Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47214 * 269.99706 * 3 2 1 5 5 H 1.48497 * 109.47489 * 29.99849 * 3 2 1 6 6 H 1.48506 * 109.47121 * 149.99845 * 3 2 1 7 7 C 1.38815 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99541 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99753 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46831 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47274 * 64.99906 * 11 10 9 13 13 N 1.46504 * 109.46949 * 304.99791 * 11 10 9 14 14 C 1.34777 * 119.99858 * 155.00496 * 13 11 10 15 15 O 1.21553 * 119.99924 * 359.97438 * 14 13 11 16 16 C 1.47940 * 119.99993 * 180.27088 * 14 13 11 17 17 C 1.39501 * 119.59076 * 179.72074 * 16 14 13 18 18 C 1.38229 * 119.18129 * 180.02562 * 17 16 14 19 19 C 1.39785 * 118.39397 * 0.02562 * 18 17 16 20 20 C 1.48264 * 120.44212 * 180.02562 * 19 18 17 21 21 C 1.40948 * 126.24891 * 359.67954 * 20 19 18 22 22 N 1.30635 * 108.07366 * 179.82364 * 21 20 19 23 23 N 1.39993 * 108.56270 * 0.44354 * 22 21 20 24 24 H 0.97007 * 125.87105 * 179.73747 * 23 22 21 25 25 C 1.34718 * 108.26542 * 359.71686 * 23 22 21 26 26 C 1.39747 * 119.12224 * 359.97438 * 19 18 17 27 27 N 1.31307 * 120.72597 * 359.72187 * 26 19 18 28 28 C 1.52997 * 109.46984 * 184.99740 * 11 10 9 29 29 C 1.53000 * 117.49911 * 248.74711 * 28 11 10 30 30 C 1.53001 * 117.49991 * 180.08338 * 28 11 10 31 31 H 0.97004 * 119.99953 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00110 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47397 * 59.99720 * 10 9 7 34 34 H 1.09000 * 109.46612 * 299.99208 * 10 9 7 35 35 H 0.97001 * 120.00416 * 334.99597 * 13 11 10 36 36 H 1.07992 * 120.41203 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.80370 * 179.97438 * 18 17 16 38 38 H 1.08004 * 125.96155 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.20285 * 180.02562 * 25 23 22 40 40 H 1.07992 * 119.64078 * 179.97438 * 26 19 18 41 41 H 1.08998 * 115.54987 * 34.41696 * 28 11 10 42 42 H 1.08997 * 117.50065 * 359.97438 * 29 28 11 43 43 H 1.08998 * 117.49818 * 145.02524 * 29 28 11 44 44 H 1.08996 * 117.50037 * 214.97866 * 30 28 11 45 45 H 1.08995 * 117.49751 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 1 5.8942 -1.6979 0.9324 13 7 5.9516 -1.3232 -1.1304 14 6 7.0496 -0.5433 -1.0792 15 8 7.7613 -0.5598 -0.0939 16 6 7.3849 0.3378 -2.2193 17 6 8.5202 1.1459 -2.1547 18 6 8.8252 1.9663 -3.2246 19 6 7.9770 1.9529 -4.3355 20 6 8.2614 2.8143 -5.5083 21 6 9.3460 3.7039 -5.6454 22 7 9.2547 4.2769 -6.8159 23 7 8.1134 3.7888 -7.4632 24 1 7.8053 4.0490 -8.3455 25 6 7.5167 2.8952 -6.6505 26 6 6.8578 1.1161 -4.3267 27 7 6.6040 0.3461 -3.2937 28 6 6.3803 -3.5109 -0.1246 29 6 7.1793 -3.9832 1.0917 30 6 7.9087 -3.4436 -0.1412 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3621 0.0007 33 1 3.8491 -3.0424 -0.8891 34 1 3.8484 -3.0426 0.8909 35 1 5.3835 -1.3098 -1.9166 36 1 9.1525 1.1314 -1.2794 37 1 9.6974 2.6029 -3.2023 38 1 10.1196 3.8787 -4.9123 39 1 6.6136 2.3427 -6.8638 40 1 6.1966 1.0994 -5.1803 41 1 5.9034 -4.2734 -0.7405 42 1 7.1611 -3.3536 1.9813 43 1 7.2285 -5.0564 1.2757 44 1 8.4374 -4.1620 -0.7677 45 1 8.3699 -2.4591 -0.0631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754444993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 118.547340 kcal Electronic energy + Delta-G solvation = -28620.730870 eV Core-core repulsion = 24641.251876 eV Total energy + Delta-G solvation = -3979.478995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74190 -40.55253 -39.25335 -37.15425 -35.14833 -33.90709 -33.25394 -32.19221 -31.84487 -31.27995 -29.43620 -28.23299 -24.84376 -24.21315 -23.76573 -22.17709 -21.99414 -21.44961 -21.20000 -20.57009 -20.05610 -18.66112 -18.22952 -17.38711 -16.73724 -15.84281 -15.56300 -15.44165 -15.24646 -15.17235 -14.88370 -14.67344 -14.47533 -14.06587 -13.87131 -13.62249 -13.38345 -13.17414 -13.07992 -12.74198 -12.34527 -12.19269 -11.88858 -11.35560 -11.29068 -11.22110 -11.02254 -10.85268 -10.64308 -10.28268 -10.20493 -10.16204 -10.04030 -9.91129 -9.78724 -9.58868 -9.52069 -8.91223 -8.73962 -8.31770 -7.24046 -5.76480 -3.12015 0.29979 1.08396 1.44370 2.24514 2.35065 2.97383 3.21957 3.39391 3.44743 3.46673 3.86428 3.97670 4.08928 4.21835 4.32511 4.56695 4.60558 4.61187 4.77831 4.78444 4.87340 4.99982 5.11803 5.13425 5.24647 5.36249 5.43554 5.52307 5.54986 5.62449 5.79467 5.82547 5.84099 5.92583 5.95179 6.03000 6.09527 6.32119 6.39336 6.42951 6.47568 6.60996 6.68534 6.84767 7.09245 7.54752 7.86831 7.99028 8.38398 8.42474 9.21178 9.93723 10.13151 11.41760 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.003361 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.093087 B = 8328.920853 C =10678.051172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.162 3.838 12 H 0.090 0.910 13 N -0.690 5.690 14 C 0.571 3.429 15 O -0.540 6.540 16 C 0.070 3.930 17 C -0.101 4.101 18 C -0.087 4.087 19 C -0.025 4.025 20 C -0.204 4.204 21 C 0.072 3.928 22 N -0.293 5.293 23 N -0.470 5.470 24 H 0.444 0.556 25 C 0.086 3.914 26 C 0.097 3.903 27 N -0.444 5.444 28 C -0.162 4.162 29 C -0.170 4.170 30 C -0.185 4.185 31 H 0.259 0.741 32 H 0.363 0.637 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.415 0.585 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.159 0.841 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.865 2.467 -13.287 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.026 3.974 11 C 0.058 3.942 12 H 0.108 0.892 13 N -0.339 5.339 14 C 0.356 3.644 15 O -0.418 6.418 16 C -0.068 4.068 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.029 4.029 20 C -0.216 4.216 21 C -0.116 4.116 22 N -0.114 5.114 23 N -0.176 5.176 24 H 0.288 0.712 25 C -0.064 4.064 26 C -0.064 4.064 27 N -0.154 5.154 28 C -0.182 4.182 29 C -0.207 4.207 30 C -0.222 4.222 31 H 0.069 0.931 32 H 0.196 0.804 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.252 0.748 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.205 0.795 39 H 0.203 0.797 40 H 0.176 0.824 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.895 2.634 -13.359 24.940 hybrid contribution 0.321 1.323 -0.333 1.402 sum 21.216 3.957 -13.692 25.559 Atomic orbital electron populations 1.69696 1.05045 1.25780 1.57588 1.24629 0.95169 0.97058 1.01983 0.86604 0.79286 0.85182 0.77850 1.21018 1.21731 1.20416 1.19039 0.80470 0.94748 1.43014 0.89061 1.42697 1.04099 1.02094 1.91191 1.20900 0.86799 0.89866 0.99879 1.20945 0.95408 0.88154 0.89716 0.89247 1.45899 1.25835 1.41132 1.21043 1.17799 0.81393 0.79605 0.85600 1.90698 1.51032 1.67689 1.32428 1.21195 0.93671 0.98275 0.93651 1.22019 0.96603 0.94178 0.99398 1.21473 0.99360 0.98315 0.92096 1.19232 0.95502 0.95374 0.92792 1.18772 1.00334 1.06368 0.96165 1.24041 0.98299 0.94374 0.94853 1.77266 1.03256 1.22334 1.08549 1.46252 1.20478 1.33308 1.17560 0.71193 1.22765 0.98813 0.93739 0.91053 1.22745 0.94983 0.92183 0.96478 1.67513 1.28509 1.19635 0.99748 1.22617 0.93708 0.99016 1.02852 1.22905 1.04350 1.00758 0.92702 1.23256 0.94042 1.04027 1.00886 0.93077 0.80422 0.94748 0.93711 0.74817 0.83293 0.84172 0.79488 0.79730 0.82352 0.87610 0.88712 0.89096 0.89829 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 22.74 27.74 -169.99 -4.71 18.02 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 9 N -0.75 -17.97 5.24 -59.90 -0.31 -18.29 16 10 C 0.15 2.92 5.80 -4.04 -0.02 2.90 16 11 C 0.16 2.68 2.43 -67.93 -0.17 2.51 16 12 H 0.09 1.62 7.33 -51.93 -0.38 1.24 16 13 N -0.69 -11.29 4.49 -54.72 -0.25 -11.53 16 14 C 0.57 9.33 7.13 -12.29 -0.09 9.24 16 15 O -0.54 -9.56 13.33 5.32 0.07 -9.49 16 16 C 0.07 1.01 6.75 -82.99 -0.56 0.45 16 17 C -0.10 -1.19 9.61 -39.11 -0.38 -1.56 16 18 C -0.09 -0.80 9.68 -39.01 -0.38 -1.18 16 19 C -0.03 -0.24 5.90 -104.63 -0.62 -0.86 16 20 C -0.20 -1.65 6.05 -105.34 -0.64 -2.28 16 21 C 0.07 0.57 11.45 -17.03 -0.20 0.37 16 22 N -0.29 -2.57 12.66 30.82 0.39 -2.18 16 23 N -0.47 -2.88 7.32 30.65 0.22 -2.66 16 24 H 0.44 1.30 8.96 -182.67 -1.64 -0.34 16 25 C 0.09 0.52 11.40 -16.88 -0.19 0.33 16 26 C 0.10 1.05 10.73 -17.21 -0.18 0.86 16 27 N -0.44 -6.13 9.51 -9.54 -0.09 -6.22 16 28 C -0.16 -2.25 5.36 -90.62 -0.49 -2.74 16 29 C -0.17 -2.15 10.18 -26.69 -0.27 -2.42 16 30 C -0.19 -2.48 9.74 -26.69 -0.26 -2.74 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.36 8.74 5.20 -40.82 -0.21 8.53 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.41 6.83 7.92 -40.82 -0.32 6.50 16 36 H 0.15 1.62 7.63 -52.49 -0.40 1.22 16 37 H 0.14 0.86 7.16 -52.48 -0.38 0.48 16 38 H 0.19 0.96 7.41 -52.48 -0.39 0.57 16 39 H 0.19 0.54 7.30 -52.49 -0.38 0.16 16 40 H 0.16 1.23 7.03 -52.49 -0.37 0.86 16 41 H 0.11 1.38 8.11 -51.93 -0.42 0.95 16 42 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.12 1.77 5.02 -51.93 -0.26 1.51 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -36.10 379.24 -9.73 -45.83 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.85 Total: 13.44 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -4.69 Total: -4.03 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: 0.74 Total: -69.49 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.10 -9.73 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.375 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds