756 * 25 20 19 46 46 H 1.09002 * 109.60466 * 61.22758 * 26 25 20 47 47 H 1.09000 * 109.60273 * 181.55599 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0022 14 6 4.2999 -6.1273 0.0026 15 6 4.9270 -6.9074 -1.1556 16 6 4.4959 -8.3868 -1.0906 17 6 2.9746 -8.4632 -1.1955 18 1 2.6567 -7.9812 -2.1200 19 6 2.4917 -9.9121 -1.1876 20 7 1.0256 -9.9258 -1.3019 21 6 0.5206 -11.2992 -1.4321 22 6 -0.9361 -11.2645 -1.8166 23 7 -1.6143 -12.4158 -1.9924 24 8 -1.4984 -10.2005 -1.9669 25 6 0.3843 -9.2342 -0.1781 26 6 0.8338 -7.7697 -0.1358 27 6 2.3549 -7.7251 0.0024 28 1 2.6518 -8.2195 0.9273 29 1 -0.4850 0.8401 -0.0004 30 1 3.1237 -3.7310 0.8925 31 1 3.1252 -3.7318 -0.8874 32 1 4.5103 -5.0647 -0.1183 33 1 4.7194 -6.4767 0.9460 34 1 4.5971 -6.4783 -2.1018 35 1 6.0132 -6.8445 -1.0885 36 1 4.8182 -8.8161 -0.1420 37 1 4.9466 -8.9398 -1.9147 38 1 2.7896 -10.3910 -0.2549 39 1 2.9287 -10.4472 -2.0306 40 1 1.0872 -11.8233 -2.2018 41 1 0.6330 -11.8194 -0.4808 42 1 -1.1647 -13.2669 -1.8718 43 1 -2.5519 -12.3935 -2.2396 44 1 0.6627 -9.7248 0.7546 45 1 -0.6980 -9.2768 -0.3000 46 1 0.5351 -7.2687 -1.0566 47 1 0.3745 -7.2707 0.7176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731467779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -88.312498 kcal Electronic energy + Delta-G solvation = -28311.957578 eV Core-core repulsion = 24426.659668 eV Total energy + Delta-G solvation = -3885.297910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85061 -40.60644 -39.16423 -37.46584 -34.65002 -34.59931 -34.17536 -33.79810 -31.25483 -30.52951 -28.36339 -27.67504 -26.18437 -24.38282 -24.20218 -21.98579 -21.36345 -21.05518 -20.43904 -19.40953 -18.23828 -17.85194 -17.71885 -17.16656 -16.89073 -16.80889 -16.25268 -16.18549 -15.83800 -15.64603 -15.46283 -15.19326 -14.83687 -14.63551 -14.42537 -14.23478 -14.00504 -13.77237 -13.63244 -13.42393 -13.16790 -13.03311 -12.90011 -12.72479 -12.58761 -12.29502 -12.16726 -11.92824 -11.75632 -11.72097 -11.53250 -11.38937 -11.15230 -10.77520 -10.55451 -10.26293 -10.18279 -9.53570 -9.19175 -8.68432 -8.35294 -6.14059 1.24953 1.41629 1.45066 1.55783 1.61996 1.72251 2.10930 2.26866 2.45167 2.98468 3.06095 3.24617 3.55816 3.73211 3.80427 3.95654 4.02438 4.11083 4.16954 4.20451 4.24679 4.29105 4.34272 4.41905 4.42365 4.43347 4.49558 4.63586 4.73222 4.77343 4.83295 4.86462 5.03335 5.07013 5.10379 5.21050 5.28264 5.39974 5.40533 5.51631 5.72852 5.93950 6.03264 6.15743 6.18646 6.37067 6.59306 7.05250 7.22652 7.46764 8.74126 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.002662 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.991002 B =10514.594823 C =11913.590762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.155 6.155 10 C -0.121 4.121 11 C 0.528 3.472 12 O -0.553 6.553 13 N -0.605 5.605 14 C 0.097 3.903 15 C -0.131 4.131 16 C -0.102 4.102 17 C -0.093 4.093 18 H 0.050 0.950 19 C 0.074 3.926 20 N -0.552 5.552 21 C 0.040 3.960 22 C 0.504 3.496 23 N -0.839 5.839 24 O -0.584 6.584 25 C 0.062 3.938 26 C -0.090 4.090 27 C 0.151 3.849 28 H 0.085 0.915 29 H 0.271 0.729 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.092 0.908 42 H 0.419 0.581 43 H 0.404 0.596 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.232 -31.053 -1.436 33.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.072 5.928 10 C -0.272 4.272 11 C 0.316 3.684 12 O -0.431 6.431 13 N -0.339 5.339 14 C -0.024 4.024 15 C -0.169 4.169 16 C -0.140 4.140 17 C -0.113 4.113 18 H 0.069 0.931 19 C -0.054 4.054 20 N -0.278 5.278 21 C -0.090 4.090 22 C 0.289 3.711 23 N -0.404 5.404 24 O -0.463 6.463 25 C -0.066 4.066 26 C -0.129 4.129 27 C 0.048 3.952 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.155 0.845 41 H 0.110 0.890 42 H 0.251 0.749 43 H 0.235 0.765 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.024 -30.258 -1.894 32.259 hybrid contribution 0.818 0.965 0.525 1.370 sum 11.843 -29.293 -1.369 31.626 Atomic orbital electron populations 1.70205 1.08068 1.28606 1.48038 1.26182 0.95993 1.03449 0.93721 0.84922 0.78216 0.75805 0.78828 1.19281 1.20231 1.17990 1.23185 0.95284 0.91890 1.58861 0.89935 1.85637 1.10756 0.99367 1.96995 1.23378 1.03208 0.94755 1.05889 1.20136 0.86210 0.86490 0.75607 1.90748 1.17218 1.85074 1.50031 1.48125 1.07529 1.04994 1.73288 1.22080 0.77459 1.02038 1.00849 1.22085 1.01904 0.95649 0.97269 1.21647 0.92210 0.96048 1.04076 1.21582 0.96946 0.95835 0.96964 0.93124 1.22098 0.85182 0.95359 1.02717 1.61264 1.06609 1.15358 1.44543 1.22046 0.91799 0.90740 1.04451 1.21201 0.90402 0.83748 0.75771 1.43711 1.15469 1.08499 1.72742 1.90791 1.71406 1.32160 1.51902 1.22166 0.99614 0.93671 0.91178 1.21681 0.94831 0.94766 1.01596 1.21402 0.93777 0.80885 0.99132 0.89697 0.92011 0.87676 0.88066 0.89851 0.88950 0.93133 0.87573 0.89698 0.89211 0.92210 0.87727 0.84529 0.89048 0.74931 0.76518 0.93762 0.91736 0.94463 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.97 13.22 21.65 0.29 -57.68 16 2 C 0.01 0.65 5.49 84.86 0.47 1.11 16 3 Si 1.00 44.78 29.55 68.60 2.03 46.81 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.54 -32.19 9.50 67.95 0.65 -31.55 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 9 S -0.15 -9.07 20.57 -56.49 -1.16 -10.23 16 10 C -0.12 -5.21 4.52 71.24 0.32 -4.89 16 11 C 0.53 21.72 7.66 87.66 0.67 22.39 16 12 O -0.55 -27.65 11.57 -3.02 -0.03 -27.68 16 13 N -0.61 -17.96 2.97 -794.72 -2.36 -20.32 16 14 C 0.10 1.96 6.35 86.27 0.55 2.51 16 15 C -0.13 -1.96 6.08 31.04 0.19 -1.77 16 16 C -0.10 -1.24 5.36 30.91 0.17 -1.07 16 17 C -0.09 -1.82 2.14 -10.74 -0.02 -1.84 16 18 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 19 C 0.07 1.05 4.89 86.18 0.42 1.47 16 20 N -0.55 -11.66 4.36 -900.87 -3.93 -15.59 16 21 C 0.04 0.51 5.46 85.56 0.47 0.98 16 22 C 0.50 9.69 7.78 87.66 0.68 10.37 16 23 N -0.84 -7.74 8.87 -173.53 -1.54 -9.28 16 24 O -0.58 -19.29 15.17 -3.03 -0.05 -19.34 16 25 C 0.06 1.68 5.11 86.42 0.44 2.12 16 26 C -0.09 -3.11 3.83 30.61 0.12 -2.99 16 27 C 0.15 3.93 2.69 45.16 0.12 4.05 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 30 H 0.11 4.09 7.96 -2.40 -0.02 4.07 16 31 H 0.10 4.02 7.71 -2.40 -0.02 4.00 16 32 H 0.08 1.78 6.00 -2.39 -0.01 1.77 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 39 H 0.10 0.99 8.02 -2.39 -0.02 0.97 16 40 H 0.14 0.82 7.98 -2.38 -0.02 0.80 16 41 H 0.09 0.67 8.12 -2.38 -0.02 0.65 16 42 H 0.42 0.32 8.83 -92.71 -0.82 -0.50 16 43 H 0.40 3.78 8.93 -92.71 -0.83 2.95 16 44 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 45 H 0.06 2.15 5.79 -2.39 -0.01 2.14 16 46 H 0.04 1.62 7.11 -2.39 -0.02 1.61 16 47 H 0.05 2.24 6.63 -2.39 -0.02 2.22 16 Total: -1.00 -92.47 376.94 -2.18 -94.65 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.65 Total: 17.76 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 5.23 Total: 0.90 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -7.55 Total: -102.86 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.08 Total: -47.02 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.23 kcal Total: -92.47 -2.18 -94.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731467779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.338 kcal (2) G-P(sol) polarization free energy of solvation -92.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds