Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 119.99665 * 2 1 4 4 H 1.48500 * 109.46891 * 269.99949 * 3 2 1 5 5 H 1.48499 * 109.47246 * 29.99731 * 3 2 1 6 6 H 1.48493 * 109.47198 * 149.99838 * 3 2 1 7 7 C 1.38797 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99655 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00219 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47281 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00004 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99683 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47160 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.50244 * 55.00264 * 15 14 13 17 17 C 1.53121 * 109.53664 * 294.90146 * 15 14 13 18 18 C 1.53114 * 109.15992 * 182.38283 * 17 15 14 19 19 C 1.53036 * 109.28047 * 57.65972 * 18 17 15 20 20 N 1.46844 * 109.52085 * 300.81827 * 19 18 17 21 21 C 1.46899 * 111.00001 * 185.83807 * 20 19 18 22 22 H 1.08996 * 110.43496 * 295.08738 * 21 20 19 23 23 C 1.54624 * 110.48569 * 57.63302 * 21 20 19 24 24 C 1.54684 * 101.67168 * 143.39303 * 23 21 20 25 25 N 1.46769 * 105.53416 * 334.73829 * 24 23 21 26 26 C 1.34415 * 111.29884 * 16.92370 * 25 24 23 27 27 O 1.21282 * 124.94364 * 179.55472 * 26 25 24 28 28 C 1.46847 * 111.19784 * 61.73796 * 20 19 18 29 29 H 0.96994 * 120.00410 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47274 * 59.99828 * 10 9 7 31 31 H 1.09001 * 109.46983 * 299.99912 * 10 9 7 32 32 H 0.97003 * 120.00533 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47298 * 60.00149 * 14 13 11 34 34 H 1.08993 * 109.47628 * 299.99998 * 14 13 11 35 35 H 1.08999 * 109.52397 * 302.29366 * 17 15 14 36 36 H 1.09007 * 109.51903 * 62.47515 * 17 15 14 37 37 H 1.09002 * 109.50460 * 297.71044 * 18 17 15 38 38 H 1.09006 * 109.53560 * 177.62018 * 18 17 15 39 39 H 1.08993 * 109.46063 * 180.80377 * 19 18 17 40 40 H 1.08999 * 109.45181 * 60.82626 * 19 18 17 41 41 H 1.09003 * 110.97159 * 261.59562 * 23 21 20 42 42 H 1.08998 * 110.97298 * 25.35490 * 23 21 20 43 43 H 1.08998 * 110.29853 * 215.67875 * 24 23 21 44 44 H 1.09000 * 110.21331 * 93.75784 * 24 23 21 45 45 H 0.96992 * 124.34895 * 196.94008 * 25 24 23 46 46 H 1.08999 * 109.46500 * 178.23954 * 28 20 19 47 47 H 1.09004 * 109.45191 * 58.27467 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1295 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7914 -5.5023 0.0021 13 7 2.8444 -6.3430 0.0008 14 6 2.3308 -7.7150 0.0019 15 6 3.5029 -8.6984 0.0005 16 1 4.1617 -8.4806 0.8412 17 6 4.2838 -8.5625 -1.3096 18 6 5.4181 -9.5908 -1.3275 19 6 4.8304 -10.9943 -1.1641 20 7 4.0940 -11.0734 0.1039 21 6 3.6331 -12.4444 0.3604 22 1 2.9050 -12.7480 -0.3917 23 6 4.8302 -13.4229 0.3808 24 6 4.4081 -14.4106 1.4939 25 7 3.4931 -13.6585 2.3606 26 6 3.0383 -12.5523 1.7472 27 8 2.2632 -11.7567 2.2344 28 6 2.9707 -10.1278 0.1254 29 1 -0.4850 0.8400 -0.0004 30 1 3.1246 -3.7312 0.8905 31 1 3.1246 -3.7312 -0.8895 32 1 3.8013 -6.1834 0.0004 33 1 1.7212 -7.8755 -0.8873 34 1 1.7231 -7.8747 0.8926 35 1 3.6159 -8.7420 -2.1520 36 1 4.7012 -7.5581 -1.3822 37 1 6.1071 -9.3869 -0.5078 38 1 5.9521 -9.5279 -2.2757 39 1 5.6368 -11.7276 -1.1621 40 1 4.1522 -11.2024 -1.9916 41 1 4.9339 -13.9325 -0.5771 42 1 5.7520 -12.9060 0.6477 43 1 5.2803 -14.7377 2.0598 44 1 3.8963 -15.2699 1.0606 45 1 3.2483 -13.9252 3.2604 46 1 2.4263 -10.2319 1.0640 47 1 2.3013 -10.3403 -0.7082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752777071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = -102.736250 kcal Electronic energy + Delta-G solvation = -27068.335802 eV Core-core repulsion = 23182.412431 eV Total energy + Delta-G solvation = -3885.923371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70351 -40.73498 -39.45046 -37.50129 -36.30642 -34.58706 -34.14277 -32.54431 -31.04906 -30.44028 -28.03458 -27.71894 -26.64043 -24.55098 -23.48601 -22.00408 -21.77288 -21.01595 -20.71480 -19.81090 -18.38994 -17.93564 -17.77397 -17.32543 -16.88013 -16.73152 -16.40461 -16.04000 -15.82133 -15.59180 -15.21442 -15.00959 -14.91901 -14.72107 -14.65559 -14.37078 -13.98803 -13.83462 -13.77932 -13.44161 -13.20206 -13.16706 -13.00194 -12.88227 -12.63419 -12.51985 -12.12486 -12.04982 -11.74253 -11.65367 -11.51665 -11.34708 -11.14205 -10.96230 -10.59060 -10.27890 -10.14386 -10.05251 -9.36672 -8.67519 -8.34423 -6.13104 1.26263 1.42891 1.45807 1.48570 1.57727 1.59885 2.23035 2.27990 2.37870 2.94200 2.99525 3.31342 3.32975 3.58729 3.70103 3.83390 3.90083 3.99806 4.10921 4.15123 4.24185 4.28924 4.36111 4.42233 4.48204 4.49741 4.49982 4.63425 4.72789 4.80143 4.84134 4.89972 4.98331 5.06425 5.09391 5.16093 5.20053 5.29128 5.38959 5.41849 5.50535 5.82922 5.97569 6.03328 6.12593 6.19994 6.49238 7.06453 7.22929 7.24472 8.74941 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027659 B = 0.001804 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.069051 B =15516.482370 C =16083.296972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.128 4.128 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.708 5.708 14 C 0.130 3.870 15 C -0.077 4.077 16 H 0.084 0.916 17 C -0.118 4.118 18 C -0.111 4.111 19 C 0.052 3.948 20 N -0.523 5.523 21 C 0.045 3.955 22 H 0.081 0.919 23 C -0.117 4.117 24 C 0.099 3.901 25 N -0.724 5.724 26 C 0.513 3.487 27 O -0.575 6.575 28 C 0.049 3.951 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.416 0.584 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.035 0.965 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.416 0.584 46 H 0.084 0.916 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.664 -34.522 -2.222 39.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.279 4.279 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.362 5.362 14 C 0.006 3.994 15 C -0.096 4.096 16 H 0.103 0.897 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.075 4.075 20 N -0.249 5.249 21 C -0.066 4.066 22 H 0.099 0.901 23 C -0.155 4.155 24 C -0.024 4.024 25 N -0.379 5.379 26 C 0.299 3.701 27 O -0.454 6.454 28 C -0.079 4.079 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.253 0.747 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.054 0.946 41 H 0.137 0.863 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.110 0.890 45 H 0.255 0.745 46 H 0.102 0.898 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 17.509 -34.251 -1.716 38.505 hybrid contribution 0.602 1.130 -0.007 1.280 sum 18.111 -33.122 -1.723 37.789 Atomic orbital electron populations 1.70191 1.08030 1.28619 1.48010 1.26167 0.95993 1.03419 0.93722 0.84920 0.78163 0.75845 0.78832 1.19195 1.20324 1.18145 1.23209 0.95387 0.91887 1.58884 0.89788 1.85622 1.10688 0.99358 1.97058 1.23360 1.03523 0.94083 1.06912 1.20138 0.86211 0.86796 0.75102 1.90690 1.17584 1.86172 1.50289 1.45696 1.10253 1.04875 1.75386 1.21272 0.96792 0.80326 1.01060 1.21223 0.95480 0.92818 1.00120 0.89722 1.21695 0.97721 1.00511 0.95647 1.21563 0.97168 0.93009 1.03099 1.22297 0.97996 0.98963 0.88237 1.61875 1.24542 1.03141 1.35328 1.22392 0.99140 0.91105 0.93992 0.90104 1.22862 0.96700 0.94872 1.01031 1.22396 0.93904 0.94476 0.91638 1.46237 1.48090 1.24793 1.18745 1.21189 0.79590 0.80584 0.88729 1.90678 1.37507 1.45153 1.72062 1.22240 0.92221 0.91260 1.02205 0.91999 0.87214 0.86904 0.74666 0.92567 0.93463 0.92388 0.90953 0.90929 0.89446 0.87796 0.94621 0.86316 0.88473 0.87666 0.88961 0.74521 0.89803 0.95289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.55 -31.83 9.50 67.95 0.65 -31.19 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.15 -8.87 20.57 -56.49 -1.16 -10.03 16 10 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 11 C 0.53 21.12 7.85 87.66 0.69 21.81 16 12 O -0.57 -28.41 15.86 -3.02 -0.05 -28.46 16 13 N -0.71 -19.96 5.31 -463.07 -2.46 -22.42 16 14 C 0.13 3.51 5.07 86.38 0.44 3.95 16 15 C -0.08 -1.52 2.39 -10.74 -0.03 -1.55 16 16 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 17 C -0.12 -1.78 5.13 30.67 0.16 -1.63 16 18 C -0.11 -1.16 6.09 30.64 0.19 -0.97 16 19 C 0.05 0.50 5.25 86.33 0.45 0.96 16 20 N -0.52 -7.83 4.50 -871.19 -3.92 -11.75 16 21 C 0.05 0.55 2.66 44.91 0.12 0.67 16 22 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 23 C -0.12 -0.34 5.43 31.72 0.17 -0.17 16 24 C 0.10 0.18 7.79 86.90 0.68 0.85 16 25 N -0.72 -7.34 6.24 -459.44 -2.87 -10.21 16 26 C 0.51 9.56 8.00 87.90 0.70 10.26 16 27 O -0.57 -16.84 15.15 -3.04 -0.05 -16.89 16 28 C 0.05 1.03 4.57 86.32 0.39 1.42 16 29 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 31 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 32 H 0.42 8.66 7.68 -92.71 -0.71 7.94 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.03 7.26 -2.38 -0.02 1.02 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.10 0.49 6.65 -2.39 -0.02 0.47 16 40 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.10 0.32 7.75 -2.39 -0.02 0.30 16 43 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.42 3.49 8.96 -92.71 -0.83 2.65 16 46 H 0.08 2.33 5.13 -2.39 -0.01 2.31 16 47 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -87.48 386.64 -3.23 -90.71 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.55 Total: 18.86 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.51 Total: 0.72 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -8.96 Total: -101.26 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.09 Total: -45.34 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -87.48 -3.23 -90.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.029 kcal (2) G-P(sol) polarization free energy of solvation -87.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds