Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99650 * 2 1 4 4 H 1.48505 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47579 * 300.00191 * 3 2 1 6 6 H 1.48498 * 109.47231 * 60.00443 * 3 2 1 7 7 C 1.38806 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00040 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47136 * 294.99932 * 11 10 9 13 13 N 1.46501 * 109.46808 * 55.00171 * 11 10 9 14 14 C 1.34776 * 119.99767 * 204.99986 * 13 11 10 15 15 O 1.21550 * 119.99936 * 0.02562 * 14 13 11 16 16 C 1.47933 * 120.00162 * 179.97438 * 14 13 11 17 17 C 1.39505 * 119.59814 * 179.97438 * 16 14 13 18 18 C 1.38222 * 119.18970 * 180.02562 * 17 16 14 19 19 C 1.39795 * 118.38877 * 0.02562 * 18 17 16 20 20 C 1.48259 * 120.43605 * 180.02562 * 19 18 17 21 21 C 1.40951 * 126.25338 * 359.69028 * 20 19 18 22 22 N 1.30626 * 108.07313 * 179.81726 * 21 20 19 23 23 N 1.40004 * 108.56749 * 0.44422 * 22 21 20 24 24 H 0.96996 * 125.86432 * 179.73950 * 23 22 21 25 25 C 1.34714 * 108.25792 * 359.71275 * 23 22 21 26 26 C 1.39736 * 119.12079 * 0.02562 * 19 18 17 27 27 N 1.31308 * 120.73609 * 0.02562 * 26 19 18 28 28 C 1.53002 * 109.46973 * 175.00036 * 11 10 9 29 29 C 1.52997 * 117.49460 * 248.74894 * 28 11 10 30 30 C 1.53002 * 117.49474 * 180.08986 * 28 11 10 31 31 H 0.97000 * 120.00419 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00545 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47143 * 59.99298 * 10 9 7 34 34 H 1.09002 * 109.47101 * 299.99722 * 10 9 7 35 35 H 0.96994 * 120.00366 * 24.99264 * 13 11 10 36 36 H 1.07997 * 120.40115 * 0.02562 * 17 16 14 37 37 H 1.07996 * 120.80416 * 180.27502 * 18 17 16 38 38 H 1.08000 * 125.95850 * 359.96169 * 21 20 19 39 39 H 1.07995 * 126.19666 * 180.02562 * 25 23 22 40 40 H 1.08009 * 119.63635 * 179.97438 * 26 19 18 41 41 H 1.09001 * 115.54840 * 34.41545 * 28 11 10 42 42 H 1.09000 * 117.50416 * 359.97438 * 29 28 11 43 43 H 1.09000 * 117.50044 * 145.02253 * 29 28 11 44 44 H 1.08997 * 117.49367 * 214.97977 * 30 28 11 45 45 H 1.08996 * 117.49736 * 359.97033 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.4981 -4.8143 0.9284 13 7 0.1441 -4.6753 -1.1342 14 6 -1.0804 -5.2362 -1.0827 15 8 -1.4216 -5.8615 -0.0978 16 6 -2.0095 -5.0900 -2.2245 17 6 -3.2747 -5.6745 -2.1626 18 6 -4.1359 -5.5330 -3.2344 19 6 -3.7003 -4.8048 -4.3454 20 6 -4.5870 -4.6242 -5.5198 21 6 -5.8935 -5.1332 -5.6638 22 7 -6.3475 -4.7598 -6.8304 23 7 -5.3552 -4.0131 -7.4768 24 1 -5.4265 -3.6168 -8.3593 25 6 -4.2847 -3.9392 -6.6623 26 6 -2.4180 -4.2495 -4.3344 27 7 -1.6277 -4.4063 -3.2975 28 6 1.8248 -6.1411 -0.1300 29 6 1.6663 -6.9250 -1.4343 30 6 1.0019 -7.4308 -0.1513 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0016 33 1 2.6849 -3.7152 0.8872 34 1 2.6848 -3.7137 -0.8928 35 1 0.4161 -4.1760 -1.9199 36 1 -3.5775 -6.2307 -1.2878 37 1 -5.1228 -5.9708 -3.2125 38 1 -6.4269 -5.7261 -4.9357 39 1 -3.3561 -3.4302 -6.8741 40 1 -2.0728 -3.6857 -5.1885 41 1 2.7974 -6.1725 0.3611 42 1 1.0196 -6.4997 -2.2018 43 1 2.5344 -7.4726 -1.8011 44 1 1.4333 -8.3109 0.3255 45 1 -0.0814 -7.3379 -0.0744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754444994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 119.243248 kcal Electronic energy + Delta-G solvation = -28656.487782 eV Core-core repulsion = 24677.038964 eV Total energy + Delta-G solvation = -3979.448818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65669 -40.48279 -39.23074 -36.97003 -34.84244 -33.77314 -33.03963 -32.07265 -31.76204 -31.07450 -29.23794 -27.95130 -24.69120 -24.10001 -23.89682 -22.17501 -21.90430 -21.49590 -21.27598 -20.47676 -19.54496 -18.56591 -17.95086 -17.07827 -16.51025 -15.92401 -15.45778 -15.42629 -15.18534 -15.12595 -14.77720 -14.42779 -14.41031 -13.90701 -13.62746 -13.47781 -13.18009 -13.13871 -13.03009 -12.75992 -12.22051 -11.99871 -11.58536 -11.30277 -11.27516 -11.15773 -10.85580 -10.81156 -10.52615 -10.21977 -10.12579 -10.08117 -9.91117 -9.74362 -9.66671 -9.51436 -9.40588 -8.87892 -8.59029 -8.20992 -6.90966 -5.73400 -3.03008 0.42315 1.21223 1.52520 2.34753 2.42593 3.10328 3.41195 3.44888 3.50123 3.52429 4.00825 4.10695 4.14136 4.28980 4.40943 4.59620 4.67745 4.71864 4.88173 4.97251 4.99208 5.09031 5.23931 5.24680 5.26882 5.51934 5.58925 5.62787 5.66803 5.80514 5.91058 5.94942 6.02829 6.07093 6.08837 6.13056 6.30059 6.39181 6.51845 6.54646 6.56966 6.74803 6.76140 6.98850 7.16926 7.68909 7.72436 8.01578 8.43875 8.53861 9.55853 10.12336 10.47759 11.48858 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008630 B = 0.003155 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.700658 B = 8873.485531 C =11348.662703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.166 3.834 12 H 0.092 0.908 13 N -0.685 5.685 14 C 0.571 3.429 15 O -0.540 6.540 16 C 0.074 3.926 17 C -0.102 4.102 18 C -0.087 4.087 19 C -0.027 4.027 20 C -0.202 4.202 21 C 0.072 3.928 22 N -0.294 5.294 23 N -0.471 5.471 24 H 0.443 0.557 25 C 0.084 3.916 26 C 0.098 3.902 27 N -0.441 5.441 28 C -0.159 4.159 29 C -0.178 4.178 30 C -0.187 4.187 31 H 0.254 0.746 32 H 0.386 0.614 33 H 0.035 0.965 34 H 0.027 0.973 35 H 0.415 0.585 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.188 0.812 39 H 0.185 0.815 40 H 0.158 0.842 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 -14.066 -13.796 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.061 3.939 12 H 0.110 0.890 13 N -0.335 5.335 14 C 0.357 3.643 15 O -0.418 6.418 16 C -0.064 4.064 17 C -0.123 4.123 18 C -0.112 4.112 19 C -0.031 4.031 20 C -0.214 4.214 21 C -0.116 4.116 22 N -0.115 5.115 23 N -0.177 5.177 24 H 0.287 0.713 25 C -0.065 4.065 26 C -0.063 4.063 27 N -0.151 5.151 28 C -0.179 4.179 29 C -0.215 4.215 30 C -0.224 4.224 31 H 0.064 0.936 32 H 0.220 0.780 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.253 0.747 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.205 0.795 39 H 0.202 0.798 40 H 0.175 0.825 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.455 -14.051 -13.861 21.472 hybrid contribution 0.162 1.215 -0.291 1.260 sum -8.293 -12.836 -14.152 20.828 Atomic orbital electron populations 1.69689 1.05068 1.25428 1.57603 1.24743 0.95487 0.97646 1.03002 0.86129 0.78774 0.84221 0.77112 1.20575 1.21958 1.21942 1.19245 0.91021 0.84038 1.42735 0.91098 1.42351 1.06029 0.99704 1.89492 1.20912 0.93021 0.85083 0.98976 1.20824 0.90235 0.92977 0.89878 0.88977 1.45835 1.13732 1.52968 1.20996 1.17782 0.81685 0.79294 0.85587 1.90698 1.76320 1.42339 1.32442 1.21193 0.94064 0.97513 0.93640 1.22010 0.92925 0.98033 0.99308 1.21453 0.99974 0.97698 0.92118 1.19214 0.94026 0.97066 0.92802 1.18781 0.96357 1.10149 0.96116 1.24037 0.93827 0.98845 0.94885 1.77253 1.12493 1.12960 1.08812 1.46238 1.10909 1.43089 1.17464 0.71262 1.22753 0.93547 0.99207 0.90974 1.22718 0.89483 0.97688 0.96412 1.67523 1.35838 1.12089 0.99664 1.22689 1.00772 0.92405 1.02045 1.22903 1.02960 1.03970 0.91682 1.23335 1.01519 0.96743 1.00816 0.93638 0.77966 0.94764 0.95539 0.74735 0.83368 0.84279 0.79504 0.79766 0.82494 0.87205 0.88930 0.89544 0.89756 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.43 5.43 -59.90 -0.33 -18.75 16 10 C 0.15 2.95 5.80 -4.04 -0.02 2.93 16 11 C 0.17 2.89 2.59 -67.93 -0.18 2.72 16 12 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 13 N -0.69 -11.82 3.04 -54.72 -0.17 -11.99 16 14 C 0.57 9.87 6.64 -12.29 -0.08 9.79 16 15 O -0.54 -10.13 13.34 5.32 0.07 -10.06 16 16 C 0.07 1.13 6.75 -82.99 -0.56 0.57 16 17 C -0.10 -1.29 9.61 -39.12 -0.38 -1.66 16 18 C -0.09 -0.87 9.68 -39.01 -0.38 -1.25 16 19 C -0.03 -0.28 5.90 -104.64 -0.62 -0.90 16 20 C -0.20 -1.75 6.05 -105.34 -0.64 -2.39 16 21 C 0.07 0.60 11.45 -17.04 -0.20 0.41 16 22 N -0.29 -2.73 12.66 30.82 0.39 -2.34 16 23 N -0.47 -3.12 7.32 30.65 0.22 -2.89 16 24 H 0.44 1.49 8.96 -182.67 -1.64 -0.15 16 25 C 0.08 0.56 11.40 -16.88 -0.19 0.37 16 26 C 0.10 1.13 10.73 -17.22 -0.18 0.95 16 27 N -0.44 -6.47 9.51 -9.54 -0.09 -6.56 16 28 C -0.16 -2.33 5.71 -90.62 -0.52 -2.85 16 29 C -0.18 -2.41 9.74 -26.69 -0.26 -2.67 16 30 C -0.19 -2.65 9.83 -26.69 -0.26 -2.91 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 10.47 7.33 -40.82 -0.30 10.18 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.42 7.35 7.92 -40.82 -0.32 7.03 16 36 H 0.15 1.76 7.63 -52.49 -0.40 1.36 16 37 H 0.14 0.96 7.16 -52.49 -0.38 0.58 16 38 H 0.19 1.07 7.41 -52.49 -0.39 0.68 16 39 H 0.19 0.64 7.30 -52.49 -0.38 0.26 16 40 H 0.16 1.34 7.03 -52.48 -0.37 0.97 16 41 H 0.11 1.47 8.11 -51.93 -0.42 1.05 16 42 H 0.09 1.33 6.67 -51.93 -0.35 0.99 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.12 1.87 5.01 -51.93 -0.26 1.61 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -35.07 379.44 -10.02 -45.09 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -6.84 Total: 16.12 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -4.71 Total: -4.18 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: 0.76 Total: -70.10 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.07 -10.02 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.332 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds