Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47088 * 269.99970 * 3 2 1 5 5 H 1.48502 * 109.46832 * 30.00014 * 3 2 1 6 6 H 1.48494 * 109.46994 * 149.99665 * 3 2 1 7 7 C 1.38795 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99929 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00473 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47343 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00398 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00188 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00216 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46903 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.50540 * 304.92176 * 15 14 13 17 17 C 1.53122 * 109.50392 * 65.00062 * 15 14 13 18 18 C 1.53116 * 109.16222 * 177.59238 * 17 15 14 19 19 C 1.53042 * 109.27872 * 302.34721 * 18 17 15 20 20 N 1.46852 * 109.52249 * 59.17510 * 19 18 17 21 21 C 1.46904 * 110.99710 * 174.15932 * 20 19 18 22 22 H 1.09001 * 110.43559 * 304.18044 * 21 20 19 23 23 C 1.54631 * 110.48151 * 66.86171 * 21 20 19 24 24 C 1.54485 * 101.76023 * 143.47387 * 23 21 20 25 25 N 1.46762 * 105.47742 * 334.58413 * 24 23 21 26 26 C 1.34421 * 111.29459 * 17.01652 * 25 24 23 27 27 O 1.21288 * 124.93474 * 179.56163 * 26 25 24 28 28 C 1.46843 * 111.20067 * 298.25875 * 20 19 18 29 29 H 0.97005 * 120.00075 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47017 * 59.99895 * 10 9 7 31 31 H 1.08996 * 109.47327 * 300.00417 * 10 9 7 32 32 H 0.97002 * 119.99728 * 359.97438 * 13 11 10 33 33 H 1.08998 * 109.47132 * 299.99388 * 14 13 11 34 34 H 1.09003 * 109.47177 * 59.99652 * 14 13 11 35 35 H 1.08994 * 109.52400 * 297.49855 * 17 15 14 36 36 H 1.08997 * 109.51964 * 57.68651 * 17 15 14 37 37 H 1.08995 * 109.50276 * 62.28118 * 18 17 15 38 38 H 1.08994 * 109.50736 * 182.40481 * 18 17 15 39 39 H 1.08993 * 109.46490 * 179.19287 * 19 18 17 40 40 H 1.09004 * 109.45870 * 299.17193 * 19 18 17 41 41 H 1.09001 * 110.97117 * 261.59141 * 23 21 20 42 42 H 1.08996 * 110.97264 * 25.35853 * 23 21 20 43 43 H 1.09002 * 110.24300 * 215.58124 * 24 23 21 44 44 H 1.09010 * 110.24299 * 93.58601 * 24 23 21 45 45 H 0.96991 * 124.35247 * 196.99837 * 25 24 23 46 46 H 1.09002 * 109.45945 * 301.72851 * 28 20 19 47 47 H 1.09001 * 109.46045 * 181.75593 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8439 -6.3432 0.0007 14 6 2.3301 -7.7152 0.0008 15 6 3.5022 -8.6986 0.0009 16 1 4.1591 -8.4820 -0.8415 17 6 4.2859 -8.5599 1.3091 18 6 5.4201 -9.5883 1.3270 19 6 4.8319 -10.9921 1.1678 20 7 4.0928 -11.0738 -0.0985 21 6 3.6312 -12.4454 -0.3511 22 1 4.4718 -13.1391 -0.3338 23 6 2.5643 -12.8575 0.6896 24 6 1.6048 -13.7146 -0.1656 25 7 1.7737 -13.2357 -1.5425 26 6 2.9065 -12.5246 -1.6766 27 8 3.2919 -12.0203 -2.7102 28 6 2.9695 -10.1282 -0.1198 29 1 -0.4850 0.8401 0.0004 30 1 3.1243 -3.7314 0.8895 31 1 3.1243 -3.7314 -0.8904 32 1 3.8007 -6.1836 0.0004 33 1 1.7212 -7.8751 0.8905 34 1 1.7219 -7.8754 -0.8894 35 1 4.7036 -7.5556 1.3787 36 1 3.6197 -8.7376 2.1533 37 1 6.1073 -9.3864 0.5054 38 1 5.9554 -9.5233 2.2742 39 1 5.6381 -11.7256 1.1658 40 1 4.1552 -11.1985 1.9971 41 1 3.0082 -13.4498 1.4898 42 1 2.0529 -11.9828 1.0913 43 1 0.5754 -13.5679 0.1612 44 1 1.8769 -14.7679 -0.0965 45 1 1.1485 -13.4101 -2.2632 46 1 2.3018 -10.3388 0.7156 47 1 2.4232 -10.2343 -1.0571 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752777069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = -101.837042 kcal Electronic energy + Delta-G solvation = -27253.923601 eV Core-core repulsion = 23368.039223 eV Total energy + Delta-G solvation = -3885.884379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87019 -40.72448 -39.46996 -37.43497 -36.27087 -34.58781 -34.14732 -32.59790 -30.83643 -30.50198 -28.09747 -27.71814 -26.63969 -24.84253 -23.24432 -22.55277 -21.80996 -21.03372 -20.34411 -19.82850 -18.42592 -17.96414 -17.42544 -17.35832 -16.88112 -16.77796 -16.57965 -15.98698 -15.69609 -15.56433 -15.34750 -15.19014 -14.83814 -14.78767 -14.64207 -14.36607 -14.09346 -13.83248 -13.71807 -13.47546 -13.16777 -13.11652 -13.02516 -12.88674 -12.74476 -12.59573 -12.36294 -11.88878 -11.74243 -11.63721 -11.40410 -11.34920 -11.14465 -10.97082 -10.87105 -10.28196 -10.14015 -10.09105 -9.24303 -8.67175 -8.34739 -6.12975 1.26489 1.42637 1.46533 1.50346 1.57564 1.60076 2.22725 2.27910 2.36751 2.85211 2.99307 3.31562 3.34866 3.63055 3.65584 3.75653 3.90050 3.95300 4.02467 4.06923 4.22759 4.28052 4.32177 4.36681 4.45887 4.50532 4.57328 4.59739 4.61984 4.74990 4.80152 4.87337 4.94288 4.97274 5.04195 5.14294 5.18885 5.28697 5.38912 5.41904 5.50582 5.76330 5.98932 6.02955 6.10472 6.19881 6.48468 7.06422 7.22466 7.25093 8.74529 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.001895 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.722399 B =14771.016830 C =15319.769068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.130 3.870 15 C -0.082 4.082 16 H 0.079 0.921 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.056 3.944 20 N -0.530 5.530 21 C 0.056 3.944 22 H 0.134 0.866 23 C -0.165 4.165 24 C 0.102 3.898 25 N -0.730 5.730 26 C 0.510 3.490 27 O -0.573 6.573 28 C 0.067 3.933 29 H 0.271 0.729 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.415 0.585 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.415 0.585 46 H 0.055 0.945 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 -32.569 6.250 35.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.364 5.364 14 C 0.006 3.994 15 C -0.101 4.101 16 H 0.097 0.903 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.070 4.070 20 N -0.254 5.254 21 C -0.056 4.056 22 H 0.152 0.848 23 C -0.204 4.204 24 C -0.022 4.022 25 N -0.385 5.385 26 C 0.296 3.704 27 O -0.451 6.451 28 C -0.061 4.061 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.252 0.748 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.139 0.861 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.254 0.746 46 H 0.073 0.927 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.450 -32.433 5.445 34.507 hybrid contribution 0.780 1.112 -0.179 1.370 sum 11.230 -31.321 5.266 33.687 Atomic orbital electron populations 1.70188 1.07979 1.28605 1.48020 1.26151 0.96002 1.03380 0.93759 0.84935 0.78218 0.75941 0.78770 1.19392 1.20246 1.18104 1.23203 0.95361 0.91944 1.58836 0.89871 1.85576 1.10614 0.99278 1.97052 1.23364 1.03548 0.94257 1.06840 1.20086 0.86213 0.86716 0.75098 1.90686 1.17446 1.86145 1.50274 1.45713 1.10260 1.04976 1.75409 1.21295 0.96584 0.80190 1.01333 1.21253 0.95703 0.92910 1.00245 0.90301 1.21667 0.97614 1.00312 0.95700 1.21578 0.97362 0.93315 1.02880 1.22216 0.97796 0.98533 0.88497 1.61782 1.24520 1.03258 1.35835 1.22511 0.98602 0.92224 0.92270 0.84841 1.23375 0.96705 1.01642 0.98684 1.22267 1.01607 0.99312 0.79025 1.46335 1.23884 1.54183 1.14109 1.21220 0.81868 0.76797 0.90498 1.90746 1.70684 1.49130 1.34533 1.21937 0.92315 0.91433 1.00462 0.91997 0.86973 0.87364 0.74750 0.91838 0.93413 0.91112 0.91486 0.91710 0.89381 0.89018 0.92993 0.86058 0.89948 0.88663 0.88475 0.74636 0.92733 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.55 13.22 21.65 0.29 -56.27 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 44.00 29.55 68.60 2.03 46.02 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 11 C 0.53 20.29 7.85 87.65 0.69 20.98 16 12 O -0.57 -27.06 15.86 -3.04 -0.05 -27.11 16 13 N -0.71 -18.81 5.31 -463.05 -2.46 -21.26 16 14 C 0.13 3.13 5.07 86.38 0.44 3.57 16 15 C -0.08 -1.45 2.39 -10.74 -0.03 -1.47 16 16 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 17 C -0.12 -1.54 5.13 30.67 0.16 -1.38 16 18 C -0.11 -1.17 6.09 30.65 0.19 -0.99 16 19 C 0.06 0.51 5.18 86.33 0.45 0.96 16 20 N -0.53 -7.65 4.68 -871.13 -4.08 -11.73 16 21 C 0.06 0.64 3.05 44.91 0.14 0.78 16 22 H 0.13 1.14 8.12 -2.39 -0.02 1.12 16 23 C -0.16 -0.76 5.66 31.65 0.18 -0.58 16 24 C 0.10 0.38 7.78 86.83 0.68 1.06 16 25 N -0.73 -8.25 6.24 -459.79 -2.87 -11.12 16 26 C 0.51 9.59 6.45 87.89 0.57 10.16 16 27 O -0.57 -17.20 17.89 -3.05 -0.05 -17.25 16 28 C 0.07 1.14 4.08 86.33 0.35 1.49 16 29 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 30 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 31 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 32 H 0.42 8.25 7.67 -92.71 -0.71 7.54 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 0.93 7.25 -2.39 -0.02 0.92 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.60 8.11 -2.39 -0.02 0.58 16 40 H 0.05 0.35 7.55 -2.38 -0.02 0.33 16 41 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.08 0.54 5.72 -2.39 -0.01 0.53 16 43 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 45 H 0.41 4.13 8.96 -92.72 -0.83 3.29 16 46 H 0.05 0.78 6.14 -2.39 -0.01 0.77 16 47 H 0.05 1.14 6.77 -2.39 -0.02 1.13 16 Total: -1.00 -86.41 386.50 -3.55 -89.97 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.55 Total: 18.43 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.35 Total: 0.08 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -9.12 Total: -100.38 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.10 Total: -44.36 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -86.41 -3.55 -89.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.872 kcal (2) G-P(sol) polarization free energy of solvation -86.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds