Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48500 * 109.46891 * 269.99949 * 3 2 1 5 5 H 1.48499 * 109.47246 * 29.99731 * 3 2 1 6 6 H 1.48493 * 109.47198 * 149.99838 * 3 2 1 7 7 C 1.38797 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99655 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00219 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47281 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00004 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99683 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47160 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.50244 * 55.00264 * 15 14 13 17 17 C 1.53121 * 109.53664 * 294.90146 * 15 14 13 18 18 C 1.53114 * 109.15992 * 182.38283 * 17 15 14 19 19 C 1.53036 * 109.28047 * 57.65972 * 18 17 15 20 20 N 1.46844 * 109.52085 * 300.81827 * 19 18 17 21 21 C 1.46899 * 111.00001 * 185.83807 * 20 19 18 22 22 H 1.08996 * 110.43496 * 295.08738 * 21 20 19 23 23 C 1.54624 * 110.48569 * 57.63302 * 21 20 19 24 24 C 1.54684 * 101.67168 * 143.39303 * 23 21 20 25 25 N 1.46769 * 105.53416 * 334.73829 * 24 23 21 26 26 C 1.34415 * 111.29884 * 16.92370 * 25 24 23 27 27 O 1.21282 * 124.94364 * 179.55472 * 26 25 24 28 28 C 1.46847 * 111.19784 * 61.73796 * 20 19 18 29 29 H 0.96994 * 120.00410 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47274 * 59.99828 * 10 9 7 31 31 H 1.09001 * 109.46983 * 299.99912 * 10 9 7 32 32 H 0.97003 * 120.00533 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47298 * 60.00149 * 14 13 11 34 34 H 1.08993 * 109.47628 * 299.99998 * 14 13 11 35 35 H 1.08999 * 109.52397 * 302.29366 * 17 15 14 36 36 H 1.09007 * 109.51903 * 62.47515 * 17 15 14 37 37 H 1.09002 * 109.50460 * 297.71044 * 18 17 15 38 38 H 1.09006 * 109.53560 * 177.62018 * 18 17 15 39 39 H 1.08993 * 109.46063 * 180.80377 * 19 18 17 40 40 H 1.08999 * 109.45181 * 60.82626 * 19 18 17 41 41 H 1.09003 * 110.97159 * 261.59562 * 23 21 20 42 42 H 1.08998 * 110.97298 * 25.35490 * 23 21 20 43 43 H 1.08998 * 110.29853 * 215.67875 * 24 23 21 44 44 H 1.09000 * 110.21331 * 93.75784 * 24 23 21 45 45 H 0.96992 * 124.34895 * 196.94008 * 25 24 23 46 46 H 1.08999 * 109.46500 * 178.23954 * 28 20 19 47 47 H 1.09004 * 109.45191 * 58.27467 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1295 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7914 -5.5023 0.0021 13 7 2.8444 -6.3430 0.0008 14 6 2.3308 -7.7150 0.0019 15 6 3.5029 -8.6984 0.0005 16 1 4.1617 -8.4806 0.8412 17 6 4.2838 -8.5625 -1.3096 18 6 5.4181 -9.5908 -1.3275 19 6 4.8304 -10.9943 -1.1641 20 7 4.0940 -11.0734 0.1039 21 6 3.6331 -12.4444 0.3604 22 1 2.9050 -12.7480 -0.3917 23 6 4.8302 -13.4229 0.3808 24 6 4.4081 -14.4106 1.4939 25 7 3.4931 -13.6585 2.3606 26 6 3.0383 -12.5523 1.7472 27 8 2.2632 -11.7567 2.2344 28 6 2.9707 -10.1278 0.1254 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7312 0.8905 31 1 3.1246 -3.7312 -0.8895 32 1 3.8013 -6.1834 0.0004 33 1 1.7212 -7.8755 -0.8873 34 1 1.7231 -7.8747 0.8926 35 1 3.6159 -8.7420 -2.1520 36 1 4.7012 -7.5581 -1.3822 37 1 6.1071 -9.3869 -0.5078 38 1 5.9521 -9.5279 -2.2757 39 1 5.6368 -11.7276 -1.1621 40 1 4.1522 -11.2024 -1.9916 41 1 4.9339 -13.9325 -0.5771 42 1 5.7520 -12.9060 0.6477 43 1 5.2803 -14.7377 2.0598 44 1 3.8963 -15.2699 1.0606 45 1 3.2483 -13.9252 3.2604 46 1 2.4263 -10.2319 1.0640 47 1 2.3013 -10.3403 -0.7082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752777071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = -72.091446 kcal Electronic energy + Delta-G solvation = -27067.006944 eV Core-core repulsion = 23182.412431 eV Total energy + Delta-G solvation = -3884.594513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12195 -39.42869 -38.49337 -36.85311 -35.23178 -33.26661 -32.38674 -31.60463 -30.41422 -29.10070 -27.55159 -25.81845 -25.32714 -23.85883 -22.91509 -21.43493 -20.47464 -20.30474 -19.87849 -17.87586 -17.74497 -17.36939 -16.28848 -16.14982 -15.67063 -15.34879 -15.20586 -14.95187 -14.76615 -14.50042 -14.37528 -14.23685 -14.03108 -13.73984 -13.40888 -13.29782 -13.05901 -12.85501 -12.69954 -12.51356 -12.41042 -12.05220 -11.79189 -11.67020 -11.34912 -11.03023 -10.98284 -10.93668 -10.79101 -10.75189 -10.64334 -9.89150 -9.76889 -9.58208 -9.30592 -9.02888 -8.78442 -8.72485 -8.17712 -6.44723 -6.17351 -3.87432 2.12161 2.81359 3.09446 3.20609 3.25340 3.30552 3.34432 3.48942 3.74750 3.86493 3.93818 4.24617 4.37080 4.44100 4.48201 4.59496 4.62621 4.83449 4.89615 4.92463 5.02440 5.12348 5.17549 5.18852 5.24581 5.28197 5.33113 5.43520 5.51415 5.52052 5.65323 5.70421 5.77953 5.88239 5.90758 5.97058 6.08913 6.19783 6.20850 6.27309 6.53742 6.61722 6.69588 6.75099 7.63679 7.82204 7.82789 8.39476 8.72312 9.27770 10.90087 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.001804 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.069051 B =15516.482370 C =16083.296972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.128 3.872 15 C -0.091 4.091 16 H 0.085 0.915 17 C -0.120 4.120 18 C -0.115 4.115 19 C 0.053 3.947 20 N -0.518 5.518 21 C 0.049 3.951 22 H 0.079 0.921 23 C -0.128 4.128 24 C 0.103 3.897 25 N -0.732 5.732 26 C 0.530 3.470 27 O -0.516 6.516 28 C 0.044 3.956 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.412 0.588 46 H 0.113 0.887 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.587 -33.052 -1.264 36.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.391 5.391 14 C 0.003 3.997 15 C -0.110 4.110 16 H 0.103 0.897 17 C -0.157 4.157 18 C -0.153 4.153 19 C -0.075 4.075 20 N -0.244 5.244 21 C -0.063 4.063 22 H 0.097 0.903 23 C -0.166 4.166 24 C -0.022 4.022 25 N -0.388 5.388 26 C 0.315 3.685 27 O -0.390 6.390 28 C -0.084 4.084 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.251 0.749 46 H 0.131 0.869 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.338 -32.696 -0.752 35.320 hybrid contribution 1.838 0.870 -0.332 2.061 sum 15.176 -31.827 -1.084 35.276 Atomic orbital electron populations 1.70020 1.05941 1.27400 1.46945 1.24993 0.95025 0.99010 0.94605 0.86168 0.79413 0.81611 0.78302 1.20308 1.20770 1.19710 1.22876 0.94916 0.91712 1.58810 0.90947 1.85404 1.05037 0.96272 1.96698 1.23527 1.06476 0.95500 1.04848 1.20286 0.86545 0.86267 0.75252 1.90701 1.15403 1.85624 1.47550 1.45974 1.09826 1.05476 1.77819 1.21216 0.95487 0.80559 1.02431 1.21359 0.96925 0.93888 0.98868 0.89688 1.21694 0.97324 0.99404 0.97303 1.21568 0.98030 0.93573 1.02105 1.22184 0.97561 0.98402 0.89316 1.61885 1.25611 1.02804 1.34065 1.22273 0.97409 0.91024 0.95635 0.90298 1.22797 0.98605 0.95831 0.99343 1.22093 0.93571 0.94577 0.92000 1.46103 1.48666 1.25699 1.18367 1.20588 0.80032 0.80408 0.87519 1.90708 1.34845 1.42923 1.70555 1.22458 0.91473 0.90483 1.03973 0.92219 0.89266 0.89308 0.76923 0.91781 0.91362 0.91874 0.91366 0.90965 0.91263 0.90481 0.94654 0.89139 0.88591 0.89930 0.90947 0.74885 0.86926 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.63 13.22 55.49 0.73 -25.90 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -15.55 9.50 30.94 0.29 -15.26 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 11 C 0.53 10.46 7.85 -10.98 -0.09 10.38 16 12 O -0.52 -12.45 15.86 5.56 0.09 -12.36 16 13 N -0.74 -10.58 5.31 -60.30 -0.32 -10.90 16 14 C 0.13 1.68 5.07 -4.04 -0.02 1.66 16 15 C -0.09 -0.91 2.39 -90.54 -0.22 -1.13 16 16 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.12 -1.01 5.13 -26.61 -0.14 -1.15 16 18 C -0.11 -0.77 6.09 -26.65 -0.16 -0.93 16 19 C 0.05 0.33 5.25 -3.84 -0.02 0.31 16 20 N -0.52 -4.18 4.50 -226.71 -1.02 -5.20 16 21 C 0.05 0.33 2.66 -67.72 -0.18 0.15 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 C -0.13 -0.40 5.43 -24.99 -0.14 -0.54 16 24 C 0.10 0.25 7.79 -3.01 -0.02 0.23 16 25 N -0.73 -4.09 6.24 -59.09 -0.37 -4.46 16 26 C 0.53 4.86 8.00 -10.86 -0.09 4.78 16 27 O -0.52 -7.00 15.15 5.56 0.08 -6.91 16 28 C 0.04 0.44 4.57 -3.84 -0.02 0.43 16 29 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 32 H 0.40 4.52 7.68 -40.82 -0.31 4.21 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.57 7.26 -51.93 -0.38 0.19 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.35 6.65 -51.93 -0.35 0.00 16 40 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.10 0.34 7.75 -51.93 -0.40 -0.06 16 43 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 45 H 0.41 1.84 8.96 -40.82 -0.37 1.47 16 46 H 0.11 1.43 5.13 -51.93 -0.27 1.16 16 47 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -37.75 386.64 -10.41 -48.16 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.53 Total: 0.95 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.67 Total: -2.04 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.98 Total: -46.46 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.17 Total: -19.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.75 -10.41 -48.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.931 kcal (2) G-P(sol) polarization free energy of solvation -37.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds