Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48497 * 109.47214 * 269.99706 * 3 2 1 5 5 H 1.48497 * 109.47489 * 29.99849 * 3 2 1 6 6 H 1.48506 * 109.47121 * 149.99845 * 3 2 1 7 7 C 1.38815 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99541 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00141 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99753 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46831 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47274 * 64.99906 * 11 10 9 13 13 N 1.46504 * 109.46949 * 304.99791 * 11 10 9 14 14 C 1.34777 * 119.99858 * 155.00496 * 13 11 10 15 15 O 1.21553 * 119.99924 * 359.97438 * 14 13 11 16 16 C 1.47940 * 119.99993 * 180.27088 * 14 13 11 17 17 C 1.39501 * 119.59076 * 179.72074 * 16 14 13 18 18 C 1.38229 * 119.18129 * 180.02562 * 17 16 14 19 19 C 1.39785 * 118.39397 * 0.02562 * 18 17 16 20 20 C 1.48264 * 120.44212 * 180.02562 * 19 18 17 21 21 C 1.40948 * 126.24891 * 359.67954 * 20 19 18 22 22 N 1.30635 * 108.07366 * 179.82364 * 21 20 19 23 23 N 1.39993 * 108.56270 * 0.44354 * 22 21 20 24 24 H 0.97007 * 125.87105 * 179.73747 * 23 22 21 25 25 C 1.34718 * 108.26542 * 359.71686 * 23 22 21 26 26 C 1.39747 * 119.12224 * 359.97438 * 19 18 17 27 27 N 1.31307 * 120.72597 * 359.72187 * 26 19 18 28 28 C 1.52997 * 109.46984 * 184.99740 * 11 10 9 29 29 C 1.53000 * 117.49911 * 248.74711 * 28 11 10 30 30 C 1.53001 * 117.49991 * 180.08338 * 28 11 10 31 31 H 0.97004 * 119.99953 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00110 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47397 * 59.99720 * 10 9 7 34 34 H 1.09000 * 109.46612 * 299.99208 * 10 9 7 35 35 H 0.97001 * 120.00416 * 334.99597 * 13 11 10 36 36 H 1.07992 * 120.41203 * 359.97438 * 17 16 14 37 37 H 1.08003 * 120.80370 * 179.97438 * 18 17 16 38 38 H 1.08004 * 125.96155 * 0.02562 * 21 20 19 39 39 H 1.08000 * 126.20285 * 180.02562 * 25 23 22 40 40 H 1.07992 * 119.64078 * 179.97438 * 26 19 18 41 41 H 1.08998 * 115.54987 * 34.41696 * 28 11 10 42 42 H 1.08997 * 117.50065 * 359.97438 * 29 28 11 43 43 H 1.08998 * 117.49818 * 145.02524 * 29 28 11 44 44 H 1.08996 * 117.50037 * 214.97866 * 30 28 11 45 45 H 1.08995 * 117.49751 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0011 12 1 5.8942 -1.6979 0.9324 13 7 5.9516 -1.3232 -1.1304 14 6 7.0496 -0.5433 -1.0792 15 8 7.7613 -0.5598 -0.0939 16 6 7.3849 0.3378 -2.2193 17 6 8.5202 1.1459 -2.1547 18 6 8.8252 1.9663 -3.2246 19 6 7.9770 1.9529 -4.3355 20 6 8.2614 2.8143 -5.5083 21 6 9.3460 3.7039 -5.6454 22 7 9.2547 4.2769 -6.8159 23 7 8.1134 3.7888 -7.4632 24 1 7.8053 4.0490 -8.3455 25 6 7.5167 2.8952 -6.6505 26 6 6.8578 1.1161 -4.3267 27 7 6.6040 0.3461 -3.2937 28 6 6.3803 -3.5109 -0.1246 29 6 7.1793 -3.9832 1.0917 30 6 7.9087 -3.4436 -0.1412 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3621 0.0007 33 1 3.8491 -3.0424 -0.8891 34 1 3.8484 -3.0426 0.8909 35 1 5.3835 -1.3098 -1.9166 36 1 9.1525 1.1314 -1.2794 37 1 9.6974 2.6029 -3.2023 38 1 10.1196 3.8787 -4.9123 39 1 6.6136 2.3427 -6.8638 40 1 6.1966 1.0994 -5.1803 41 1 5.9034 -4.2734 -0.7405 42 1 7.1611 -3.3536 1.9813 43 1 7.2285 -5.0564 1.2757 44 1 8.4374 -4.1620 -0.7677 45 1 8.3699 -2.4591 -0.0631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754444993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 92.769288 kcal Electronic energy + Delta-G solvation = -28621.848691 eV Core-core repulsion = 24641.251876 eV Total energy + Delta-G solvation = -3980.596815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30778 -41.54752 -40.29825 -38.37220 -36.75219 -35.14355 -34.37012 -33.26945 -32.99891 -32.38028 -30.51625 -29.46595 -26.08172 -25.27015 -24.93261 -23.26548 -23.00668 -22.59415 -22.26854 -21.35450 -21.22202 -19.94082 -19.20857 -18.85430 -17.77857 -16.94712 -16.68286 -16.53191 -16.28764 -16.16579 -15.94779 -15.74546 -15.45257 -15.27977 -15.00194 -14.79453 -14.68908 -14.34366 -14.22571 -13.90171 -13.74028 -13.53530 -13.04845 -12.92187 -12.71749 -12.57189 -12.29043 -12.13817 -11.91433 -11.85101 -11.44344 -11.37123 -11.16049 -11.04122 -10.98791 -10.74671 -10.59917 -10.48223 -10.00445 -9.32767 -8.98703 -8.04412 -5.36876 -0.53037 0.30075 0.91225 1.33942 1.34542 1.41343 1.47134 1.94437 2.05616 2.07290 2.44165 2.94704 3.00296 3.20885 3.27857 3.43112 3.53294 3.75592 3.84495 3.85955 3.93668 4.04706 4.06902 4.15837 4.22467 4.26493 4.30266 4.41925 4.54362 4.61217 4.76519 4.81728 4.84170 4.88962 5.03656 5.05321 5.09947 5.22176 5.30406 5.35931 5.46039 5.52960 5.63428 5.74997 6.19398 6.31166 6.45175 6.59362 6.83864 7.04861 7.17634 7.80535 7.98834 9.17022 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.003361 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.093087 B = 8328.920853 C =10678.051172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.054 4.054 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.228 4.228 8 H 0.066 0.934 9 N -0.757 5.757 10 C 0.153 3.847 11 C 0.173 3.827 12 H 0.070 0.930 13 N -0.693 5.693 14 C 0.568 3.432 15 O -0.563 6.563 16 C 0.035 3.965 17 C -0.102 4.102 18 C -0.085 4.085 19 C -0.007 4.007 20 C -0.231 4.231 21 C 0.071 3.929 22 N -0.327 5.327 23 N -0.463 5.463 24 H 0.456 0.544 25 C 0.104 3.896 26 C 0.086 3.914 27 N -0.468 5.468 28 C -0.168 4.168 29 C -0.160 4.160 30 C -0.182 4.182 31 H 0.258 0.742 32 H 0.362 0.638 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.208 0.792 39 H 0.218 0.782 40 H 0.186 0.814 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.101 0.899 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.774 3.061 -14.960 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.246 4.246 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.359 4.359 8 H 0.084 0.916 9 N -0.403 5.403 10 C 0.027 3.973 11 C 0.068 3.932 12 H 0.088 0.912 13 N -0.342 5.342 14 C 0.354 3.646 15 O -0.442 6.442 16 C -0.102 4.102 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.011 4.011 20 C -0.243 4.243 21 C -0.116 4.116 22 N -0.149 5.149 23 N -0.170 5.170 24 H 0.304 0.696 25 C -0.047 4.047 26 C -0.076 4.076 27 N -0.178 5.178 28 C -0.187 4.187 29 C -0.198 4.198 30 C -0.219 4.219 31 H 0.067 0.933 32 H 0.195 0.805 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.250 0.750 36 H 0.168 0.832 37 H 0.191 0.809 38 H 0.224 0.776 39 H 0.235 0.765 40 H 0.203 0.797 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 22.854 3.213 -15.051 27.553 hybrid contribution -0.248 1.122 0.052 1.151 sum 22.606 4.336 -14.999 27.474 Atomic orbital electron populations 1.69847 1.06724 1.26509 1.59846 1.25315 0.95920 1.00465 1.02930 0.85562 0.78049 0.80915 0.78110 1.20152 1.22023 1.19635 1.19049 0.82322 0.93689 1.40815 0.91575 1.42706 1.02688 1.03867 1.90992 1.21041 0.88187 0.87921 1.00185 1.20713 0.93720 0.89516 0.89219 0.91187 1.45896 1.26121 1.41471 1.20731 1.18177 0.80845 0.79460 0.86080 1.90671 1.51625 1.68439 1.33512 1.20978 0.95533 0.99915 0.93762 1.22111 0.95804 0.94109 1.00275 1.21824 1.00267 0.97891 0.91116 1.19369 0.94470 0.94205 0.93028 1.18792 1.01558 1.07374 0.96558 1.24434 0.98572 0.93698 0.94911 1.77239 1.04707 1.23614 1.09294 1.46336 1.19755 1.32803 1.18087 0.69649 1.23308 0.98893 0.92496 0.90030 1.23248 0.95975 0.91909 0.96484 1.67434 1.29122 1.20912 1.00367 1.22536 0.93937 0.97912 1.04349 1.22997 1.02872 1.01995 0.91896 1.23199 0.93420 1.03568 1.01693 0.93286 0.80472 0.93767 0.93474 0.74972 0.83178 0.80936 0.77573 0.76529 0.79670 0.86267 0.89552 0.86677 0.88019 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.75 13.97 21.65 0.30 -62.45 16 2 C -0.05 -3.24 5.50 84.86 0.47 -2.77 16 3 Si 0.95 47.40 27.74 68.60 1.90 49.31 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 6 H -0.27 -13.08 6.52 99.48 0.65 -12.43 16 7 C -0.23 -13.03 10.47 84.04 0.88 -12.15 16 8 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 9 N -0.76 -36.01 5.24 -343.44 -1.80 -37.81 16 10 C 0.15 5.79 5.80 86.38 0.50 6.29 16 11 C 0.17 5.68 2.43 44.99 0.11 5.79 16 12 H 0.07 2.58 7.33 -2.39 -0.02 2.56 16 13 N -0.69 -22.73 4.49 -445.30 -2.00 -24.73 16 14 C 0.57 18.73 7.13 86.81 0.62 19.35 16 15 O -0.56 -20.29 13.33 -3.88 -0.05 -20.34 16 16 C 0.03 0.99 6.75 41.87 0.28 1.27 16 17 C -0.10 -2.31 9.61 22.57 0.22 -2.09 16 18 C -0.09 -1.40 9.68 22.64 0.22 -1.19 16 19 C -0.01 -0.12 5.90 -19.87 -0.12 -0.23 16 20 C -0.23 -3.03 6.05 -20.33 -0.12 -3.15 16 21 C 0.07 0.93 11.45 85.53 0.98 1.91 16 22 N -0.33 -5.00 12.66 -56.41 -0.71 -5.72 16 23 N -0.46 -4.37 7.32 -56.95 -0.42 -4.79 16 24 H 0.46 1.45 8.96 -213.38 -1.91 -0.47 16 25 C 0.10 0.91 11.40 83.87 0.96 1.86 16 26 C 0.09 1.67 10.73 85.14 0.91 2.58 16 27 N -0.47 -12.53 9.51 -184.11 -1.75 -14.29 16 28 C -0.17 -4.48 5.36 -10.79 -0.06 -4.54 16 29 C -0.16 -3.82 10.18 30.62 0.31 -3.51 16 30 C -0.18 -4.66 9.74 30.62 0.30 -4.36 16 31 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 32 H 0.36 17.33 5.20 -92.71 -0.48 16.85 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.41 13.64 7.92 -92.71 -0.73 12.91 16 36 H 0.15 3.23 7.63 -2.91 -0.02 3.21 16 37 H 0.17 1.58 7.16 -2.91 -0.02 1.56 16 38 H 0.21 1.54 7.41 -2.91 -0.02 1.51 16 39 H 0.22 0.31 7.30 -2.91 -0.02 0.29 16 40 H 0.19 2.32 7.03 -2.91 -0.02 2.30 16 41 H 0.12 2.88 8.11 -2.39 -0.02 2.86 16 42 H 0.09 2.22 8.05 -2.39 -0.02 2.20 16 43 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.10 2.93 5.02 -2.39 -0.01 2.92 16 Total: -1.00 -79.22 379.24 -0.18 -79.40 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -2.11 Total: 36.34 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.46 Total: 5.07 kcal Atomic # 7 Polarization: -143.40 SS G_CDS: -6.38 Total: -149.78 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.31 kcal Total: -79.22 -0.18 -79.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.170 kcal (2) G-P(sol) polarization free energy of solvation -79.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds