Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48503 * 109.47424 * 269.99597 * 3 2 1 5 5 H 1.48499 * 109.47417 * 30.00124 * 3 2 1 6 6 H 1.48506 * 109.46736 * 150.00057 * 3 2 1 7 7 C 1.38796 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00007 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00118 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99759 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00263 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00377 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47449 * 179.97438 * 14 13 11 16 16 C 1.53490 * 114.20684 * 174.99557 * 15 14 13 17 17 N 1.47065 * 87.98513 * 139.65907 * 16 15 14 18 18 C 1.34777 * 136.06111 * 152.84024 * 17 16 15 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.46899 * 109.47107 * 180.02562 * 20 18 17 22 22 C 1.48534 * 110.99830 * 52.60468 * 21 20 18 23 23 C 1.54939 * 103.22817 * 159.71871 * 22 21 20 24 24 C 1.54596 * 102.92012 * 322.58829 * 23 22 21 25 25 C 1.47901 * 111.00170 * 169.99808 * 21 20 18 26 26 C 1.47071 * 87.88672 * 333.10246 * 17 16 15 27 27 H 0.96995 * 120.00005 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47109 * 59.99955 * 10 9 7 29 29 H 1.09007 * 109.47058 * 299.99404 * 10 9 7 30 30 H 0.97004 * 119.99816 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46907 * 59.99684 * 14 13 11 32 32 H 1.08997 * 109.47110 * 299.99791 * 14 13 11 33 33 H 1.08999 * 113.27444 * 41.93458 * 15 14 13 34 34 H 1.09000 * 113.47169 * 24.88379 * 16 15 14 35 35 H 1.09001 * 113.46976 * 254.43904 * 16 15 14 36 36 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 37 37 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 38 38 H 1.08996 * 110.66891 * 278.15580 * 22 21 20 39 39 H 1.09001 * 110.67193 * 41.28416 * 22 21 20 40 40 H 1.08998 * 110.72475 * 204.22657 * 23 22 21 41 41 H 1.09000 * 110.72444 * 80.94246 * 23 22 21 42 42 H 1.09001 * 110.31032 * 263.03776 * 24 23 22 43 43 H 1.09004 * 110.30836 * 140.87248 * 24 23 22 44 44 H 1.08999 * 109.91618 * 333.51273 * 25 21 20 45 45 H 1.09004 * 109.91578 * 94.60372 * 25 21 20 46 46 H 1.08998 * 113.47201 * 141.67247 * 26 17 16 47 47 H 1.08996 * 113.46733 * 272.12249 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8914 -0.0013 11 6 1.9873 -5.3027 -0.0030 12 8 0.7910 -5.5022 -0.0040 13 7 2.8440 -6.3431 -0.0024 14 6 2.3303 -7.7151 -0.0035 15 6 3.5023 -8.6986 -0.0031 16 6 3.0879 -10.1715 0.1179 17 7 4.1260 -10.4913 -0.8734 18 6 4.8906 -11.5616 -1.1673 19 8 4.7841 -12.5798 -0.5171 20 6 5.8779 -11.4932 -2.3038 21 7 6.5816 -12.7775 -2.4191 22 6 5.6194 -13.9058 -2.5053 23 6 6.4624 -15.0434 -3.1342 24 6 7.3501 -14.2930 -4.1534 25 6 7.3814 -12.8340 -3.6619 26 6 3.9675 -9.1268 -1.3990 27 1 -0.4850 0.8400 -0.0004 28 1 3.1237 -3.7317 0.8891 29 1 3.1251 -3.7310 -0.8909 30 1 3.8009 -6.1835 -0.0013 31 1 1.7227 -7.8748 -0.8942 32 1 1.7208 -7.8755 0.8857 33 1 4.3106 -8.4052 0.6667 34 1 2.0755 -10.3681 -0.2350 35 1 3.2818 -10.5976 1.1023 36 1 6.5993 -10.6992 -2.1111 37 1 5.3480 -11.2849 -3.2333 38 1 5.2696 -14.1897 -1.5128 39 1 4.7799 -13.6472 -3.1507 40 1 5.8206 -15.7651 -3.6395 41 1 7.0745 -15.5337 -2.3771 42 1 6.9111 -14.3472 -5.1496 43 1 8.3565 -14.7119 -4.1592 44 1 6.9438 -12.1789 -4.4152 45 1 8.4079 -12.5299 -3.4569 46 1 4.9079 -8.6663 -1.7018 47 1 3.1918 -9.0422 -2.1600 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738036080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = -21.002182 kcal Electronic energy + Delta-G solvation = -26025.034620 eV Core-core repulsion = 22142.655503 eV Total energy + Delta-G solvation = -3882.379116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06506 -39.68893 -38.96719 -37.77825 -34.57743 -32.85834 -32.45626 -31.17520 -29.37014 -29.23675 -27.32470 -26.45660 -25.57192 -25.05353 -21.82703 -21.31616 -21.21663 -20.40651 -19.36046 -17.93219 -17.45217 -16.93842 -16.73747 -16.34179 -16.12879 -15.75473 -15.61717 -15.17033 -14.83351 -14.76687 -14.33359 -14.02276 -13.81996 -13.58837 -13.31151 -13.13329 -13.07962 -12.76919 -12.73090 -12.59196 -12.44984 -12.02110 -11.84502 -11.79810 -11.71741 -11.37426 -11.09116 -11.06252 -11.04901 -11.00402 -10.78595 -9.97572 -9.84392 -9.48124 -9.17151 -9.10040 -8.97901 -8.87699 -8.27148 -6.53322 -6.24447 -3.95338 2.18428 2.27978 2.95823 3.03200 3.20275 3.25249 3.28901 3.51690 3.57956 3.87998 3.92466 4.17747 4.22104 4.35535 4.39417 4.51023 4.57977 4.72696 4.77364 4.85057 4.86017 4.92751 4.98940 5.10077 5.10840 5.11619 5.17714 5.20532 5.28908 5.37921 5.42464 5.42936 5.52848 5.60046 5.64640 5.75297 5.82740 5.85151 5.86845 6.09657 6.40907 6.43994 6.51001 7.26732 7.56740 7.61609 7.76784 8.32369 8.53979 9.21017 10.82974 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026524 B = 0.001496 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.385859 B =18712.263023 C =19442.904523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.134 3.866 15 C -0.136 4.136 16 C 0.116 3.884 17 N -0.650 5.650 18 C 0.544 3.456 19 O -0.524 6.524 20 C 0.034 3.966 21 N -0.503 5.503 22 C 0.030 3.970 23 C -0.126 4.126 24 C -0.132 4.132 25 C 0.034 3.966 26 C 0.102 3.898 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.728 -26.223 -6.803 30.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.394 5.394 14 C 0.009 3.991 15 C -0.155 4.155 16 C -0.007 4.007 17 N -0.387 5.387 18 C 0.334 3.666 19 O -0.399 6.399 20 C -0.097 4.097 21 N -0.228 5.228 22 C -0.097 4.097 23 C -0.164 4.164 24 C -0.170 4.170 25 C -0.094 4.094 26 C -0.021 4.021 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.971 -27.257 -6.055 30.787 hybrid contribution 1.915 1.638 -0.858 2.662 sum 14.886 -25.619 -6.913 30.426 Atomic orbital electron populations 1.70014 1.05959 1.27490 1.46796 1.24988 0.95020 0.99030 0.94497 0.86170 0.79417 0.81571 0.78350 1.20273 1.20737 1.19698 1.22865 0.94908 0.91649 1.59046 0.90911 1.85409 1.04899 0.96367 1.96728 1.23531 1.06609 0.95343 1.04956 1.20320 0.86502 0.86291 0.75081 1.90713 1.15380 1.85598 1.47356 1.45974 1.09999 1.05249 1.78195 1.21135 0.94528 0.80337 1.03122 1.23192 0.99636 0.94734 0.97977 1.22923 0.92256 0.91634 0.93937 1.49570 1.39104 1.13605 1.36454 1.20029 0.80543 0.81080 0.84985 1.90664 1.68544 1.29014 1.51692 1.22141 0.96254 0.94986 0.96325 1.64695 1.21271 1.01317 1.35502 1.23542 0.93247 0.90268 1.02677 1.22527 0.98199 0.97454 0.98228 1.22399 1.00959 0.94707 0.98904 1.22941 0.99246 0.97072 0.90116 1.23188 1.02069 0.79985 0.96891 0.92160 0.89176 0.89201 0.76724 0.90976 0.90696 0.86865 0.89140 0.89819 0.87637 0.91739 0.87054 0.94507 0.91083 0.90621 0.91485 0.90845 0.93649 0.89986 0.89957 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 11 C 0.53 9.06 7.85 -10.99 -0.09 8.98 16 12 O -0.52 -11.03 15.86 5.56 0.09 -10.94 16 13 N -0.74 -8.14 5.56 -60.30 -0.33 -8.47 16 14 C 0.13 1.18 5.59 -4.04 -0.02 1.16 16 15 C -0.14 -0.81 4.09 -90.24 -0.37 -1.18 16 16 C 0.12 0.81 8.20 -8.50 -0.07 0.74 16 17 N -0.65 -5.14 3.69 -185.37 -0.68 -5.83 16 18 C 0.54 5.39 7.79 -10.98 -0.09 5.31 16 19 O -0.52 -7.01 14.30 5.56 0.08 -6.93 16 20 C 0.03 0.26 5.35 -4.98 -0.03 0.23 16 21 N -0.50 -4.37 5.26 -231.89 -1.22 -5.59 16 22 C 0.03 0.26 5.30 -1.90 -0.01 0.25 16 23 C -0.13 -0.85 7.06 -24.87 -0.18 -1.03 16 24 C -0.13 -0.74 6.93 -25.38 -0.18 -0.92 16 25 C 0.03 0.22 6.69 -2.76 -0.02 0.20 16 26 C 0.10 0.56 7.98 -8.63 -0.07 0.49 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 30 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 31 H 0.07 0.68 7.81 -51.93 -0.41 0.27 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.40 7.81 -51.93 -0.41 0.00 16 38 H 0.11 1.25 5.97 -51.93 -0.31 0.94 16 39 H 0.04 0.32 8.02 -51.93 -0.42 -0.09 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.25 7.57 -51.93 -0.39 -0.14 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.47 7.88 -51.93 -0.41 0.06 16 LS Contribution 398.75 15.07 6.01 6.01 Total: -1.00 -36.46 398.75 -10.98 -47.43 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.72 Total: -1.69 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.69 Total: -1.14 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -1.51 Total: -44.92 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.17 Total: -17.87 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.46 -10.98 -47.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738036080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.431 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds