Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86797 * 119.99639 * 2 1 4 4 H 1.48497 * 109.47365 * 270.00563 * 3 2 1 5 5 H 1.48507 * 109.47198 * 30.00118 * 3 2 1 6 6 H 1.48502 * 109.47295 * 150.00112 * 3 2 1 7 7 C 1.38795 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99867 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99833 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46901 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99748 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99560 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99336 * 180.27352 * 13 11 10 15 15 C 1.53006 * 109.46648 * 179.72683 * 14 13 11 16 16 H 1.08997 * 109.50523 * 55.00102 * 15 14 13 17 17 C 1.53118 * 109.50316 * 294.91915 * 15 14 13 18 18 C 1.53120 * 109.16040 * 182.40603 * 17 15 14 19 19 C 1.53031 * 109.27686 * 57.65933 * 18 17 15 20 20 N 1.46846 * 109.52313 * 300.81990 * 19 18 17 21 21 C 1.46905 * 111.00070 * 185.84414 * 20 19 18 22 22 H 1.09000 * 110.42701 * 291.74067 * 21 20 19 23 23 C 1.54632 * 110.48721 * 169.05898 * 21 20 19 24 24 C 1.54481 * 101.76331 * 266.11672 * 23 21 20 25 25 N 1.46767 * 105.47160 * 334.58397 * 24 23 21 26 26 C 1.34417 * 111.30032 * 17.01727 * 25 24 23 27 27 O 1.21287 * 124.93559 * 179.55555 * 26 25 24 28 28 C 1.46849 * 111.23546 * 61.72313 * 20 19 18 29 29 H 0.97000 * 120.00363 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47041 * 59.99797 * 10 9 7 31 31 H 1.08998 * 109.47166 * 299.99818 * 10 9 7 32 32 H 0.96993 * 120.00548 * 0.02562 * 13 11 10 33 33 H 1.08990 * 109.47390 * 299.72564 * 14 13 11 34 34 H 1.09000 * 109.47095 * 59.73180 * 14 13 11 35 35 H 1.09002 * 109.52996 * 302.31325 * 17 15 14 36 36 H 1.09004 * 109.51880 * 62.44029 * 17 15 14 37 37 H 1.09001 * 109.50452 * 177.59853 * 18 17 15 38 38 H 1.08995 * 109.50051 * 297.71415 * 18 17 15 39 39 H 1.08998 * 109.46910 * 60.83593 * 19 18 17 40 40 H 1.09007 * 109.46231 * 180.80730 * 19 18 17 41 41 H 1.09002 * 110.96726 * 24.23537 * 23 21 20 42 42 H 1.09001 * 110.96760 * 147.99538 * 23 21 20 43 43 H 1.08992 * 110.24345 * 215.58425 * 24 23 21 44 44 H 1.09004 * 110.31904 * 93.62199 * 24 23 21 45 45 H 0.97000 * 124.34886 * 196.99367 * 25 24 23 46 46 H 1.08993 * 109.49783 * 178.27996 * 28 20 19 47 47 H 1.08998 * 109.42390 * 58.31153 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7914 -5.5022 -0.0021 13 7 2.8445 -6.3430 -0.0018 14 6 2.3308 -7.7150 -0.0085 15 6 3.5029 -8.6983 -0.0147 16 1 4.1613 -8.4852 0.8275 17 6 4.2842 -8.5542 -1.3236 18 6 5.4186 -9.5824 -1.3477 19 6 4.8307 -10.9869 -1.1933 20 7 4.0939 -11.0739 0.0739 21 6 3.6328 -12.4466 0.3217 22 1 2.8619 -12.7245 -0.3970 23 6 3.1044 -12.5873 1.7681 24 6 4.3587 -13.0946 2.5136 25 7 5.1753 -13.7651 1.4949 26 6 4.7930 -13.4150 0.2547 27 8 5.3045 -13.8167 -0.7691 28 6 2.9706 -10.1284 0.1021 29 1 -0.4851 0.8400 0.0004 30 1 3.1247 -3.7312 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1833 -0.0015 33 1 1.7230 -7.8797 0.8811 34 1 1.7214 -7.8704 -0.8988 35 1 3.6167 -8.7285 -2.1675 36 1 4.7009 -7.5491 -1.3903 37 1 5.9522 -9.5135 -2.2956 38 1 6.1072 -9.3838 -0.5265 39 1 4.1528 -11.1901 -2.0222 40 1 5.6371 -11.7204 -1.1956 41 1 2.7806 -11.6233 2.1605 42 1 2.2977 -13.3185 1.8192 43 1 4.0740 -13.8007 3.2935 44 1 4.9069 -12.2573 2.9454 45 1 5.8981 -14.3813 1.6914 46 1 2.4263 -10.2379 1.0400 47 1 2.3011 -10.3360 -0.7326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752777070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = -74.027906 kcal Electronic energy + Delta-G solvation = -27041.888609 eV Core-core repulsion = 23157.210125 eV Total energy + Delta-G solvation = -3884.678484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19708 -39.52470 -38.54889 -36.84198 -35.24431 -33.31807 -32.42586 -31.74021 -30.33121 -29.26713 -27.55149 -25.86684 -25.36493 -24.18643 -22.41242 -21.80770 -20.48711 -20.40501 -19.93567 -17.89365 -17.83980 -17.42261 -16.31094 -16.04633 -15.84672 -15.49258 -15.12224 -14.99686 -14.80191 -14.48046 -14.39284 -14.19897 -13.95738 -13.90204 -13.51856 -13.41727 -13.20812 -12.97116 -12.71722 -12.54709 -12.22354 -12.06228 -11.81121 -11.74836 -11.39420 -11.06250 -11.02328 -10.96668 -10.88835 -10.75210 -10.63556 -10.14876 -9.81098 -9.57433 -9.39753 -9.06806 -8.89005 -8.82676 -8.23201 -6.49594 -6.21437 -3.91911 2.00196 2.84620 3.03823 3.11532 3.22512 3.27816 3.31482 3.46291 3.71660 3.80308 3.96953 4.20740 4.36525 4.38285 4.50463 4.52807 4.67511 4.85218 4.92705 4.99479 5.04957 5.06745 5.13689 5.14235 5.19681 5.29296 5.33331 5.35430 5.41631 5.47892 5.61312 5.63296 5.71885 5.77500 5.84182 5.90729 5.95916 6.11087 6.14861 6.26362 6.45839 6.54650 6.57644 6.64966 7.59850 7.72024 7.76535 8.35499 8.62796 9.23906 10.85961 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029837 B = 0.001744 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.202067 B =16050.071491 C =16386.409695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.128 3.872 15 C -0.093 4.093 16 H 0.087 0.913 17 C -0.119 4.119 18 C -0.114 4.114 19 C 0.046 3.954 20 N -0.517 5.517 21 C 0.048 3.952 22 H 0.078 0.922 23 C -0.131 4.131 24 C 0.107 3.893 25 N -0.725 5.725 26 C 0.532 3.468 27 O -0.531 6.531 28 C 0.062 3.938 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.411 0.589 46 H 0.084 0.916 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 -28.194 4.144 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.003 3.997 15 C -0.112 4.112 16 H 0.106 0.894 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.081 4.081 20 N -0.244 5.244 21 C -0.064 4.064 22 H 0.096 0.904 23 C -0.169 4.169 24 C -0.017 4.017 25 N -0.380 5.380 26 C 0.316 3.684 27 O -0.407 6.407 28 C -0.066 4.066 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.249 0.751 46 H 0.102 0.898 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.630 -28.443 3.955 30.288 hybrid contribution 2.171 0.854 -0.491 2.384 sum 11.801 -27.589 3.463 30.206 Atomic orbital electron populations 1.70018 1.05942 1.27441 1.46892 1.24994 0.95034 0.99033 0.94561 0.86168 0.79407 0.81573 0.78342 1.20286 1.20758 1.19699 1.22869 0.94909 0.91663 1.58897 0.90929 1.85394 1.04986 0.96332 1.96715 1.23529 1.06533 0.95450 1.04895 1.20293 0.86514 0.86281 0.75151 1.90700 1.15396 1.85631 1.47560 1.45973 1.09915 1.05392 1.77896 1.21223 0.95374 0.80766 1.02365 1.21385 0.97033 0.93409 0.99401 0.89436 1.21689 0.97405 0.99511 0.97073 1.21570 0.97931 0.93466 1.02221 1.22290 0.98259 0.98503 0.89049 1.61908 1.25022 1.02403 1.35046 1.22348 0.95741 0.89646 0.98682 0.90445 1.22771 0.97128 1.03641 0.93362 1.22043 0.91581 0.97379 0.90729 1.46146 1.37096 1.47617 1.07191 1.20596 0.83850 0.80692 0.83235 1.90763 1.59276 1.57814 1.32848 1.22096 0.91561 0.91082 1.01867 0.92194 0.89238 0.89274 0.76817 0.91498 0.91673 0.91764 0.91269 0.91217 0.91086 0.94390 0.89590 0.88068 0.89521 0.90298 0.90351 0.75075 0.89787 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.71 7.85 -10.99 -0.09 9.62 16 12 O -0.52 -11.63 15.86 5.56 0.09 -11.54 16 13 N -0.74 -9.35 5.31 -60.29 -0.32 -9.67 16 14 C 0.13 1.36 5.07 -4.04 -0.02 1.34 16 15 C -0.09 -0.72 2.39 -90.54 -0.22 -0.94 16 16 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 17 C -0.12 -0.94 5.13 -26.61 -0.14 -1.08 16 18 C -0.11 -0.88 6.09 -26.65 -0.16 -1.04 16 19 C 0.05 0.40 5.11 -3.84 -0.02 0.38 16 20 N -0.52 -3.82 4.53 -226.71 -1.03 -4.84 16 21 C 0.05 0.32 2.66 -67.72 -0.18 0.14 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 23 C -0.13 -0.51 6.65 -25.10 -0.17 -0.68 16 24 C 0.11 0.37 7.78 -3.12 -0.02 0.34 16 25 N -0.73 -4.07 6.24 -59.20 -0.37 -4.44 16 26 C 0.53 4.64 7.10 -10.87 -0.08 4.56 16 27 O -0.53 -6.69 16.38 5.55 0.09 -6.60 16 28 C 0.06 0.43 4.59 -3.83 -0.02 0.41 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.40 3.97 7.67 -40.82 -0.31 3.66 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.54 7.26 -51.93 -0.38 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.89 5.79 -51.92 -0.30 0.59 16 41 H 0.10 0.35 6.23 -51.93 -0.32 0.03 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.41 1.76 8.96 -40.82 -0.37 1.39 16 46 H 0.08 0.49 6.23 -51.93 -0.32 0.16 16 47 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -36.47 386.79 -10.36 -46.84 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.47 Total: 0.02 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.69 Total: -2.68 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.98 Total: -44.33 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.18 Total: -18.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.47 -10.36 -46.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.190 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds