Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48498 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47089 * 300.00145 * 3 2 1 6 6 H 1.48501 * 109.47085 * 60.00018 * 3 2 1 7 7 C 1.38804 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99406 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00316 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99887 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47094 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00012 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00202 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00359 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47739 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.49826 * 304.92536 * 15 14 13 17 17 C 1.53118 * 109.49923 * 64.99597 * 15 14 13 18 18 C 1.53123 * 109.15822 * 177.59723 * 17 15 14 19 19 C 1.53032 * 109.31165 * 302.32985 * 18 17 15 20 20 N 1.46928 * 109.47982 * 59.15904 * 19 18 17 21 21 C 1.46900 * 110.98555 * 174.18050 * 20 19 18 22 22 H 1.09003 * 110.43468 * 173.96585 * 21 20 19 23 23 C 1.54630 * 110.48813 * 51.42424 * 21 20 19 24 24 C 1.54832 * 101.60626 * 266.07922 * 23 21 20 25 25 N 1.46765 * 105.49312 * 334.56954 * 24 23 21 26 26 C 1.34420 * 111.30173 * 17.03340 * 25 24 23 27 27 O 1.21284 * 124.94418 * 179.55725 * 26 25 24 28 28 C 1.46847 * 111.22226 * 298.28278 * 20 19 18 29 29 H 0.96993 * 120.00280 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47599 * 59.99350 * 10 9 7 31 31 H 1.09003 * 109.46719 * 299.99390 * 10 9 7 32 32 H 0.97000 * 119.99970 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.46950 * 60.00130 * 14 13 11 34 34 H 1.09003 * 109.47114 * 300.00349 * 14 13 11 35 35 H 1.09008 * 109.51985 * 57.69876 * 17 15 14 36 36 H 1.08994 * 109.57934 * 297.53619 * 17 15 14 37 37 H 1.08995 * 109.50319 * 62.29489 * 18 17 15 38 38 H 1.09000 * 109.50267 * 182.36770 * 18 17 15 39 39 H 1.09003 * 109.46658 * 179.21731 * 19 18 17 40 40 H 1.09006 * 109.46526 * 299.18245 * 19 18 17 41 41 H 1.08997 * 110.96670 * 24.23892 * 23 21 20 42 42 H 1.09000 * 110.96835 * 147.99852 * 23 21 20 43 43 H 1.08993 * 110.22020 * 215.56885 * 24 23 21 44 44 H 1.08996 * 110.32438 * 93.61862 * 24 23 21 45 45 H 0.96999 * 124.34674 * 197.01367 * 25 24 23 46 46 H 1.09003 * 109.45880 * 301.72943 * 28 20 19 47 47 H 1.08990 * 109.45587 * 181.75267 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0013 11 6 1.9874 -5.3027 -0.0030 12 8 0.7912 -5.5023 -0.0040 13 7 2.8441 -6.3431 -0.0035 14 6 2.3305 -7.7150 -0.0045 15 6 3.5025 -8.6986 -0.0055 16 1 4.1592 -8.4812 -0.8478 17 6 4.2864 -8.5609 1.3026 18 6 5.4207 -9.5893 1.3194 19 6 4.8332 -10.9934 1.1596 20 7 4.0932 -11.0736 -0.1072 21 6 3.6316 -12.4450 -0.3608 22 1 2.9951 -12.4748 -1.2451 23 6 2.8751 -12.9976 0.8694 24 6 4.0062 -13.7387 1.6236 25 7 4.9940 -14.0940 0.5978 26 6 4.8105 -13.3786 -0.5253 27 8 5.4915 -13.4681 -1.5249 28 6 2.9699 -10.1280 -0.1274 29 1 -0.4850 0.8400 0.0004 30 1 3.1239 -3.7317 0.8891 31 1 3.1251 -3.7309 -0.8909 32 1 3.8009 -6.1835 -0.0023 33 1 1.7222 -7.8745 -0.8948 34 1 1.7215 -7.8757 0.8852 35 1 3.6203 -8.7394 2.1469 36 1 4.7040 -7.5567 1.3742 37 1 6.1078 -9.3867 0.4980 38 1 5.9566 -9.5246 2.2664 39 1 5.6398 -11.7265 1.1573 40 1 4.1568 -11.2006 1.9889 41 1 2.4672 -12.1869 1.4730 42 1 2.0894 -13.6893 0.5658 43 1 3.6155 -14.6385 2.0987 44 1 4.4561 -13.0838 2.3696 45 1 5.6900 -14.7593 0.7155 46 1 2.3023 -10.3394 0.7079 47 1 2.4236 -10.2333 -1.0647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752777072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = -100.578705 kcal Electronic energy + Delta-G solvation = -27130.718473 eV Core-core repulsion = 23244.888660 eV Total energy + Delta-G solvation = -3885.829813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.01853 -40.69165 -39.46644 -37.51384 -36.02673 -34.57824 -34.09536 -32.60271 -30.87401 -30.45326 -28.33698 -27.70723 -26.61204 -24.64588 -23.13559 -22.78449 -21.72378 -20.96898 -20.44624 -19.80021 -18.44387 -18.05745 -17.66138 -17.23262 -16.87275 -16.63660 -16.46394 -15.95321 -15.83943 -15.46934 -15.28846 -15.06353 -15.00986 -14.64012 -14.54470 -14.40361 -14.01621 -13.89666 -13.75222 -13.56218 -13.15428 -13.14402 -12.98658 -12.89609 -12.58679 -12.49936 -12.33090 -12.02613 -11.71221 -11.62257 -11.44613 -11.27880 -11.15113 -11.04366 -10.87534 -10.25939 -10.14589 -10.07281 -9.25851 -8.65271 -8.34100 -6.11670 1.28121 1.40687 1.41945 1.48806 1.59637 1.64691 2.25967 2.29699 2.39101 2.92617 3.00117 3.32940 3.33838 3.51437 3.69986 3.80214 3.89341 3.97623 4.02014 4.10699 4.20234 4.31645 4.32776 4.41331 4.53009 4.53522 4.54608 4.59117 4.66826 4.74324 4.79231 4.88452 4.91327 5.00999 5.02358 5.09011 5.18133 5.29091 5.41558 5.43217 5.52855 5.77116 5.96254 6.01124 6.04923 6.20955 6.52940 7.07495 7.22148 7.27282 8.75362 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.034008 B = 0.001721 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.145777 B =16263.490730 C =16526.393320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.711 5.711 14 C 0.129 3.871 15 C -0.083 4.083 16 H 0.083 0.917 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.048 3.952 20 N -0.530 5.530 21 C 0.052 3.948 22 H 0.113 0.887 23 C -0.162 4.162 24 C 0.095 3.905 25 N -0.722 5.722 26 C 0.523 3.477 27 O -0.577 6.577 28 C 0.068 3.932 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.414 0.586 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.417 0.583 46 H 0.058 0.942 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.998 -30.342 7.163 33.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.005 3.995 15 C -0.102 4.102 16 H 0.101 0.899 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.079 4.079 20 N -0.255 5.255 21 C -0.060 4.060 22 H 0.131 0.869 23 C -0.201 4.201 24 C -0.028 4.028 25 N -0.377 5.377 26 C 0.308 3.692 27 O -0.455 6.455 28 C -0.060 4.060 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.251 0.749 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.104 0.896 45 H 0.256 0.744 46 H 0.076 0.924 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.466 -30.455 6.263 32.806 hybrid contribution 1.691 0.824 0.387 1.921 sum 12.157 -29.630 6.650 32.710 Atomic orbital electron populations 1.70183 1.07947 1.28533 1.48096 1.26126 0.95976 1.03312 0.93790 0.84906 0.78610 0.76368 0.78065 1.18058 1.20005 1.19884 1.23245 0.95356 0.92050 1.58703 0.89936 1.85554 1.10600 0.99206 1.97037 1.23380 1.03521 0.94535 1.06741 1.20014 0.86218 0.86630 0.75165 1.90689 1.17394 1.86112 1.50272 1.45729 1.10196 1.05166 1.75374 1.21336 0.96471 0.79776 1.01904 1.21274 0.95778 0.93319 0.99857 0.89890 1.21658 0.97351 0.99781 0.96499 1.21563 0.97702 0.93448 1.02458 1.22392 0.97524 0.98083 0.89894 1.61841 1.25292 1.03100 1.35251 1.22451 0.94247 0.88197 1.01127 0.86921 1.23343 0.98210 1.01970 0.96560 1.22464 0.88334 1.01755 0.90235 1.46278 1.34943 1.41661 1.14797 1.21032 0.84941 0.80911 0.82298 1.90728 1.52053 1.69487 1.33252 1.21998 0.91402 0.90119 1.02502 0.92001 0.87170 0.87412 0.74861 0.92317 0.91836 0.91278 0.91249 0.92257 0.89928 0.91453 0.92039 0.87838 0.87918 0.87671 0.89599 0.74359 0.92433 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -31.11 9.50 67.96 0.65 -30.47 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.53 19.21 7.85 87.66 0.69 19.90 16 12 O -0.57 -25.77 15.86 -3.03 -0.05 -25.82 16 13 N -0.71 -16.95 5.31 -463.07 -2.46 -19.41 16 14 C 0.13 2.58 5.07 86.38 0.44 3.02 16 15 C -0.08 -1.15 2.39 -10.74 -0.03 -1.17 16 16 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 17 C -0.12 -1.35 5.13 30.67 0.16 -1.20 16 18 C -0.11 -1.24 6.09 30.65 0.19 -1.05 16 19 C 0.05 0.49 3.72 86.31 0.32 0.81 16 20 N -0.53 -6.95 4.64 -870.95 -4.04 -10.99 16 21 C 0.05 0.62 3.12 44.91 0.14 0.76 16 22 H 0.11 1.42 8.02 -2.39 -0.02 1.40 16 23 C -0.16 -0.70 6.07 31.78 0.19 -0.51 16 24 C 0.10 0.26 6.80 86.95 0.59 0.85 16 25 N -0.72 -6.36 5.85 -459.20 -2.69 -9.05 16 26 C 0.52 8.98 6.99 87.90 0.61 9.60 16 27 O -0.58 -16.21 18.03 -3.04 -0.05 -16.27 16 28 C 0.07 0.81 4.50 86.32 0.39 1.20 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 31 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 32 H 0.41 7.33 7.67 -92.71 -0.71 6.62 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 36 H 0.07 0.83 7.25 -2.39 -0.02 0.81 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.79 6.28 -2.39 -0.01 0.77 16 40 H 0.06 0.40 5.76 -2.38 -0.01 0.39 16 41 H 0.10 0.31 5.87 -2.39 -0.01 0.30 16 42 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.09 0.11 6.24 -2.39 -0.01 0.10 16 45 H 0.42 2.73 8.96 -92.71 -0.83 1.90 16 46 H 0.06 0.54 6.90 -2.39 -0.02 0.52 16 47 H 0.08 1.02 8.04 -2.39 -0.02 1.00 16 Total: -1.00 -84.32 381.76 -3.44 -87.76 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -0.54 Total: 15.08 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.24 Total: -1.75 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -8.90 Total: -95.07 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.10 Total: -42.08 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -84.32 -3.44 -87.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.817 kcal (2) G-P(sol) polarization free energy of solvation -84.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds