Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48505 * 109.47209 * 269.99440 * 3 2 1 5 5 H 1.48503 * 109.47302 * 29.99881 * 3 2 1 6 6 H 1.48502 * 109.47339 * 149.99762 * 3 2 1 7 7 C 1.38795 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99923 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00231 * 180.02562 * 7 2 1 10 10 C 1.81006 * 99.99857 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46951 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00112 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00262 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00375 * 174.97499 * 13 11 10 15 15 C 1.53009 * 115.54715 * 65.40694 * 14 13 11 16 16 N 1.46505 * 109.46831 * 85.77478 * 15 14 13 17 17 C 1.34771 * 119.99611 * 174.96827 * 16 15 14 18 18 O 1.21281 * 120.00176 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99907 * 180.02562 * 17 16 15 20 20 N 1.46901 * 109.47497 * 180.02562 * 19 17 16 21 21 C 1.48539 * 110.99857 * 52.59977 * 20 19 17 22 22 C 1.54934 * 103.22571 * 159.72347 * 21 20 19 23 23 C 1.54599 * 102.92408 * 322.58868 * 22 21 20 24 24 C 1.47899 * 111.00250 * 169.99790 * 20 19 17 25 25 C 1.52993 * 117.50158 * 279.74001 * 14 13 11 26 26 C 1.52999 * 117.49870 * 211.07567 * 14 13 11 27 27 H 0.96999 * 119.99721 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47107 * 60.00134 * 10 9 7 29 29 H 1.08998 * 109.46978 * 299.99829 * 10 9 7 30 30 H 0.97002 * 119.99687 * 354.97747 * 13 11 10 31 31 H 1.08998 * 109.46869 * 205.77663 * 15 14 13 32 32 H 1.08996 * 109.47327 * 325.77878 * 15 14 13 33 33 H 0.96999 * 119.99903 * 354.97382 * 16 15 14 34 34 H 1.08997 * 109.47126 * 299.99962 * 19 17 16 35 35 H 1.09000 * 109.47231 * 60.00227 * 19 17 16 36 36 H 1.08996 * 110.66595 * 278.16137 * 21 20 19 37 37 H 1.08997 * 110.66619 * 41.28776 * 21 20 19 38 38 H 1.08999 * 110.72827 * 204.22838 * 22 21 20 39 39 H 1.09001 * 110.72416 * 80.94302 * 22 21 20 40 40 H 1.09002 * 110.30754 * 263.04108 * 23 22 21 41 41 H 1.09003 * 110.39361 * 140.91727 * 23 22 21 42 42 H 1.08993 * 109.92103 * 333.50841 * 24 20 19 43 43 H 1.09007 * 109.91563 * 94.60656 * 24 20 19 44 44 H 1.09005 * 117.49813 * 359.97438 * 25 14 13 45 45 H 1.08997 * 117.50305 * 145.02362 * 25 14 13 46 46 H 1.09001 * 117.49664 * 214.97591 * 26 14 13 47 47 H 1.08992 * 117.50319 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3441 -2.2962 0.0025 13 7 6.0458 -4.4946 0.0016 14 6 7.4863 -4.7373 -0.1084 15 6 8.3306 -4.2426 1.0679 16 7 8.3585 -5.2679 2.1141 17 6 9.1274 -5.0943 3.2072 18 8 9.7958 -4.0892 3.3251 19 6 9.1566 -6.1491 4.2831 20 7 10.0625 -5.7260 5.3594 21 6 9.7176 -4.3637 5.8406 22 6 10.3720 -4.3072 7.2439 23 6 10.1523 -5.7384 7.7857 24 6 9.9381 -6.6129 6.5363 25 6 8.1099 -4.6681 -1.5038 26 6 7.9350 -6.0211 -0.8095 27 1 -0.4850 0.8401 -0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6434 -3.4317 0.8907 30 1 5.4322 -5.2423 0.0740 31 1 9.3466 -4.0431 0.7274 32 1 7.8951 -3.3271 1.4681 33 1 7.8237 -6.0716 2.0199 34 1 8.1530 -6.2850 4.6860 35 1 9.5089 -7.0899 3.8601 36 1 10.1454 -3.6046 5.1858 37 1 8.6368 -4.2442 5.9151 38 1 9.8690 -3.5745 7.8749 39 1 11.4360 -4.0840 7.1646 40 1 9.2701 -5.7696 8.4250 41 1 11.0304 -6.0748 8.3370 42 1 8.9441 -7.0593 6.5615 43 1 10.6955 -7.3957 6.4931 44 1 7.4482 -4.4424 -2.3401 45 1 9.1217 -4.2707 -1.5838 46 1 8.8318 -6.5131 -0.4330 47 1 7.1584 -6.6853 -1.1884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738754053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = -34.019096 kcal Electronic energy + Delta-G solvation = -26982.476958 eV Core-core repulsion = 23099.533386 eV Total energy + Delta-G solvation = -3882.943572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50906 -39.77871 -38.38717 -37.39338 -34.35993 -32.92040 -32.62698 -32.46604 -29.27629 -29.08981 -28.27268 -25.78856 -25.61868 -22.99056 -21.80453 -21.44931 -21.12853 -20.60682 -19.74449 -17.94582 -17.55307 -16.77510 -16.55732 -16.33533 -16.15969 -15.55511 -15.45467 -15.06004 -15.00853 -14.66456 -14.36000 -13.96635 -13.83108 -13.56199 -13.40520 -12.97710 -12.82870 -12.76154 -12.54268 -12.48407 -12.16123 -11.85221 -11.84427 -11.60716 -11.29949 -11.25311 -11.13279 -11.02988 -10.87668 -10.72487 -10.58630 -9.88358 -9.81447 -9.60092 -9.20499 -9.09666 -9.02010 -8.73261 -8.53812 -6.95440 -6.31913 -4.04040 2.44008 2.63311 2.70635 2.86306 3.15765 3.31347 3.46891 3.49035 3.57903 3.74972 4.24192 4.30658 4.34020 4.36026 4.53803 4.57686 4.63602 4.65897 4.72970 4.87869 4.95971 5.01779 5.07247 5.10784 5.23827 5.25726 5.36137 5.37293 5.48429 5.51013 5.57532 5.62842 5.69225 5.73472 5.79998 5.85259 5.89626 5.94591 5.97195 6.26814 6.49061 6.55227 6.58187 7.26730 7.49118 7.91040 8.04722 8.38039 8.41021 9.14261 10.77239 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.002402 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.941954 B =11656.573698 C =13269.578386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.507 6.507 13 N -0.708 5.708 14 C 0.088 3.912 15 C 0.152 3.848 16 N -0.727 5.727 17 C 0.511 3.489 18 O -0.522 6.522 19 C 0.027 3.973 20 N -0.502 5.502 21 C 0.029 3.971 22 C -0.126 4.126 23 C -0.132 4.132 24 C 0.034 3.966 25 C -0.158 4.158 26 C -0.169 4.169 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.401 0.599 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.206 -19.519 7.868 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.380 6.380 13 N -0.363 5.363 14 C 0.000 4.000 15 C 0.028 3.972 16 N -0.379 5.379 17 C 0.297 3.703 18 O -0.397 6.397 19 C -0.104 4.104 20 N -0.227 5.227 21 C -0.098 4.098 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.094 4.094 25 C -0.197 4.197 26 C -0.206 4.206 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.237 0.763 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 21.313 -17.103 7.725 28.398 hybrid contribution -2.469 -1.219 0.166 2.758 sum 18.845 -18.322 7.891 27.442 Atomic orbital electron populations 1.69936 1.05915 1.27806 1.47976 1.24713 0.94461 0.98988 0.93144 0.86740 0.81916 0.83264 0.79970 1.19173 1.19906 1.15895 1.22307 0.88261 0.97523 1.58909 0.89405 1.84837 1.09281 0.99720 1.97420 1.23279 0.93767 1.04645 1.05766 1.20338 0.90553 0.82130 0.75029 1.90715 1.58580 1.42017 1.46647 1.45387 1.05217 1.08266 1.77409 1.20665 0.82486 1.02816 0.94049 1.21059 0.99235 0.91367 0.85588 1.45972 1.47514 1.23645 1.20817 1.20453 0.79320 0.87854 0.82698 1.90675 1.41947 1.29632 1.77429 1.22219 0.96872 0.98204 0.93117 1.64700 1.48279 1.03029 1.06682 1.23550 0.98302 0.91983 0.95917 1.22527 1.01751 0.96210 0.95946 1.22398 1.02017 0.95617 0.96949 1.22935 1.00556 0.96226 0.89665 1.23373 1.02692 0.98750 0.94863 1.23334 1.03512 0.90772 1.03031 0.91910 0.88458 0.88562 0.76348 0.90217 0.89427 0.76780 0.91746 0.87751 0.86886 0.94329 0.91049 0.90696 0.91528 0.90975 0.93736 0.90173 0.87824 0.87725 0.87589 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.23 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 9 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 10 C -0.12 -2.30 6.16 36.01 0.22 -2.07 16 11 C 0.53 8.89 7.66 -10.98 -0.08 8.81 16 12 O -0.51 -10.43 14.64 5.56 0.08 -10.35 16 13 N -0.71 -8.01 5.45 -47.61 -0.26 -8.27 16 14 C 0.09 0.88 1.79 -131.82 -0.24 0.65 16 15 C 0.15 1.77 5.63 -4.03 -0.02 1.75 16 16 N -0.73 -6.62 5.45 -60.29 -0.33 -6.95 16 17 C 0.51 5.64 7.54 -10.99 -0.08 5.56 16 18 O -0.52 -7.92 13.52 5.56 0.08 -7.84 16 19 C 0.03 0.22 5.52 -4.98 -0.03 0.20 16 20 N -0.50 -4.91 5.26 -231.89 -1.22 -6.13 16 21 C 0.03 0.32 5.30 -1.90 -0.01 0.31 16 22 C -0.13 -1.08 7.06 -24.87 -0.18 -1.25 16 23 C -0.13 -0.92 6.93 -25.37 -0.18 -1.10 16 24 C 0.03 0.25 6.69 -2.75 -0.02 0.23 16 25 C -0.16 -1.48 10.11 -26.69 -0.27 -1.75 16 26 C -0.17 -1.11 9.95 -26.69 -0.27 -1.38 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 30 H 0.40 3.32 8.83 -40.82 -0.36 2.96 16 31 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 32 H 0.09 1.39 6.84 -51.93 -0.35 1.03 16 33 H 0.40 2.44 8.37 -40.82 -0.34 2.10 16 34 H 0.06 0.44 7.81 -51.93 -0.41 0.04 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 1.52 5.97 -51.93 -0.31 1.21 16 37 H 0.04 0.43 8.02 -51.93 -0.42 0.01 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.04 0.29 7.57 -51.93 -0.39 -0.11 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.10 0.92 8.05 -51.93 -0.42 0.51 16 46 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 396.64 15.07 5.98 5.98 Total: -1.00 -35.81 396.64 -10.18 -45.99 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.64 Total: 3.57 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.93 Total: -1.94 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -1.03 Total: -46.98 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.16 Total: -18.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.81 -10.18 -45.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738754053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.972 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds