Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99810 * 2 1 4 4 H 1.48502 * 109.47191 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47176 * 120.00246 * 3 2 1 6 6 H 1.48503 * 109.46998 * 240.00317 * 3 2 1 7 7 C 1.38796 * 120.00176 * 180.27651 * 2 1 3 8 8 H 1.07995 * 120.00391 * 179.97438 * 7 2 1 9 9 S 1.76209 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99943 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46953 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99567 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99891 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99866 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47016 * 174.98960 * 14 13 11 16 16 H 1.09003 * 110.36832 * 57.22914 * 15 14 13 17 17 C 1.54383 * 110.41193 * 294.87800 * 15 14 13 18 18 C 1.54258 * 105.06037 * 217.36885 * 17 15 14 19 19 C 1.54374 * 105.06042 * 359.97438 * 18 17 15 20 20 N 1.48555 * 104.59641 * 23.85334 * 19 18 17 21 21 C 1.46903 * 111.00344 * 200.95743 * 20 19 18 22 22 C 1.50699 * 109.46829 * 279.55215 * 21 20 19 23 23 O 1.21278 * 120.00556 * 359.97438 * 22 21 20 24 24 N 1.34784 * 119.99764 * 179.97438 * 22 21 20 25 25 C 1.46505 * 120.00109 * 179.97438 * 24 22 21 26 26 C 1.52997 * 117.49919 * 223.62291 * 25 24 22 27 27 C 1.52997 * 117.49634 * 154.99647 * 25 24 22 28 28 H 0.96997 * 120.00682 * 359.71848 * 1 2 3 29 29 H 1.08999 * 109.46692 * 299.99574 * 10 9 7 30 30 H 1.08991 * 109.47194 * 59.99688 * 10 9 7 31 31 H 0.97001 * 119.99714 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46819 * 294.98894 * 14 13 11 33 33 H 1.08999 * 109.46787 * 54.98809 * 14 13 11 34 34 H 1.08992 * 110.32452 * 336.26942 * 17 15 14 35 35 H 1.08997 * 110.31801 * 98.47286 * 17 15 14 36 36 H 1.08998 * 110.32233 * 118.89656 * 18 17 15 37 37 H 1.09006 * 110.32146 * 241.00550 * 18 17 15 38 38 H 1.09005 * 110.41396 * 142.63102 * 19 18 17 39 39 H 1.09003 * 110.41478 * 264.95243 * 19 18 17 40 40 H 1.08997 * 109.46971 * 39.55071 * 21 20 19 41 41 H 1.08996 * 109.47134 * 159.55289 * 21 20 19 42 42 H 0.96999 * 119.99743 * 359.97438 * 24 22 21 43 43 H 1.09000 * 115.54455 * 9.33025 * 25 24 22 44 44 H 1.09001 * 117.49711 * 359.97438 * 26 25 24 45 45 H 1.08993 * 117.49876 * 145.02452 * 26 25 24 46 46 H 1.08999 * 117.49838 * 214.97630 * 27 25 24 47 47 H 1.08995 * 117.50234 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2020 -0.0058 8 1 3.0903 -1.2020 -0.0062 9 16 1.1293 -2.7280 -0.0125 10 6 2.5159 -3.8914 -0.0176 11 6 1.9874 -5.3027 -0.0244 12 8 0.7912 -5.5022 -0.0252 13 7 2.8442 -6.3431 -0.0296 14 6 2.3305 -7.7150 -0.0356 15 6 3.4973 -8.6959 -0.1667 16 1 4.2122 -8.5453 0.6423 17 6 4.1905 -8.5282 -1.5359 18 6 4.5785 -9.9578 -1.9665 19 6 4.0878 -10.8688 -0.8209 20 7 3.0006 -10.0957 -0.1673 21 6 2.7660 -10.5719 1.2025 22 6 1.9138 -11.8142 1.1633 23 8 1.5384 -12.2588 0.0993 24 7 1.5688 -12.4311 2.3110 25 6 0.7399 -13.6385 2.2730 26 6 -0.4007 -13.7445 3.2872 27 6 0.8511 -14.6090 3.4505 28 1 -0.4851 0.8399 0.0041 29 1 3.1244 -3.7274 -0.9069 30 1 3.1245 -3.7352 0.8730 31 1 3.8010 -6.1834 -0.0293 32 1 1.7970 -7.9073 0.8952 33 1 1.6505 -7.8446 -0.8776 34 1 3.5018 -8.0893 -2.2577 35 1 5.0812 -7.9081 -1.4358 36 1 4.0802 -10.2205 -2.8996 37 1 5.6597 -10.0388 -2.0794 38 1 3.7005 -11.8064 -1.2200 39 1 4.8963 -11.0620 -0.1158 40 1 3.7207 -10.8010 1.6760 41 1 2.2537 -9.7977 1.7736 42 1 1.8694 -12.0757 3.1620 43 1 0.5751 -14.0646 1.2834 44 1 -0.5341 -12.9161 3.9830 45 1 -1.3163 -14.2404 2.9650 46 1 0.7589 -15.6736 3.2357 47 1 1.5406 -14.3490 4.2536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731820897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = -38.761922 kcal Electronic energy + Delta-G solvation = -26479.757680 eV Core-core repulsion = 22596.608444 eV Total energy + Delta-G solvation = -3883.149236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46973 -39.48104 -38.62970 -37.31375 -34.52054 -33.36797 -32.44351 -32.41997 -30.70470 -28.64233 -27.20505 -25.53597 -24.77288 -22.86600 -22.58603 -21.51455 -20.88295 -20.57559 -20.20257 -17.89322 -17.51939 -17.11030 -16.40198 -16.36901 -15.92092 -15.56817 -15.23461 -15.10339 -14.81351 -14.79793 -14.40503 -14.13308 -13.84569 -13.62594 -13.25713 -13.09962 -13.01824 -12.60750 -12.44874 -12.24966 -12.08683 -11.93793 -11.77657 -11.58001 -11.52332 -11.14377 -11.03816 -11.03265 -10.99389 -10.78524 -10.75386 -10.14489 -9.81728 -9.39748 -9.17191 -9.05622 -8.87817 -8.85195 -8.22592 -6.48941 -6.20566 -3.91267 2.27543 2.50498 3.00147 3.12606 3.23789 3.26781 3.29754 3.45270 3.54107 3.92236 4.21209 4.21753 4.25100 4.30413 4.45666 4.49070 4.53052 4.60481 4.80500 4.82175 4.84005 4.99128 5.13909 5.14301 5.16569 5.19989 5.32171 5.33827 5.47169 5.52025 5.59070 5.63786 5.65293 5.71569 5.84524 5.89405 5.93161 5.95080 6.08219 6.14424 6.44072 6.46478 6.66825 7.09888 7.59871 7.71571 7.91618 8.35746 8.63750 9.24408 10.86772 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.001857 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.277337 B =15075.755121 C =16338.659137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.738 5.738 14 C 0.136 3.864 15 C 0.053 3.947 16 H 0.060 0.940 17 C -0.121 4.121 18 C -0.123 4.123 19 C 0.036 3.964 20 N -0.482 5.482 21 C 0.023 3.977 22 C 0.520 3.480 23 O -0.513 6.513 24 N -0.709 5.709 25 C 0.082 3.918 26 C -0.194 4.194 27 C -0.191 4.191 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.401 0.599 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 -28.361 5.427 30.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.393 5.393 14 C 0.011 3.989 15 C -0.056 4.056 16 H 0.078 0.922 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.091 4.091 20 N -0.206 5.206 21 C -0.109 4.109 22 C 0.306 3.694 23 O -0.386 6.386 24 N -0.361 5.361 25 C -0.024 4.024 26 C -0.232 4.232 27 C -0.229 4.229 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.235 0.765 43 H 0.155 0.845 44 H 0.116 0.884 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.167 -28.957 4.325 30.396 hybrid contribution 3.295 1.525 1.154 3.809 sum 11.461 -27.432 5.478 30.230 Atomic orbital electron populations 1.70005 1.05945 1.27566 1.46747 1.24989 0.95023 0.99006 0.94551 0.86227 0.79234 0.81277 0.78770 1.20813 1.19977 1.19941 1.22829 0.94867 0.91699 1.59071 0.90989 1.85425 1.04904 0.96269 1.96714 1.23526 1.06561 0.95391 1.04881 1.20284 0.86505 0.86187 0.75224 1.90716 1.15358 1.85554 1.47285 1.45911 1.09869 1.05396 1.78140 1.21087 0.95081 0.79868 1.02843 1.22860 0.95514 0.88907 0.98296 0.92183 1.22373 1.00437 0.97146 0.95908 1.22282 1.00647 0.94359 0.98843 1.23189 0.91582 0.98265 0.96076 1.64896 1.40029 1.01309 1.14411 1.22189 0.99622 0.96445 0.92667 1.20508 0.80487 0.84769 0.83649 1.90712 1.53391 1.65026 1.29505 1.45392 1.53571 1.27909 1.09196 1.21572 0.95945 0.88122 0.96774 1.23438 0.93733 1.02861 1.03185 1.23381 1.01014 0.97877 1.00651 0.92125 0.89215 0.89286 0.77005 0.92119 0.90230 0.90099 0.90899 0.90651 0.91233 0.89192 0.93972 0.91216 0.87459 0.76519 0.84476 0.88365 0.87912 0.87899 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 12 O -0.52 -11.88 15.86 5.56 0.09 -11.79 16 13 N -0.74 -9.59 5.35 -60.29 -0.32 -9.92 16 14 C 0.14 1.64 5.22 -4.04 -0.02 1.62 16 15 C 0.05 0.47 2.32 -66.09 -0.15 0.31 16 16 H 0.06 0.44 8.00 -51.93 -0.42 0.02 16 17 C -0.12 -0.99 6.23 -25.35 -0.16 -1.15 16 18 C -0.12 -0.94 7.00 -25.35 -0.18 -1.11 16 19 C 0.04 0.30 6.08 -2.19 -0.01 0.29 16 20 N -0.48 -4.63 4.56 -223.59 -1.02 -5.65 16 21 C 0.02 0.17 5.31 -4.97 -0.03 0.15 16 22 C 0.52 4.98 7.74 -10.98 -0.09 4.90 16 23 O -0.51 -7.05 15.29 5.56 0.09 -6.97 16 24 N -0.71 -4.84 5.57 -53.80 -0.30 -5.14 16 25 C 0.08 0.57 6.43 -67.93 -0.44 0.14 16 26 C -0.19 -1.09 10.46 -26.73 -0.28 -1.37 16 27 C -0.19 -0.91 10.46 -26.73 -0.28 -1.19 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.40 3.89 8.36 -40.82 -0.34 3.55 16 32 H 0.06 0.77 7.26 -51.93 -0.38 0.39 16 33 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 34 H 0.08 0.79 7.82 -51.93 -0.41 0.39 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 39 H 0.04 0.29 7.68 -51.93 -0.40 -0.11 16 40 H 0.07 0.37 7.64 -51.93 -0.40 -0.03 16 41 H 0.11 0.75 7.07 -51.93 -0.37 0.38 16 42 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 43 H 0.14 1.17 7.40 -51.93 -0.38 0.79 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -37.18 402.69 -10.81 -47.99 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.61 Total: 1.78 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.30 Total: -3.41 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.91 Total: -46.18 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.18 -10.81 -47.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731820897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.232 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds