Wall clock time and date at job start Sat Apr 11 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47089 * 300.00145 * 3 2 1 6 6 H 1.48501 * 109.47085 * 60.00018 * 3 2 1 7 7 C 1.38804 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99406 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00316 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99887 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47094 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00012 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00202 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00359 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47739 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.49826 * 304.92536 * 15 14 13 17 17 C 1.53118 * 109.49923 * 64.99597 * 15 14 13 18 18 C 1.53123 * 109.15822 * 177.59723 * 17 15 14 19 19 C 1.53032 * 109.31165 * 302.32985 * 18 17 15 20 20 N 1.46928 * 109.47982 * 59.15904 * 19 18 17 21 21 C 1.46900 * 110.98555 * 174.18050 * 20 19 18 22 22 H 1.09003 * 110.43468 * 173.96585 * 21 20 19 23 23 C 1.54630 * 110.48813 * 51.42424 * 21 20 19 24 24 C 1.54832 * 101.60626 * 266.07922 * 23 21 20 25 25 N 1.46765 * 105.49312 * 334.56954 * 24 23 21 26 26 C 1.34420 * 111.30173 * 17.03340 * 25 24 23 27 27 O 1.21284 * 124.94418 * 179.55725 * 26 25 24 28 28 C 1.46847 * 111.22226 * 298.28278 * 20 19 18 29 29 H 0.96993 * 120.00280 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47599 * 59.99350 * 10 9 7 31 31 H 1.09003 * 109.46719 * 299.99390 * 10 9 7 32 32 H 0.97000 * 119.99970 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.46950 * 60.00130 * 14 13 11 34 34 H 1.09003 * 109.47114 * 300.00349 * 14 13 11 35 35 H 1.09008 * 109.51985 * 57.69876 * 17 15 14 36 36 H 1.08994 * 109.57934 * 297.53619 * 17 15 14 37 37 H 1.08995 * 109.50319 * 62.29489 * 18 17 15 38 38 H 1.09000 * 109.50267 * 182.36770 * 18 17 15 39 39 H 1.09003 * 109.46658 * 179.21731 * 19 18 17 40 40 H 1.09006 * 109.46526 * 299.18245 * 19 18 17 41 41 H 1.08997 * 110.96670 * 24.23892 * 23 21 20 42 42 H 1.09000 * 110.96835 * 147.99852 * 23 21 20 43 43 H 1.08993 * 110.22020 * 215.56885 * 24 23 21 44 44 H 1.08996 * 110.32438 * 93.61862 * 24 23 21 45 45 H 0.96999 * 124.34674 * 197.01367 * 25 24 23 46 46 H 1.09003 * 109.45880 * 301.72943 * 28 20 19 47 47 H 1.08990 * 109.45587 * 181.75267 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0013 11 6 1.9874 -5.3027 -0.0030 12 8 0.7912 -5.5023 -0.0040 13 7 2.8441 -6.3431 -0.0035 14 6 2.3305 -7.7150 -0.0045 15 6 3.5025 -8.6986 -0.0055 16 1 4.1592 -8.4812 -0.8478 17 6 4.2864 -8.5609 1.3026 18 6 5.4207 -9.5893 1.3194 19 6 4.8332 -10.9934 1.1596 20 7 4.0932 -11.0736 -0.1072 21 6 3.6316 -12.4450 -0.3608 22 1 2.9951 -12.4748 -1.2451 23 6 2.8751 -12.9976 0.8694 24 6 4.0062 -13.7387 1.6236 25 7 4.9940 -14.0940 0.5978 26 6 4.8105 -13.3786 -0.5253 27 8 5.4915 -13.4681 -1.5249 28 6 2.9699 -10.1280 -0.1274 29 1 -0.4850 0.8400 0.0004 30 1 3.1239 -3.7317 0.8891 31 1 3.1251 -3.7309 -0.8909 32 1 3.8009 -6.1835 -0.0023 33 1 1.7222 -7.8745 -0.8948 34 1 1.7215 -7.8757 0.8852 35 1 3.6203 -8.7394 2.1469 36 1 4.7040 -7.5567 1.3742 37 1 6.1078 -9.3867 0.4980 38 1 5.9566 -9.5246 2.2664 39 1 5.6398 -11.7265 1.1573 40 1 4.1568 -11.2006 1.9889 41 1 2.4672 -12.1869 1.4730 42 1 2.0894 -13.6893 0.5658 43 1 3.6155 -14.6385 2.0987 44 1 4.4561 -13.0838 2.3696 45 1 5.6900 -14.7593 0.7155 46 1 2.3023 -10.3394 0.7079 47 1 2.4236 -10.2333 -1.0647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752777072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:20 Heat of formation + Delta-G solvation = -70.427201 kcal Electronic energy + Delta-G solvation = -27129.411006 eV Core-core repulsion = 23244.888660 eV Total energy + Delta-G solvation = -3884.522346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49591 -39.50957 -38.58928 -36.81380 -35.09674 -33.36614 -32.42540 -31.74079 -30.30132 -29.20308 -27.86149 -25.89888 -25.37251 -24.12508 -22.50616 -22.33675 -20.47472 -20.27484 -19.85737 -17.92952 -17.84908 -17.40318 -16.31706 -16.17204 -15.73945 -15.50764 -15.33418 -14.83890 -14.79979 -14.59492 -14.48872 -14.34680 -13.92622 -13.86701 -13.50114 -13.34835 -13.28311 -12.99702 -12.75457 -12.57330 -12.35730 -12.16384 -11.90075 -11.77092 -11.44532 -11.06858 -11.01505 -11.01002 -10.87763 -10.74338 -10.67733 -10.30342 -9.79949 -9.67225 -9.39616 -9.07430 -8.87487 -8.77426 -8.22503 -6.49368 -6.21471 -3.91728 2.04076 2.78680 3.03645 3.11764 3.21887 3.27917 3.32013 3.42809 3.74067 3.78535 3.91800 4.20809 4.23210 4.30947 4.37149 4.45491 4.52960 4.74459 4.80627 4.90491 4.94329 5.03288 5.05185 5.13817 5.15549 5.21133 5.25425 5.30677 5.35055 5.37049 5.49180 5.58727 5.67374 5.75020 5.79936 5.90340 5.93276 6.07736 6.15279 6.22495 6.45237 6.51061 6.52393 6.64471 7.60400 7.72191 7.78734 8.35903 8.63002 9.24088 10.86045 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034008 B = 0.001721 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.145777 B =16263.490730 C =16526.393320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.128 3.872 15 C -0.095 4.095 16 H 0.089 0.911 17 C -0.118 4.118 18 C -0.117 4.117 19 C 0.047 3.953 20 N -0.513 5.513 21 C 0.053 3.947 22 H 0.118 0.882 23 C -0.171 4.171 24 C 0.098 3.902 25 N -0.734 5.734 26 C 0.531 3.469 27 O -0.517 6.517 28 C 0.064 3.936 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.411 0.589 46 H 0.044 0.956 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.410 -29.624 5.623 31.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.003 3.997 15 C -0.114 4.114 16 H 0.107 0.893 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.081 4.081 20 N -0.238 5.238 21 C -0.059 4.059 22 H 0.136 0.864 23 C -0.210 4.210 24 C -0.027 4.027 25 N -0.391 5.391 26 C 0.316 3.684 27 O -0.390 6.390 28 C -0.063 4.063 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.250 0.750 46 H 0.062 0.938 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.836 -29.682 4.673 31.320 hybrid contribution 2.134 0.760 0.840 2.417 sum 10.970 -28.922 5.513 31.420 Atomic orbital electron populations 1.70024 1.05949 1.27336 1.46988 1.24997 0.95031 0.99044 0.94563 0.86114 0.79593 0.81883 0.77891 1.19615 1.20568 1.20582 1.22915 0.94952 0.91653 1.58777 0.90871 1.85389 1.04999 0.96351 1.96708 1.23530 1.06532 0.95442 1.04909 1.20292 0.86511 0.86280 0.75142 1.90700 1.15396 1.85632 1.47573 1.45971 1.09928 1.05390 1.77893 1.21216 0.95337 0.80763 1.02376 1.21406 0.97125 0.93487 0.99431 0.89303 1.21673 0.97250 0.99566 0.97062 1.21595 0.98142 0.93463 1.02314 1.22385 0.97467 0.98492 0.89736 1.61922 1.24882 1.02649 1.34310 1.22483 0.94909 0.88789 0.99706 0.86404 1.23349 0.98064 1.01541 0.98079 1.22234 0.89131 1.00404 0.90920 1.46237 1.34845 1.42733 1.15334 1.20602 0.84894 0.80528 0.82413 1.90769 1.49824 1.67471 1.30911 1.22058 0.91364 0.90951 1.01963 0.92246 0.89270 0.89224 0.76809 0.91454 0.91680 0.91767 0.91185 0.90862 0.91233 0.90814 0.93915 0.88766 0.89129 0.90146 0.90702 0.75010 0.93810 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.75 7.85 -10.99 -0.09 9.66 16 12 O -0.52 -11.65 15.86 5.56 0.09 -11.57 16 13 N -0.74 -9.41 5.31 -60.29 -0.32 -9.73 16 14 C 0.13 1.37 5.07 -4.04 -0.02 1.35 16 15 C -0.10 -0.74 2.39 -90.54 -0.22 -0.96 16 16 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.12 -0.83 5.13 -26.61 -0.14 -0.97 16 18 C -0.12 -0.76 6.09 -26.65 -0.16 -0.93 16 19 C 0.05 0.29 3.72 -3.79 -0.01 0.28 16 20 N -0.51 -3.73 4.64 -226.64 -1.05 -4.78 16 21 C 0.05 0.35 3.12 -67.72 -0.21 0.14 16 22 H 0.12 0.77 8.02 -51.93 -0.42 0.35 16 23 C -0.17 -0.61 6.07 -24.91 -0.15 -0.76 16 24 C 0.10 0.28 6.80 -2.93 -0.02 0.26 16 25 N -0.73 -3.79 5.85 -59.01 -0.35 -4.14 16 26 C 0.53 4.66 6.99 -10.86 -0.08 4.58 16 27 O -0.52 -6.98 18.03 5.55 0.10 -6.88 16 28 C 0.06 0.44 4.50 -3.84 -0.02 0.42 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 32 H 0.40 4.01 7.67 -40.82 -0.31 3.70 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.07 0.51 7.25 -51.93 -0.38 0.13 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.50 6.28 -51.93 -0.33 0.17 16 40 H 0.04 0.21 5.76 -51.93 -0.30 -0.08 16 41 H 0.09 0.31 5.87 -51.93 -0.30 0.01 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 44 H 0.07 0.19 6.24 -51.93 -0.32 -0.14 16 45 H 0.41 1.61 8.96 -40.82 -0.37 1.24 16 46 H 0.04 0.26 6.90 -51.93 -0.36 -0.09 16 47 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -37.23 381.76 -10.24 -47.47 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.27 Total: -0.50 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.69 Total: -2.73 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.98 Total: -44.07 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.19 Total: -18.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.23 -10.24 -47.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.956 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds