Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48505 * 109.47209 * 269.99440 * 3 2 1 5 5 H 1.48503 * 109.47302 * 29.99881 * 3 2 1 6 6 H 1.48502 * 109.47339 * 149.99762 * 3 2 1 7 7 C 1.38795 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99923 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00231 * 180.02562 * 7 2 1 10 10 C 1.81006 * 99.99857 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46951 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00112 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00262 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00375 * 174.97499 * 13 11 10 15 15 C 1.53009 * 115.54715 * 65.40694 * 14 13 11 16 16 N 1.46505 * 109.46831 * 85.77478 * 15 14 13 17 17 C 1.34771 * 119.99611 * 174.96827 * 16 15 14 18 18 O 1.21281 * 120.00176 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99907 * 180.02562 * 17 16 15 20 20 N 1.46901 * 109.47497 * 180.02562 * 19 17 16 21 21 C 1.48539 * 110.99857 * 52.59977 * 20 19 17 22 22 C 1.54934 * 103.22571 * 159.72347 * 21 20 19 23 23 C 1.54599 * 102.92408 * 322.58868 * 22 21 20 24 24 C 1.47899 * 111.00250 * 169.99790 * 20 19 17 25 25 C 1.52993 * 117.50158 * 279.74001 * 14 13 11 26 26 C 1.52999 * 117.49870 * 211.07567 * 14 13 11 27 27 H 0.96999 * 119.99721 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47107 * 60.00134 * 10 9 7 29 29 H 1.08998 * 109.46978 * 299.99829 * 10 9 7 30 30 H 0.97002 * 119.99687 * 354.97747 * 13 11 10 31 31 H 1.08998 * 109.46869 * 205.77663 * 15 14 13 32 32 H 1.08996 * 109.47327 * 325.77878 * 15 14 13 33 33 H 0.96999 * 119.99903 * 354.97382 * 16 15 14 34 34 H 1.08997 * 109.47126 * 299.99962 * 19 17 16 35 35 H 1.09000 * 109.47231 * 60.00227 * 19 17 16 36 36 H 1.08996 * 110.66595 * 278.16137 * 21 20 19 37 37 H 1.08997 * 110.66619 * 41.28776 * 21 20 19 38 38 H 1.08999 * 110.72827 * 204.22838 * 22 21 20 39 39 H 1.09001 * 110.72416 * 80.94302 * 22 21 20 40 40 H 1.09002 * 110.30754 * 263.04108 * 23 22 21 41 41 H 1.09003 * 110.39361 * 140.91727 * 23 22 21 42 42 H 1.08993 * 109.92103 * 333.50841 * 24 20 19 43 43 H 1.09007 * 109.91563 * 94.60656 * 24 20 19 44 44 H 1.09005 * 117.49813 * 359.97438 * 25 14 13 45 45 H 1.08997 * 117.50305 * 145.02362 * 25 14 13 46 46 H 1.09001 * 117.49664 * 214.97591 * 26 14 13 47 47 H 1.08992 * 117.50319 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3441 -2.2962 0.0025 13 7 6.0458 -4.4946 0.0016 14 6 7.4863 -4.7373 -0.1084 15 6 8.3306 -4.2426 1.0679 16 7 8.3585 -5.2679 2.1141 17 6 9.1274 -5.0943 3.2072 18 8 9.7958 -4.0892 3.3251 19 6 9.1566 -6.1491 4.2831 20 7 10.0625 -5.7260 5.3594 21 6 9.7176 -4.3637 5.8406 22 6 10.3720 -4.3072 7.2439 23 6 10.1523 -5.7384 7.7857 24 6 9.9381 -6.6129 6.5363 25 6 8.1099 -4.6681 -1.5038 26 6 7.9350 -6.0211 -0.8095 27 1 -0.4850 0.8401 -0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6434 -3.4317 0.8907 30 1 5.4322 -5.2423 0.0740 31 1 9.3466 -4.0431 0.7274 32 1 7.8951 -3.3271 1.4681 33 1 7.8237 -6.0716 2.0199 34 1 8.1530 -6.2850 4.6860 35 1 9.5089 -7.0899 3.8601 36 1 10.1454 -3.6046 5.1858 37 1 8.6368 -4.2442 5.9151 38 1 9.8690 -3.5745 7.8749 39 1 11.4360 -4.0840 7.1646 40 1 9.2701 -5.7696 8.4250 41 1 11.0304 -6.0748 8.3370 42 1 8.9441 -7.0593 6.5615 43 1 10.6955 -7.3957 6.4931 44 1 7.4482 -4.4424 -2.3401 45 1 9.1217 -4.2707 -1.5838 46 1 8.8318 -6.5131 -0.4330 47 1 7.1584 -6.6853 -1.1884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738754053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = -62.796565 kcal Electronic energy + Delta-G solvation = -26983.724843 eV Core-core repulsion = 23099.533386 eV Total energy + Delta-G solvation = -3884.191457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42238 -40.79029 -39.21927 -38.38749 -35.27692 -34.69501 -34.04706 -33.29546 -30.66196 -29.75240 -29.12639 -27.87392 -26.50776 -23.72998 -22.75250 -22.32024 -21.71099 -21.46736 -20.78470 -19.91988 -18.39797 -17.90035 -17.61571 -17.19740 -17.11503 -16.96306 -16.47181 -16.41144 -16.12159 -15.86759 -15.38271 -15.14928 -14.94298 -14.78446 -14.57366 -14.25470 -13.93012 -13.74073 -13.50388 -13.36483 -13.27547 -13.13767 -13.03753 -12.66822 -12.49316 -12.45192 -12.22964 -11.99862 -11.92794 -11.87989 -11.51824 -11.46077 -11.19347 -10.92166 -10.70826 -10.54712 -10.14954 -10.10314 -9.42023 -9.01668 -8.53835 -6.24237 0.95968 1.28738 1.44203 1.51738 1.53725 1.59869 1.93870 2.08882 2.22716 2.68786 2.76644 2.84532 3.06359 3.45731 3.64904 3.74388 3.78471 3.79869 3.93751 3.99066 4.08058 4.21739 4.29032 4.32380 4.39341 4.42559 4.48854 4.57387 4.63273 4.72719 4.74048 4.83057 4.92525 4.97562 4.98087 5.09455 5.16827 5.18864 5.28513 5.42363 5.49146 5.68752 5.83371 5.95519 6.09361 6.44210 6.55001 6.91786 7.19703 7.26119 8.58432 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011412 B = 0.002402 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.941954 B =11656.573698 C =13269.578386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.240 1.240 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.110 4.110 11 C 0.537 3.463 12 O -0.552 6.552 13 N -0.681 5.681 14 C 0.066 3.934 15 C 0.161 3.839 16 N -0.709 5.709 17 C 0.504 3.496 18 O -0.571 6.571 19 C 0.032 3.968 20 N -0.521 5.521 21 C 0.031 3.969 22 C -0.126 4.126 23 C -0.128 4.128 24 C 0.034 3.966 25 C -0.175 4.175 26 C -0.120 4.120 27 H 0.277 0.723 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.421 0.579 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.417 0.583 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.127 0.873 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.120 -22.757 8.128 31.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.164 1.164 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.261 4.261 11 C 0.323 3.677 12 O -0.429 6.429 13 N -0.335 5.335 14 C -0.022 4.022 15 C 0.036 3.964 16 N -0.363 5.363 17 C 0.291 3.709 18 O -0.450 6.450 19 C -0.099 4.099 20 N -0.246 5.246 21 C -0.097 4.097 22 C -0.164 4.164 23 C -0.166 4.166 24 C -0.094 4.094 25 C -0.213 4.213 26 C -0.157 4.157 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.259 0.741 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.254 0.746 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.145 0.855 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.196 -20.440 7.979 31.211 hybrid contribution -2.703 -0.366 0.063 2.728 sum 19.493 -20.805 8.042 29.623 Atomic orbital electron populations 1.70008 1.07202 1.28991 1.49163 1.25531 0.95263 1.02144 0.92989 0.85899 0.80620 0.79837 0.80212 1.18652 1.18368 1.16358 1.22449 0.90180 0.96688 1.58135 0.91762 1.84812 1.06508 1.06355 1.97582 1.23260 0.95826 0.99495 1.07469 1.20007 0.89266 0.83430 0.75034 1.90713 1.59167 1.43840 1.49184 1.45036 1.06482 1.06867 1.75100 1.20702 0.81001 1.06625 0.93901 1.20713 0.98695 0.90444 0.86539 1.45802 1.47133 1.23588 1.19778 1.21134 0.78537 0.87830 0.83354 1.90677 1.44079 1.31769 1.78440 1.22306 0.97843 0.97909 0.91800 1.64665 1.49170 1.02749 1.07999 1.23356 0.97500 0.92286 0.96530 1.22516 1.01195 0.97845 0.94869 1.22415 1.03017 0.94085 0.97111 1.23018 1.01789 0.95960 0.88591 1.23444 1.02487 1.01561 0.93847 1.23499 1.04259 0.89140 0.98817 0.91364 0.86638 0.86929 0.74052 0.91004 0.94200 0.74592 0.89919 0.84641 0.90380 0.95267 0.90608 0.91252 0.90598 0.89801 0.92332 0.88995 0.88629 0.87757 0.85499 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.61 13.97 21.65 0.30 -55.30 16 2 C 0.05 2.71 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.35 27.74 68.60 1.90 47.25 16 4 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.24 -12.00 6.74 99.48 0.67 -11.33 16 7 C -0.53 -30.47 10.04 67.95 0.68 -29.78 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 10 C -0.11 -3.96 6.16 71.24 0.44 -3.52 16 11 C 0.54 17.52 7.66 87.66 0.67 18.19 16 12 O -0.55 -23.15 14.64 -3.04 -0.04 -23.19 16 13 N -0.68 -13.93 5.45 -422.93 -2.31 -16.24 16 14 C 0.07 1.18 1.79 3.60 0.01 1.19 16 15 C 0.16 3.74 5.63 86.38 0.49 4.23 16 16 N -0.71 -11.84 5.45 -463.05 -2.52 -14.36 16 17 C 0.50 10.83 7.54 87.66 0.66 11.49 16 18 O -0.57 -18.17 13.52 -3.03 -0.04 -18.21 16 19 C 0.03 0.45 5.52 85.56 0.47 0.93 16 20 N -0.52 -9.54 5.26 -887.58 -4.67 -14.21 16 21 C 0.03 0.69 5.30 86.65 0.46 1.15 16 22 C -0.13 -2.13 7.06 31.80 0.22 -1.90 16 23 C -0.13 -1.55 6.93 31.48 0.22 -1.33 16 24 C 0.03 0.41 6.69 86.45 0.58 0.99 16 25 C -0.17 -2.92 10.11 30.62 0.31 -2.61 16 26 C -0.12 -1.07 9.95 30.62 0.30 -0.76 16 27 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 29 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 30 H 0.42 5.43 8.83 -92.71 -0.82 4.61 16 31 H 0.07 1.77 7.89 -2.39 -0.02 1.75 16 32 H 0.04 1.33 6.84 -2.39 -0.02 1.32 16 33 H 0.42 3.71 8.37 -92.71 -0.78 2.94 16 34 H 0.08 0.89 7.81 -2.39 -0.02 0.87 16 35 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 2.30 5.97 -2.39 -0.01 2.28 16 37 H 0.03 0.67 8.02 -2.39 -0.02 0.65 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.55 7.57 -2.39 -0.02 0.54 16 43 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 44 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.10 1.74 8.05 -2.39 -0.02 1.72 16 46 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -82.83 396.64 -3.09 -85.92 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.64 Total: 16.98 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.98 Total: 1.42 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -9.19 Total: -100.11 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.09 Total: -41.40 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -82.83 -3.09 -85.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738754053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.125 kcal (2) G-P(sol) polarization free energy of solvation -82.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds