Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86797 * 119.99639 * 2 1 4 4 H 1.48497 * 109.47365 * 270.00563 * 3 2 1 5 5 H 1.48507 * 109.47198 * 30.00118 * 3 2 1 6 6 H 1.48502 * 109.47295 * 150.00112 * 3 2 1 7 7 C 1.38795 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99867 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99833 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46901 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99748 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99560 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99336 * 180.27352 * 13 11 10 15 15 C 1.53006 * 109.46648 * 179.72683 * 14 13 11 16 16 H 1.08997 * 109.50523 * 55.00102 * 15 14 13 17 17 C 1.53118 * 109.50316 * 294.91915 * 15 14 13 18 18 C 1.53120 * 109.16040 * 182.40603 * 17 15 14 19 19 C 1.53031 * 109.27686 * 57.65933 * 18 17 15 20 20 N 1.46846 * 109.52313 * 300.81990 * 19 18 17 21 21 C 1.46905 * 111.00070 * 185.84414 * 20 19 18 22 22 H 1.09000 * 110.42701 * 291.74067 * 21 20 19 23 23 C 1.54632 * 110.48721 * 169.05898 * 21 20 19 24 24 C 1.54481 * 101.76331 * 266.11672 * 23 21 20 25 25 N 1.46767 * 105.47160 * 334.58397 * 24 23 21 26 26 C 1.34417 * 111.30032 * 17.01727 * 25 24 23 27 27 O 1.21287 * 124.93559 * 179.55555 * 26 25 24 28 28 C 1.46849 * 111.23546 * 61.72313 * 20 19 18 29 29 H 0.97000 * 120.00363 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47041 * 59.99797 * 10 9 7 31 31 H 1.08998 * 109.47166 * 299.99818 * 10 9 7 32 32 H 0.96993 * 120.00548 * 0.02562 * 13 11 10 33 33 H 1.08990 * 109.47390 * 299.72564 * 14 13 11 34 34 H 1.09000 * 109.47095 * 59.73180 * 14 13 11 35 35 H 1.09002 * 109.52996 * 302.31325 * 17 15 14 36 36 H 1.09004 * 109.51880 * 62.44029 * 17 15 14 37 37 H 1.09001 * 109.50452 * 177.59853 * 18 17 15 38 38 H 1.08995 * 109.50051 * 297.71415 * 18 17 15 39 39 H 1.08998 * 109.46910 * 60.83593 * 19 18 17 40 40 H 1.09007 * 109.46231 * 180.80730 * 19 18 17 41 41 H 1.09002 * 110.96726 * 24.23537 * 23 21 20 42 42 H 1.09001 * 110.96760 * 147.99538 * 23 21 20 43 43 H 1.08992 * 110.24345 * 215.58425 * 24 23 21 44 44 H 1.09004 * 110.31904 * 93.62199 * 24 23 21 45 45 H 0.97000 * 124.34886 * 196.99367 * 25 24 23 46 46 H 1.08993 * 109.49783 * 178.27996 * 28 20 19 47 47 H 1.08998 * 109.42390 * 58.31153 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7914 -5.5022 -0.0021 13 7 2.8445 -6.3430 -0.0018 14 6 2.3308 -7.7150 -0.0085 15 6 3.5029 -8.6983 -0.0147 16 1 4.1613 -8.4852 0.8275 17 6 4.2842 -8.5542 -1.3236 18 6 5.4186 -9.5824 -1.3477 19 6 4.8307 -10.9869 -1.1933 20 7 4.0939 -11.0739 0.0739 21 6 3.6328 -12.4466 0.3217 22 1 2.8619 -12.7245 -0.3970 23 6 3.1044 -12.5873 1.7681 24 6 4.3587 -13.0946 2.5136 25 7 5.1753 -13.7651 1.4949 26 6 4.7930 -13.4150 0.2547 27 8 5.3045 -13.8167 -0.7691 28 6 2.9706 -10.1284 0.1021 29 1 -0.4851 0.8400 0.0004 30 1 3.1247 -3.7312 0.8894 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1833 -0.0015 33 1 1.7230 -7.8797 0.8811 34 1 1.7214 -7.8704 -0.8988 35 1 3.6167 -8.7285 -2.1675 36 1 4.7009 -7.5491 -1.3903 37 1 5.9522 -9.5135 -2.2956 38 1 6.1072 -9.3838 -0.5265 39 1 4.1528 -11.1901 -2.0222 40 1 5.6371 -11.7204 -1.1956 41 1 2.7806 -11.6233 2.1605 42 1 2.2977 -13.3185 1.8192 43 1 4.0740 -13.8007 3.2935 44 1 4.9069 -12.2573 2.9454 45 1 5.8981 -14.3813 1.6914 46 1 2.4263 -10.2379 1.0400 47 1 2.3011 -10.3360 -0.7326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752777070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -103.130701 kcal Electronic energy + Delta-G solvation = -27043.150601 eV Core-core repulsion = 23157.210125 eV Total energy + Delta-G solvation = -3885.940476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77567 -40.69071 -39.46447 -37.47565 -36.22642 -34.56967 -34.10810 -32.65822 -30.80727 -30.64717 -28.09220 -27.68659 -26.61402 -24.75258 -23.13245 -22.29883 -21.68671 -21.04821 -20.71192 -19.78568 -18.41980 -18.09206 -17.70639 -17.16401 -16.86297 -16.64585 -16.49967 -15.93624 -15.77733 -15.62932 -15.19591 -14.99968 -14.92496 -14.68448 -14.49591 -14.42942 -14.20764 -13.89680 -13.80663 -13.52071 -13.15925 -13.14796 -12.91904 -12.86732 -12.58413 -12.46954 -12.18829 -12.05500 -11.73287 -11.64074 -11.54358 -11.28682 -11.12923 -10.95637 -10.78863 -10.25336 -10.06382 -10.05898 -9.46311 -8.64503 -8.33187 -6.10871 1.28438 1.36424 1.43494 1.49142 1.59389 1.65930 2.26855 2.30935 2.42162 2.89842 3.00897 3.26061 3.34643 3.56360 3.68598 3.82304 3.90038 4.02528 4.04331 4.16319 4.30141 4.33270 4.34349 4.42948 4.50453 4.54486 4.54999 4.58327 4.70411 4.76183 4.82023 4.89854 4.91455 5.04385 5.08239 5.15534 5.16048 5.26349 5.40294 5.43585 5.52495 5.79096 5.89469 5.98489 6.01398 6.21430 6.54647 7.08238 7.20010 7.28825 8.75923 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029837 B = 0.001744 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.202067 B =16050.071491 C =16386.409695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.129 3.871 15 C -0.079 4.079 16 H 0.099 0.901 17 C -0.118 4.118 18 C -0.107 4.107 19 C 0.049 3.951 20 N -0.513 5.513 21 C 0.044 3.956 22 H 0.071 0.929 23 C -0.124 4.124 24 C 0.105 3.895 25 N -0.715 5.715 26 C 0.521 3.479 27 O -0.581 6.581 28 C 0.063 3.937 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.415 0.585 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.416 0.584 46 H 0.103 0.897 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.214 -28.329 5.617 31.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.005 3.995 15 C -0.098 4.098 16 H 0.117 0.883 17 C -0.156 4.156 18 C -0.145 4.145 19 C -0.079 4.079 20 N -0.239 5.239 21 C -0.067 4.067 22 H 0.089 0.911 23 C -0.162 4.162 24 C -0.018 4.018 25 N -0.369 5.369 26 C 0.306 3.694 27 O -0.461 6.461 28 C -0.065 4.065 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.102 0.898 45 H 0.256 0.744 46 H 0.121 0.879 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.580 -28.618 5.473 31.353 hybrid contribution 1.632 0.729 -0.931 2.016 sum 13.212 -27.889 4.542 31.193 Atomic orbital electron populations 1.70183 1.07946 1.28569 1.48063 1.26126 0.95974 1.03317 0.93811 0.84959 0.78234 0.76075 0.78742 1.19414 1.20335 1.18146 1.23208 0.95356 0.92031 1.58742 0.89896 1.85570 1.10660 0.99236 1.97044 1.23378 1.03486 0.94497 1.06777 1.20019 0.86217 0.86648 0.75163 1.90691 1.17444 1.86117 1.50271 1.45713 1.10216 1.05085 1.75374 1.21335 0.96487 0.79824 1.01888 1.21257 0.95814 0.92997 0.99709 0.88294 1.21682 0.97294 0.99798 0.96814 1.21510 0.97794 0.92644 1.02554 1.22195 0.97670 0.98578 0.89410 1.61933 1.25065 1.02899 1.34017 1.22419 0.94896 0.88766 1.00652 0.91136 1.22832 0.97691 1.04711 0.90932 1.22261 0.90981 0.98105 0.90475 1.46227 1.36943 1.46919 1.06807 1.20973 0.84169 0.80814 0.83400 1.90729 1.60983 1.59704 1.34658 1.22110 0.91351 0.90369 1.02680 0.92027 0.87149 0.87340 0.74765 0.91468 0.92785 0.92669 0.90746 0.90963 0.90699 0.95602 0.91434 0.87076 0.88016 0.87618 0.89846 0.74413 0.87918 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.22 21.65 0.29 -55.48 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.55 -30.92 9.50 67.95 0.65 -30.27 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.53 18.92 7.85 87.66 0.69 19.61 16 12 O -0.57 -25.61 15.86 -3.02 -0.05 -25.66 16 13 N -0.71 -16.40 5.31 -463.06 -2.46 -18.85 16 14 C 0.13 2.51 5.07 86.38 0.44 2.95 16 15 C -0.08 -1.03 2.39 -10.74 -0.03 -1.06 16 16 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 17 C -0.12 -1.65 5.13 30.67 0.16 -1.49 16 18 C -0.11 -1.51 6.09 30.64 0.19 -1.32 16 19 C 0.05 0.84 5.11 86.32 0.44 1.28 16 20 N -0.51 -6.87 4.53 -871.17 -3.95 -10.82 16 21 C 0.04 0.55 2.66 44.91 0.12 0.67 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 C -0.12 -0.63 6.65 31.65 0.21 -0.42 16 24 C 0.11 0.42 7.78 86.83 0.68 1.09 16 25 N -0.72 -7.01 6.24 -459.81 -2.87 -9.88 16 26 C 0.52 8.95 7.10 87.90 0.62 9.57 16 27 O -0.58 -15.24 16.38 -3.05 -0.05 -15.29 16 28 C 0.06 0.75 4.59 86.33 0.40 1.15 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 31 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 32 H 0.42 6.90 7.67 -92.71 -0.71 6.19 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.97 7.26 -2.38 -0.02 0.95 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 1.44 5.79 -2.38 -0.01 1.42 16 41 H 0.11 0.39 6.23 -2.39 -0.01 0.37 16 42 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.42 3.07 8.96 -92.71 -0.83 2.24 16 46 H 0.10 0.88 6.23 -2.39 -0.01 0.86 16 47 H 0.04 0.49 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -82.48 386.79 -3.31 -85.78 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.55 Total: 16.03 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.46 Total: -1.65 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -8.99 Total: -95.03 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.10 Total: -40.95 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -82.48 -3.31 -85.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.347 kcal (2) G-P(sol) polarization free energy of solvation -82.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds