Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99810 * 2 1 4 4 H 1.48502 * 109.47191 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47176 * 120.00246 * 3 2 1 6 6 H 1.48503 * 109.46998 * 240.00317 * 3 2 1 7 7 C 1.38796 * 120.00176 * 180.27651 * 2 1 3 8 8 H 1.07995 * 120.00391 * 179.97438 * 7 2 1 9 9 S 1.76209 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99943 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46953 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99567 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99891 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99866 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47016 * 174.98960 * 14 13 11 16 16 H 1.09003 * 110.36832 * 57.22914 * 15 14 13 17 17 C 1.54383 * 110.41193 * 294.87800 * 15 14 13 18 18 C 1.54258 * 105.06037 * 217.36885 * 17 15 14 19 19 C 1.54374 * 105.06042 * 359.97438 * 18 17 15 20 20 N 1.48555 * 104.59641 * 23.85334 * 19 18 17 21 21 C 1.46903 * 111.00344 * 200.95743 * 20 19 18 22 22 C 1.50699 * 109.46829 * 279.55215 * 21 20 19 23 23 O 1.21278 * 120.00556 * 359.97438 * 22 21 20 24 24 N 1.34784 * 119.99764 * 179.97438 * 22 21 20 25 25 C 1.46505 * 120.00109 * 179.97438 * 24 22 21 26 26 C 1.52997 * 117.49919 * 223.62291 * 25 24 22 27 27 C 1.52997 * 117.49634 * 154.99647 * 25 24 22 28 28 H 0.96997 * 120.00682 * 359.71848 * 1 2 3 29 29 H 1.08999 * 109.46692 * 299.99574 * 10 9 7 30 30 H 1.08991 * 109.47194 * 59.99688 * 10 9 7 31 31 H 0.97001 * 119.99714 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46819 * 294.98894 * 14 13 11 33 33 H 1.08999 * 109.46787 * 54.98809 * 14 13 11 34 34 H 1.08992 * 110.32452 * 336.26942 * 17 15 14 35 35 H 1.08997 * 110.31801 * 98.47286 * 17 15 14 36 36 H 1.08998 * 110.32233 * 118.89656 * 18 17 15 37 37 H 1.09006 * 110.32146 * 241.00550 * 18 17 15 38 38 H 1.09005 * 110.41396 * 142.63102 * 19 18 17 39 39 H 1.09003 * 110.41478 * 264.95243 * 19 18 17 40 40 H 1.08997 * 109.46971 * 39.55071 * 21 20 19 41 41 H 1.08996 * 109.47134 * 159.55289 * 21 20 19 42 42 H 0.96999 * 119.99743 * 359.97438 * 24 22 21 43 43 H 1.09000 * 115.54455 * 9.33025 * 25 24 22 44 44 H 1.09001 * 117.49711 * 359.97438 * 26 25 24 45 45 H 1.08993 * 117.49876 * 145.02452 * 26 25 24 46 46 H 1.08999 * 117.49838 * 214.97630 * 27 25 24 47 47 H 1.08995 * 117.50234 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1040 1.6964 1.2124 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2020 -0.0058 8 1 3.0903 -1.2020 -0.0062 9 16 1.1293 -2.7280 -0.0125 10 6 2.5159 -3.8914 -0.0176 11 6 1.9874 -5.3027 -0.0244 12 8 0.7912 -5.5022 -0.0252 13 7 2.8442 -6.3431 -0.0296 14 6 2.3305 -7.7150 -0.0356 15 6 3.4973 -8.6959 -0.1667 16 1 4.2122 -8.5453 0.6423 17 6 4.1905 -8.5282 -1.5359 18 6 4.5785 -9.9578 -1.9665 19 6 4.0878 -10.8688 -0.8209 20 7 3.0006 -10.0957 -0.1673 21 6 2.7660 -10.5719 1.2025 22 6 1.9138 -11.8142 1.1633 23 8 1.5384 -12.2588 0.0993 24 7 1.5688 -12.4311 2.3110 25 6 0.7399 -13.6385 2.2730 26 6 -0.4007 -13.7445 3.2872 27 6 0.8511 -14.6090 3.4505 28 1 -0.4851 0.8399 0.0041 29 1 3.1244 -3.7274 -0.9069 30 1 3.1245 -3.7352 0.8730 31 1 3.8010 -6.1834 -0.0293 32 1 1.7970 -7.9073 0.8952 33 1 1.6505 -7.8446 -0.8776 34 1 3.5018 -8.0893 -2.2577 35 1 5.0812 -7.9081 -1.4358 36 1 4.0802 -10.2205 -2.8996 37 1 5.6597 -10.0388 -2.0794 38 1 3.7005 -11.8064 -1.2200 39 1 4.8963 -11.0620 -0.1158 40 1 3.7207 -10.8010 1.6760 41 1 2.2537 -9.7977 1.7736 42 1 1.8694 -12.0757 3.1620 43 1 0.5751 -14.0646 1.2834 44 1 -0.5341 -12.9161 3.9830 45 1 -1.3163 -14.2404 2.9650 46 1 0.7589 -15.6736 3.2357 47 1 1.5406 -14.3490 4.2536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731820897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = -67.760211 kcal Electronic energy + Delta-G solvation = -26481.015140 eV Core-core repulsion = 22596.608444 eV Total energy + Delta-G solvation = -3884.406696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22028 -40.59893 -39.59732 -37.92698 -35.76656 -34.56697 -34.03961 -33.05066 -31.94450 -29.86963 -27.83265 -27.65947 -25.77140 -23.28531 -23.16203 -22.25837 -21.72986 -21.34662 -21.31806 -19.81027 -18.26639 -17.85913 -17.65615 -17.38049 -16.86247 -16.78354 -16.47792 -16.33963 -15.99242 -15.77596 -15.36789 -15.11760 -14.90334 -14.69302 -14.57189 -14.23640 -13.87924 -13.67576 -13.48263 -13.15454 -13.11235 -12.94055 -12.84432 -12.61141 -12.56759 -12.42314 -12.25188 -12.17751 -11.92008 -11.73104 -11.48469 -11.39654 -11.11231 -10.99563 -10.89162 -10.25332 -10.11819 -9.75190 -9.48909 -8.65199 -8.32684 -6.11054 1.27726 1.45342 1.47868 1.57212 1.58397 1.63380 1.91952 2.25321 2.30073 2.97896 3.01340 3.06690 3.35046 3.54291 3.58622 3.78487 3.84570 3.96513 4.03534 4.05425 4.06109 4.17907 4.21179 4.26936 4.33125 4.36757 4.49128 4.53616 4.66516 4.75369 4.75518 4.81551 4.92621 4.99219 5.01659 5.06386 5.19254 5.21818 5.26369 5.39025 5.43370 5.52190 5.84432 5.87858 6.21369 6.52416 6.55299 7.08348 7.26927 7.28035 8.76252 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.001857 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.277337 B =15075.755121 C =16338.659137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.280 1.280 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.127 4.127 11 C 0.534 3.466 12 O -0.568 6.568 13 N -0.706 5.706 14 C 0.139 3.861 15 C 0.065 3.935 16 H 0.091 0.909 17 C -0.121 4.121 18 C -0.120 4.120 19 C 0.041 3.959 20 N -0.512 5.512 21 C 0.025 3.975 22 C 0.514 3.486 23 O -0.566 6.566 24 N -0.695 5.695 25 C 0.054 3.946 26 C -0.193 4.193 27 C -0.168 4.168 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.418 0.582 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.416 0.584 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.791 -28.472 6.984 32.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.206 1.206 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.320 3.680 12 O -0.447 6.447 13 N -0.361 5.361 14 C 0.015 3.985 15 C -0.043 4.043 16 H 0.109 0.891 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.087 4.087 20 N -0.237 5.237 21 C -0.106 4.106 22 C 0.301 3.699 23 O -0.443 6.443 24 N -0.347 5.347 25 C -0.052 4.052 26 C -0.231 4.231 27 C -0.206 4.206 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.255 0.745 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.253 0.747 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.895 -29.108 5.926 31.998 hybrid contribution 2.149 1.377 0.683 2.642 sum 14.043 -27.731 6.609 31.779 Atomic orbital electron populations 1.70183 1.08024 1.28641 1.48012 1.26143 0.95953 1.03374 0.93771 0.84997 0.77775 0.75646 0.79528 1.20560 1.18526 1.18664 1.23180 0.95396 0.91913 1.58858 0.89715 1.85650 1.10780 0.99384 1.97065 1.23357 1.03451 0.94030 1.07021 1.20089 0.86154 0.86719 0.75070 1.90708 1.17677 1.86124 1.50147 1.45548 1.10337 1.04651 1.75576 1.21097 0.96311 0.79771 1.01367 1.22745 0.94234 0.87638 0.99709 0.89112 1.22397 1.00787 0.97782 0.94943 1.22270 1.01851 0.93722 0.97936 1.23131 0.91652 0.97244 0.96649 1.64758 1.41266 1.01774 1.15937 1.22246 1.00800 0.95501 0.92074 1.20976 0.80233 0.85201 0.83456 1.90691 1.55607 1.66621 1.31422 1.45281 1.52666 1.27461 1.09283 1.21568 0.97751 0.89227 0.96653 1.23489 0.93911 1.03348 1.02395 1.23448 1.00152 0.97830 0.99151 0.92047 0.87054 0.86833 0.74484 0.92501 0.93295 0.92354 0.88432 0.92121 0.88951 0.91462 0.91668 0.87906 0.86707 0.74693 0.86880 0.87871 0.87843 0.87054 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 2 C 0.01 0.70 5.49 84.86 0.47 1.16 16 3 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -30.94 9.50 67.95 0.65 -30.30 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 10 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 11 C 0.53 19.48 7.85 87.66 0.69 20.17 16 12 O -0.57 -26.89 15.86 -3.03 -0.05 -26.94 16 13 N -0.71 -16.93 5.35 -463.06 -2.48 -19.41 16 14 C 0.14 3.23 5.22 86.38 0.45 3.68 16 15 C 0.07 0.99 2.32 45.07 0.10 1.09 16 16 H 0.09 0.89 8.00 -2.39 -0.02 0.87 16 17 C -0.12 -1.72 6.23 31.49 0.20 -1.52 16 18 C -0.12 -1.61 7.00 31.49 0.22 -1.39 16 19 C 0.04 0.61 6.08 86.45 0.53 1.14 16 20 N -0.51 -9.20 4.56 -861.32 -3.92 -13.13 16 21 C 0.03 0.34 5.31 85.56 0.45 0.79 16 22 C 0.51 9.77 7.74 87.66 0.68 10.45 16 23 O -0.57 -16.38 15.29 -3.02 -0.05 -16.43 16 24 N -0.69 -8.96 5.57 -442.53 -2.46 -11.42 16 25 C 0.05 0.76 6.43 44.99 0.29 1.04 16 26 C -0.19 -2.02 10.46 30.60 0.32 -1.70 16 27 C -0.17 -1.32 10.46 30.60 0.32 -1.00 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 30 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 31 H 0.42 6.63 8.36 -92.71 -0.78 5.85 16 32 H 0.06 1.39 7.26 -2.39 -0.02 1.38 16 33 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 34 H 0.06 1.10 7.82 -2.39 -0.02 1.08 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.07 1.34 7.66 -2.38 -0.02 1.32 16 39 H 0.07 0.68 7.68 -2.39 -0.02 0.66 16 40 H 0.10 0.70 7.64 -2.39 -0.02 0.68 16 41 H 0.11 1.36 7.07 -2.39 -0.02 1.34 16 42 H 0.42 2.59 8.83 -92.71 -0.82 1.77 16 43 H 0.11 2.13 7.40 -2.39 -0.02 2.12 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -86.01 402.69 -2.61 -88.63 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.61 Total: 19.99 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.80 Total: -0.86 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -8.58 Total: -99.88 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -0.09 Total: -43.37 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -86.01 -2.61 -88.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731820897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.869 kcal (2) G-P(sol) polarization free energy of solvation -86.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds