Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47223 * 270.00127 * 3 2 1 5 5 H 1.48494 * 109.47070 * 30.00580 * 3 2 1 6 6 H 1.48505 * 109.46776 * 150.00169 * 3 2 1 7 7 C 1.38815 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99808 * 160.28309 * 7 2 1 9 9 N 1.36930 * 120.00148 * 340.27702 * 7 2 1 10 10 C 1.46504 * 119.99941 * 320.54053 * 9 7 2 11 11 C 1.53001 * 109.47195 * 269.99564 * 10 9 7 12 12 N 1.46495 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00527 * 180.02562 * 12 11 10 14 14 O 1.21627 * 119.99518 * 0.02562 * 13 12 11 15 15 C 1.47289 * 120.00470 * 179.97438 * 13 12 11 16 16 C 1.37960 * 126.80518 * 0.03049 * 15 13 12 17 17 N 1.34160 * 107.88455 * 179.97438 * 16 15 13 18 18 H 0.96998 * 125.15825 * 180.02562 * 17 16 15 19 19 N 1.39764 * 109.67455 * 359.97438 * 17 16 15 20 20 C 1.31361 * 109.08187 * 359.74109 * 19 17 16 21 21 C 1.48297 * 126.51479 * 180.26204 * 20 19 17 22 22 C 1.39798 * 120.54223 * 325.14910 * 21 20 19 23 23 C 1.38404 * 118.30931 * 179.97438 * 22 21 20 24 24 C 1.38315 * 119.28953 * 0.02562 * 23 22 21 25 25 N 1.31899 * 121.03624 * 0.02562 * 24 23 22 26 26 C 1.31746 * 121.85201 * 359.65912 * 25 24 23 27 27 C 1.46498 * 119.99929 * 140.54232 * 9 7 2 28 28 C 1.53000 * 117.50131 * 3.28780 * 27 9 7 29 29 C 1.52999 * 117.50051 * 294.66297 * 27 9 7 30 30 H 0.96999 * 120.00063 * 355.02691 * 1 2 3 31 31 H 1.09004 * 109.46736 * 150.00129 * 10 9 7 32 32 H 1.08996 * 109.47022 * 30.00293 * 10 9 7 33 33 H 1.09000 * 109.47703 * 300.00804 * 11 10 9 34 34 H 1.09010 * 109.46755 * 60.00168 * 11 10 9 35 35 H 0.97006 * 119.99465 * 0.02562 * 12 11 10 36 36 H 1.08000 * 126.05919 * 359.97438 * 16 15 13 37 37 H 1.08004 * 120.84945 * 359.97438 * 22 21 20 38 38 H 1.08009 * 120.35633 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.48639 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.69647 * 180.31642 * 26 25 24 41 41 H 1.08999 * 115.55210 * 148.99733 * 27 9 7 42 42 H 1.08999 * 117.49519 * 359.97438 * 28 27 9 43 43 H 1.08998 * 117.49923 * 145.02445 * 28 27 9 44 44 H 1.08993 * 117.50133 * 214.98371 * 29 27 9 45 45 H 1.09006 * 117.49665 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0427 -1.2295 -0.3161 9 7 1.3857 -2.3534 0.3991 10 6 0.4639 -2.3295 1.5376 11 6 1.2391 -2.6056 2.8274 12 7 0.3175 -2.5810 3.9659 13 6 0.7804 -2.7995 5.2126 14 8 1.9636 -3.0166 5.3926 15 6 -0.1461 -2.7742 6.3573 16 6 -1.5055 -2.5429 6.3153 17 7 -1.9734 -2.6072 7.5711 18 1 -2.9001 -2.4823 7.8290 19 7 -0.9230 -2.8826 8.4510 20 6 0.1921 -2.9970 7.7662 21 6 1.5381 -3.2917 8.3145 22 6 1.9195 -2.7975 9.5654 23 6 3.1863 -3.1014 10.0328 24 6 4.0268 -3.8765 9.2544 25 7 3.6394 -4.3279 8.0772 26 6 2.4414 -4.0700 7.5935 27 6 1.6395 -3.6091 -0.3116 28 6 2.6699 -3.5851 -1.4423 29 6 1.1795 -3.7019 -1.7679 30 1 -0.4850 0.8369 0.0728 31 1 -0.3005 -3.0947 1.4022 32 1 -0.0098 -1.3499 1.6009 33 1 1.7130 -3.5852 2.7641 34 1 2.0036 -1.8403 2.9627 35 1 -0.6260 -2.4074 3.8223 36 1 -2.0896 -2.3450 5.4287 37 1 1.2428 -2.1940 10.1522 38 1 3.5150 -2.7371 10.9950 39 1 5.0162 -4.1151 9.6158 40 1 2.1587 -4.4617 6.6276 41 1 1.5777 -4.5130 0.2942 42 1 3.1587 -2.6349 -1.6576 43 1 3.2863 -4.4733 -1.5805 44 1 0.8155 -4.6670 -2.1201 45 1 0.6877 -2.8289 -2.1970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753161663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = 127.060418 kcal Electronic energy + Delta-G solvation = -28658.201873 eV Core-core repulsion = 24679.092033 eV Total energy + Delta-G solvation = -3979.109840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39920 -39.80676 -38.85516 -37.08102 -34.79509 -33.55374 -33.19324 -31.97026 -31.22117 -30.36667 -30.05786 -27.47603 -24.57308 -24.22580 -23.63993 -22.94388 -21.70492 -21.26390 -20.50007 -19.92364 -19.69762 -18.60006 -17.09936 -16.61572 -16.16354 -16.00090 -15.67400 -15.49695 -15.29906 -15.09361 -14.60491 -14.47809 -14.04398 -13.83527 -13.73798 -13.65423 -13.10787 -12.95514 -12.65368 -12.61470 -11.93083 -11.90574 -11.57552 -11.24756 -11.06000 -10.74660 -10.72547 -10.55158 -10.35773 -10.15969 -9.90071 -9.78362 -9.63303 -9.58736 -9.43602 -9.28879 -9.10120 -8.63017 -8.54908 -8.44219 -6.61304 -5.87235 -3.53220 0.75085 1.30355 1.34862 2.15424 2.40772 3.30351 3.38848 3.44051 3.52226 3.58848 3.88025 4.06998 4.37113 4.40998 4.61939 4.78069 4.89125 4.93077 4.95208 5.07200 5.20297 5.24477 5.27807 5.35963 5.46559 5.82843 5.90805 5.91058 6.04020 6.09587 6.12426 6.19343 6.21384 6.28898 6.50933 6.51583 6.61782 6.70082 6.80923 6.86188 6.97433 7.07119 7.20450 7.22883 7.45532 7.74426 7.91208 8.04220 8.42296 8.58856 9.07132 9.67650 10.25456 11.08210 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.002749 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.539325 B =10184.289015 C =10501.564496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.017 3.983 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.547 5.547 10 C 0.142 3.858 11 C 0.100 3.900 12 N -0.715 5.715 13 C 0.583 3.417 14 O -0.540 6.540 15 C -0.273 4.273 16 C 0.109 3.891 17 N -0.464 5.464 18 H 0.444 0.556 19 N -0.284 5.284 20 C 0.174 3.826 21 C -0.082 4.082 22 C -0.046 4.046 23 C -0.190 4.190 24 C 0.107 3.893 25 N -0.488 5.488 26 C 0.170 3.830 27 C 0.119 3.881 28 C -0.194 4.194 29 C -0.220 4.220 30 H 0.254 0.746 31 H 0.032 0.968 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.393 0.607 36 H 0.192 0.808 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.177 0.823 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -6.199 16.671 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.184 4.184 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.264 5.264 10 C 0.015 3.985 11 C -0.025 4.025 12 N -0.365 5.365 13 C 0.370 3.630 14 O -0.419 6.419 15 C -0.288 4.288 16 C -0.041 4.041 17 N -0.170 5.170 18 H 0.289 0.711 19 N -0.106 5.106 20 C 0.005 3.995 21 C -0.086 4.086 22 C -0.073 4.073 23 C -0.210 4.210 24 C -0.050 4.050 25 N -0.196 5.196 26 C 0.012 3.988 27 C 0.011 3.989 28 C -0.232 4.232 29 C -0.260 4.260 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.209 0.791 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.194 0.806 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.047 -6.719 17.348 19.039 hybrid contribution -0.983 1.844 -0.359 2.120 sum -5.030 -4.876 16.989 18.377 Atomic orbital electron populations 1.70052 1.05515 1.26202 1.50814 1.25219 0.95031 0.98827 0.99334 0.86439 0.79789 0.83493 0.77927 1.21102 1.21454 1.20065 1.19041 0.93441 0.84938 1.41503 0.91709 1.43160 1.51030 1.03397 1.28801 1.21002 0.91031 1.02861 0.83636 1.22358 0.93442 1.01287 0.85430 1.45925 1.12291 1.71738 1.06498 1.17161 0.87071 0.76914 0.81844 1.90746 1.16411 1.50117 1.84622 1.21469 0.93034 1.20363 0.93961 1.23112 0.94692 0.96545 0.89777 1.45913 1.10535 1.56202 1.04303 0.71132 1.77298 0.94346 1.23567 1.15341 1.21565 0.91816 0.96199 0.89965 1.18693 0.91434 1.02691 0.95808 1.21589 0.95982 0.96084 0.93685 1.21991 0.94967 1.01962 1.02062 1.22931 0.99474 0.92566 0.89989 1.67868 1.16691 1.22106 1.12935 1.23496 0.86903 0.90633 0.97802 1.21245 1.00858 0.90337 0.86488 1.23021 0.92168 1.01917 1.06132 1.23340 0.96922 1.00946 1.04835 0.93573 0.94981 0.88432 0.92821 0.91422 0.77361 0.79133 0.84821 0.84728 0.82835 0.80650 0.89489 0.88439 0.90719 0.91262 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.68 11.50 55.49 0.64 -23.04 16 2 C 0.02 0.43 4.98 -17.43 -0.09 0.35 16 3 Si 0.89 20.91 29.60 -169.99 -5.03 15.88 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.72 8.47 -15.06 -0.13 -6.84 16 8 H 0.07 1.71 6.75 -52.48 -0.35 1.35 16 9 N -0.55 -12.79 2.75 -165.66 -0.46 -13.24 16 10 C 0.14 2.95 5.45 -4.04 -0.02 2.93 16 11 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 12 N -0.71 -10.85 5.55 -61.43 -0.34 -11.19 16 13 C 0.58 9.30 7.68 -12.58 -0.10 9.21 16 14 O -0.54 -10.38 12.49 5.25 0.07 -10.31 16 15 C -0.27 -3.57 6.27 -102.95 -0.65 -4.21 16 16 C 0.11 0.96 11.50 -16.64 -0.19 0.77 16 17 N -0.46 -3.84 7.20 30.81 0.22 -3.62 16 18 H 0.44 1.93 8.96 -182.85 -1.64 0.29 16 19 N -0.28 -3.39 12.64 34.57 0.44 -2.95 16 20 C 0.17 2.36 6.96 -80.56 -0.56 1.80 16 21 C -0.08 -1.16 5.74 -104.77 -0.60 -1.76 16 22 C -0.05 -0.55 9.92 -38.94 -0.39 -0.93 16 23 C -0.19 -1.95 10.10 -39.49 -0.40 -2.35 16 24 C 0.11 1.26 11.17 -17.49 -0.20 1.06 16 25 N -0.49 -7.38 10.35 -12.96 -0.13 -7.51 16 26 C 0.17 2.64 8.96 -17.18 -0.15 2.48 16 27 C 0.12 2.47 6.56 -67.93 -0.45 2.03 16 28 C -0.19 -3.78 9.80 -26.73 -0.26 -4.04 16 29 C -0.22 -4.37 10.36 -26.73 -0.28 -4.64 16 30 H 0.25 6.60 8.32 -40.82 -0.34 6.26 16 31 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.10 2.27 5.59 -51.93 -0.29 1.98 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.49 8.14 -51.92 -0.42 1.06 16 35 H 0.39 4.75 7.43 -40.82 -0.30 4.44 16 36 H 0.19 0.93 7.48 -52.49 -0.39 0.53 16 37 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.18 2.92 5.70 -52.49 -0.30 2.62 16 41 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.10 2.07 6.46 -51.93 -0.34 1.74 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -33.02 381.09 -10.30 -43.32 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.97 Total: 9.22 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.48 Total: -2.29 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: 0.37 Total: -61.56 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.02 -10.30 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753161663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.382 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds