Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47223 * 270.00127 * 3 2 1 5 5 H 1.48494 * 109.47070 * 30.00580 * 3 2 1 6 6 H 1.48505 * 109.46776 * 150.00169 * 3 2 1 7 7 C 1.38815 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99808 * 160.28309 * 7 2 1 9 9 N 1.36930 * 120.00148 * 340.27702 * 7 2 1 10 10 C 1.46504 * 119.99941 * 320.54053 * 9 7 2 11 11 C 1.53001 * 109.47195 * 269.99564 * 10 9 7 12 12 N 1.46495 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00527 * 180.02562 * 12 11 10 14 14 O 1.21627 * 119.99518 * 0.02562 * 13 12 11 15 15 C 1.47289 * 120.00470 * 179.97438 * 13 12 11 16 16 C 1.37960 * 126.80518 * 0.03049 * 15 13 12 17 17 N 1.34160 * 107.88455 * 179.97438 * 16 15 13 18 18 H 0.96998 * 125.15825 * 180.02562 * 17 16 15 19 19 N 1.39764 * 109.67455 * 359.97438 * 17 16 15 20 20 C 1.31361 * 109.08187 * 359.74109 * 19 17 16 21 21 C 1.48297 * 126.51479 * 180.26204 * 20 19 17 22 22 C 1.39798 * 120.54223 * 325.14910 * 21 20 19 23 23 C 1.38404 * 118.30931 * 179.97438 * 22 21 20 24 24 C 1.38315 * 119.28953 * 0.02562 * 23 22 21 25 25 N 1.31899 * 121.03624 * 0.02562 * 24 23 22 26 26 C 1.31746 * 121.85201 * 359.65912 * 25 24 23 27 27 C 1.46498 * 119.99929 * 140.54232 * 9 7 2 28 28 C 1.53000 * 117.50131 * 3.28780 * 27 9 7 29 29 C 1.52999 * 117.50051 * 294.66297 * 27 9 7 30 30 H 0.96999 * 120.00063 * 355.02691 * 1 2 3 31 31 H 1.09004 * 109.46736 * 150.00129 * 10 9 7 32 32 H 1.08996 * 109.47022 * 30.00293 * 10 9 7 33 33 H 1.09000 * 109.47703 * 300.00804 * 11 10 9 34 34 H 1.09010 * 109.46755 * 60.00168 * 11 10 9 35 35 H 0.97006 * 119.99465 * 0.02562 * 12 11 10 36 36 H 1.08000 * 126.05919 * 359.97438 * 16 15 13 37 37 H 1.08004 * 120.84945 * 359.97438 * 22 21 20 38 38 H 1.08009 * 120.35633 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.48639 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.69647 * 180.31642 * 26 25 24 41 41 H 1.08999 * 115.55210 * 148.99733 * 27 9 7 42 42 H 1.08999 * 117.49519 * 359.97438 * 28 27 9 43 43 H 1.08998 * 117.49923 * 145.02445 * 28 27 9 44 44 H 1.08993 * 117.50133 * 214.98371 * 29 27 9 45 45 H 1.09006 * 117.49665 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0427 -1.2295 -0.3161 9 7 1.3857 -2.3534 0.3991 10 6 0.4639 -2.3295 1.5376 11 6 1.2391 -2.6056 2.8274 12 7 0.3175 -2.5810 3.9659 13 6 0.7804 -2.7995 5.2126 14 8 1.9636 -3.0166 5.3926 15 6 -0.1461 -2.7742 6.3573 16 6 -1.5055 -2.5429 6.3153 17 7 -1.9734 -2.6072 7.5711 18 1 -2.9001 -2.4823 7.8290 19 7 -0.9230 -2.8826 8.4510 20 6 0.1921 -2.9970 7.7662 21 6 1.5381 -3.2917 8.3145 22 6 1.9195 -2.7975 9.5654 23 6 3.1863 -3.1014 10.0328 24 6 4.0268 -3.8765 9.2544 25 7 3.6394 -4.3279 8.0772 26 6 2.4414 -4.0700 7.5935 27 6 1.6395 -3.6091 -0.3116 28 6 2.6699 -3.5851 -1.4423 29 6 1.1795 -3.7019 -1.7679 30 1 -0.4850 0.8369 0.0728 31 1 -0.3005 -3.0947 1.4022 32 1 -0.0098 -1.3499 1.6009 33 1 1.7130 -3.5852 2.7641 34 1 2.0036 -1.8403 2.9627 35 1 -0.6260 -2.4074 3.8223 36 1 -2.0896 -2.3450 5.4287 37 1 1.2428 -2.1940 10.1522 38 1 3.5150 -2.7371 10.9950 39 1 5.0162 -4.1151 9.6158 40 1 2.1587 -4.4617 6.6276 41 1 1.5777 -4.5130 0.2942 42 1 3.1587 -2.6349 -1.6576 43 1 3.2863 -4.4733 -1.5805 44 1 0.8155 -4.6670 -2.1201 45 1 0.6877 -2.8289 -2.1970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753161663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 104.481562 kcal Electronic energy + Delta-G solvation = -28659.180965 eV Core-core repulsion = 24679.092033 eV Total energy + Delta-G solvation = -3980.088933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.28938 -40.74417 -40.13440 -38.75784 -36.25780 -34.97563 -34.41317 -32.88807 -32.83020 -31.51672 -31.04188 -29.05240 -26.33161 -25.16822 -24.63323 -24.13928 -23.18233 -22.81568 -21.55361 -21.46494 -20.89007 -19.56372 -18.24834 -17.99517 -17.43819 -17.13477 -17.09991 -16.79622 -16.58492 -16.24703 -16.12179 -15.80127 -15.44567 -14.93069 -14.85644 -14.68879 -14.42224 -14.29465 -13.97744 -13.84316 -13.67445 -13.23351 -12.91506 -12.81236 -12.61137 -12.47847 -12.14687 -12.12178 -11.89769 -11.63257 -11.45074 -11.32743 -11.00601 -10.85534 -10.59517 -10.49037 -10.41722 -10.11654 -9.82095 -9.50579 -8.50515 -7.81480 -5.51558 -0.19526 0.36562 0.51287 1.17551 1.42185 1.46670 1.55465 1.69401 2.26602 2.42629 2.51414 2.92068 3.15884 3.19196 3.43116 3.55294 3.61469 3.72858 3.97317 4.02801 4.10872 4.16232 4.33305 4.34730 4.41524 4.43728 4.47779 4.57215 4.61598 4.66784 4.86614 4.91532 4.97418 5.02362 5.07683 5.21458 5.25135 5.29710 5.37157 5.53504 5.58320 5.69181 5.76909 5.79105 6.18077 6.37090 6.46965 6.74073 7.06967 7.15394 7.39186 7.81891 8.33551 9.08750 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.002749 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.539325 B =10184.289015 C =10501.564496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.022 4.022 3 Si 0.944 3.056 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.265 4.265 8 H 0.052 0.948 9 N -0.565 5.565 10 C 0.150 3.850 11 C 0.124 3.876 12 N -0.706 5.706 13 C 0.583 3.417 14 O -0.580 6.580 15 C -0.312 4.312 16 C 0.146 3.854 17 N -0.442 5.442 18 H 0.464 0.536 19 N -0.295 5.295 20 C 0.158 3.842 21 C -0.097 4.097 22 C -0.052 4.052 23 C -0.175 4.175 24 C 0.096 3.904 25 N -0.521 5.521 26 C 0.146 3.854 27 C 0.101 3.899 28 C -0.187 4.187 29 C -0.210 4.210 30 H 0.253 0.747 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.410 0.590 36 H 0.237 0.763 37 H 0.152 0.848 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.152 0.848 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 -6.424 18.220 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.220 4.220 3 Si 0.772 3.228 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.396 4.396 8 H 0.070 0.930 9 N -0.283 5.283 10 C 0.024 3.976 11 C -0.002 4.002 12 N -0.357 5.357 13 C 0.372 3.628 14 O -0.461 6.461 15 C -0.327 4.327 16 C -0.006 4.006 17 N -0.150 5.150 18 H 0.313 0.687 19 N -0.117 5.117 20 C -0.010 4.010 21 C -0.102 4.102 22 C -0.079 4.079 23 C -0.194 4.194 24 C -0.060 4.060 25 N -0.230 5.230 26 C -0.012 4.012 27 C -0.007 4.007 28 C -0.225 4.225 29 C -0.251 4.251 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.247 0.753 36 H 0.253 0.747 37 H 0.170 0.830 38 H 0.193 0.807 39 H 0.202 0.798 40 H 0.169 0.831 41 H 0.129 0.871 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.448 -6.951 18.920 20.879 hybrid contribution -0.590 1.867 -0.784 2.109 sum -6.038 -5.084 18.136 19.779 Atomic orbital electron populations 1.70125 1.06163 1.26487 1.51966 1.25707 0.95685 1.00823 0.99832 0.85677 0.78583 0.80926 0.77609 1.21071 1.21216 1.20550 1.19109 0.93151 0.86316 1.40987 0.93010 1.43367 1.51277 1.03676 1.29990 1.20881 0.91001 1.02118 0.83627 1.21784 0.92888 0.99477 0.86074 1.45651 1.12612 1.71933 1.05482 1.17562 0.87068 0.75772 0.82415 1.90738 1.18430 1.51762 1.85212 1.21244 0.94435 1.24257 0.92775 1.23649 0.93216 0.92766 0.90987 1.45967 1.10970 1.54213 1.03811 0.68669 1.77239 0.94516 1.23884 1.16060 1.21623 0.92126 0.96879 0.90414 1.18845 0.91810 1.02776 0.96725 1.21905 0.97019 0.95989 0.93005 1.22416 0.93829 1.00103 1.03044 1.23513 1.01036 0.92409 0.89084 1.67779 1.16871 1.23522 1.14868 1.23170 0.87926 0.92382 0.97680 1.21538 1.01997 0.90074 0.87108 1.23027 0.92242 1.02172 1.05022 1.23236 0.96978 1.01101 1.03757 0.93729 0.93192 0.90640 0.93427 0.95204 0.75331 0.74723 0.83001 0.80681 0.79805 0.83076 0.87089 0.90879 0.87377 0.87948 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.02 11.50 21.65 0.25 -48.77 16 2 C -0.02 -1.16 4.98 84.86 0.42 -0.74 16 3 Si 0.94 43.73 29.60 68.60 2.03 45.76 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 7 C -0.27 -14.04 8.47 84.04 0.71 -13.33 16 8 H 0.05 2.82 6.75 -2.91 -0.02 2.80 16 9 N -0.57 -26.73 2.75 -678.03 -1.86 -28.59 16 10 C 0.15 6.29 5.45 86.38 0.47 6.76 16 11 C 0.12 4.82 6.00 86.38 0.52 5.34 16 12 N -0.71 -21.40 5.55 -466.50 -2.59 -23.99 16 13 C 0.58 19.03 7.68 86.62 0.67 19.70 16 14 O -0.58 -23.67 12.49 -4.12 -0.05 -23.72 16 15 C -0.31 -7.96 6.27 -18.78 -0.12 -8.08 16 16 C 0.15 2.14 11.50 84.27 0.97 3.11 16 17 N -0.44 -5.97 7.20 -56.43 -0.41 -6.38 16 18 H 0.46 2.27 8.96 -213.54 -1.91 0.36 16 19 N -0.30 -6.55 12.64 -44.53 -0.56 -7.11 16 20 C 0.16 4.27 6.96 44.07 0.31 4.57 16 21 C -0.10 -2.80 5.74 -19.96 -0.11 -2.91 16 22 C -0.05 -1.18 9.92 22.69 0.22 -0.95 16 23 C -0.17 -3.25 10.10 22.33 0.23 -3.03 16 24 C 0.10 2.18 11.17 84.70 0.95 3.13 16 25 N -0.52 -16.41 10.35 -194.92 -2.02 -18.42 16 26 C 0.15 4.82 8.96 84.97 0.76 5.59 16 27 C 0.10 4.09 6.56 44.99 0.30 4.39 16 28 C -0.19 -7.09 9.80 30.60 0.30 -6.79 16 29 C -0.21 -8.12 10.36 30.59 0.32 -7.80 16 30 H 0.25 13.26 8.32 -92.71 -0.77 12.49 16 31 H 0.05 1.88 8.07 -2.38 -0.02 1.86 16 32 H 0.08 3.56 5.59 -2.39 -0.01 3.54 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.41 9.32 7.43 -92.70 -0.69 8.63 16 36 H 0.24 1.19 7.48 -2.91 -0.02 1.16 16 37 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.15 5.57 5.70 -2.91 -0.02 5.55 16 41 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 42 H 0.07 3.14 6.46 -2.39 -0.02 3.13 16 43 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 44 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 45 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -76.30 381.09 0.15 -76.16 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -1.55 Total: 26.12 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.90 Total: 8.95 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -7.19 Total: -133.27 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.30 0.15 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753161663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.638 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds