Wall clock time and date at job start Sat Apr 11 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99650 * 2 1 4 4 H 1.48505 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47579 * 300.00191 * 3 2 1 6 6 H 1.48498 * 109.47231 * 60.00443 * 3 2 1 7 7 C 1.38806 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00040 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47136 * 294.99932 * 11 10 9 13 13 N 1.46501 * 109.46808 * 55.00171 * 11 10 9 14 14 C 1.34776 * 119.99767 * 204.99986 * 13 11 10 15 15 O 1.21550 * 119.99936 * 0.02562 * 14 13 11 16 16 C 1.47933 * 120.00162 * 179.97438 * 14 13 11 17 17 C 1.39505 * 119.59814 * 179.97438 * 16 14 13 18 18 C 1.38222 * 119.18970 * 180.02562 * 17 16 14 19 19 C 1.39795 * 118.38877 * 0.02562 * 18 17 16 20 20 C 1.48259 * 120.43605 * 180.02562 * 19 18 17 21 21 C 1.40951 * 126.25338 * 359.69028 * 20 19 18 22 22 N 1.30626 * 108.07313 * 179.81726 * 21 20 19 23 23 N 1.40004 * 108.56749 * 0.44422 * 22 21 20 24 24 H 0.96996 * 125.86432 * 179.73950 * 23 22 21 25 25 C 1.34714 * 108.25792 * 359.71275 * 23 22 21 26 26 C 1.39736 * 119.12079 * 0.02562 * 19 18 17 27 27 N 1.31308 * 120.73609 * 0.02562 * 26 19 18 28 28 C 1.53002 * 109.46973 * 175.00036 * 11 10 9 29 29 C 1.52997 * 117.49460 * 248.74894 * 28 11 10 30 30 C 1.53002 * 117.49474 * 180.08986 * 28 11 10 31 31 H 0.97000 * 120.00419 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00545 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47143 * 59.99298 * 10 9 7 34 34 H 1.09002 * 109.47101 * 299.99722 * 10 9 7 35 35 H 0.96994 * 120.00366 * 24.99264 * 13 11 10 36 36 H 1.07997 * 120.40115 * 0.02562 * 17 16 14 37 37 H 1.07996 * 120.80416 * 180.27502 * 18 17 16 38 38 H 1.08000 * 125.95850 * 359.96169 * 21 20 19 39 39 H 1.07995 * 126.19666 * 180.02562 * 25 23 22 40 40 H 1.08009 * 119.63635 * 179.97438 * 26 19 18 41 41 H 1.09001 * 115.54840 * 34.41545 * 28 11 10 42 42 H 1.09000 * 117.50416 * 359.97438 * 29 28 11 43 43 H 1.09000 * 117.50044 * 145.02253 * 29 28 11 44 44 H 1.08997 * 117.49367 * 214.97977 * 30 28 11 45 45 H 1.08996 * 117.49736 * 359.97033 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.4981 -4.8143 0.9284 13 7 0.1441 -4.6753 -1.1342 14 6 -1.0804 -5.2362 -1.0827 15 8 -1.4216 -5.8615 -0.0978 16 6 -2.0095 -5.0900 -2.2245 17 6 -3.2747 -5.6745 -2.1626 18 6 -4.1359 -5.5330 -3.2344 19 6 -3.7003 -4.8048 -4.3454 20 6 -4.5870 -4.6242 -5.5198 21 6 -5.8935 -5.1332 -5.6638 22 7 -6.3475 -4.7598 -6.8304 23 7 -5.3552 -4.0131 -7.4768 24 1 -5.4265 -3.6168 -8.3593 25 6 -4.2847 -3.9392 -6.6623 26 6 -2.4180 -4.2495 -4.3344 27 7 -1.6277 -4.4063 -3.2975 28 6 1.8248 -6.1411 -0.1300 29 6 1.6663 -6.9250 -1.4343 30 6 1.0019 -7.4308 -0.1513 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0016 33 1 2.6849 -3.7152 0.8872 34 1 2.6848 -3.7137 -0.8928 35 1 0.4161 -4.1760 -1.9199 36 1 -3.5775 -6.2307 -1.2878 37 1 -5.1228 -5.9708 -3.2125 38 1 -6.4269 -5.7261 -4.9357 39 1 -3.3561 -3.4302 -6.8741 40 1 -2.0728 -3.6857 -5.1885 41 1 2.7974 -6.1725 0.3611 42 1 1.0196 -6.4997 -2.2018 43 1 2.5344 -7.4726 -1.8011 44 1 1.4333 -8.3109 0.3255 45 1 -0.0814 -7.3379 -0.0744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754444994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:37 Heat of formation + Delta-G solvation = 95.125959 kcal Electronic energy + Delta-G solvation = -28657.533586 eV Core-core repulsion = 24677.038964 eV Total energy + Delta-G solvation = -3980.494622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.28889 -41.58917 -40.33152 -38.27109 -36.53143 -34.95839 -34.28878 -32.97771 -32.94675 -32.35036 -30.32051 -29.33898 -26.11584 -25.39316 -24.91196 -23.45528 -22.97951 -22.57596 -22.33103 -21.25328 -20.85456 -19.44566 -19.16374 -18.78115 -17.60376 -17.26086 -16.78515 -16.49036 -16.22963 -16.03693 -15.78486 -15.57583 -15.32965 -15.25144 -15.08837 -14.73319 -14.63043 -14.26654 -14.13858 -13.79631 -13.56796 -13.12049 -13.03172 -12.83960 -12.70965 -12.65106 -12.29991 -12.02897 -11.89861 -11.81962 -11.40815 -11.34896 -11.08849 -10.97319 -10.78705 -10.72590 -10.57138 -10.44655 -9.94371 -8.99175 -8.95849 -7.91551 -5.21555 -0.49400 0.33597 0.93068 1.48945 1.49833 1.50497 1.60052 1.96229 2.07878 2.18651 2.57406 2.96483 3.02422 3.20034 3.42575 3.54844 3.65371 3.78382 3.88000 3.95245 4.02183 4.09055 4.10317 4.20046 4.27787 4.30270 4.43554 4.51976 4.56189 4.64507 4.78991 4.84119 4.84869 4.90299 5.05550 5.09387 5.16639 5.24683 5.28154 5.40958 5.47899 5.52125 5.58635 5.66693 6.28241 6.33090 6.49605 6.61099 6.88140 7.22390 7.35360 8.08595 8.32914 9.31713 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008630 B = 0.003155 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.700658 B = 8873.485531 C =11348.662703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.174 3.826 12 H 0.065 0.935 13 N -0.686 5.686 14 C 0.567 3.433 15 O -0.565 6.565 16 C 0.037 3.963 17 C -0.104 4.104 18 C -0.086 4.086 19 C -0.008 4.008 20 C -0.230 4.230 21 C 0.071 3.929 22 N -0.327 5.327 23 N -0.463 5.463 24 H 0.456 0.544 25 C 0.104 3.896 26 C 0.086 3.914 27 N -0.466 5.466 28 C -0.165 4.165 29 C -0.165 4.165 30 C -0.186 4.186 31 H 0.249 0.751 32 H 0.373 0.627 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.412 0.588 36 H 0.149 0.851 37 H 0.173 0.827 38 H 0.207 0.793 39 H 0.218 0.782 40 H 0.186 0.814 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -14.423 -15.714 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.069 3.931 12 H 0.083 0.917 13 N -0.335 5.335 14 C 0.354 3.646 15 O -0.445 6.445 16 C -0.100 4.100 17 C -0.125 4.125 18 C -0.111 4.111 19 C -0.011 4.011 20 C -0.242 4.242 21 C -0.116 4.116 22 N -0.148 5.148 23 N -0.170 5.170 24 H 0.304 0.696 25 C -0.047 4.047 26 C -0.076 4.076 27 N -0.176 5.176 28 C -0.184 4.184 29 C -0.202 4.202 30 C -0.223 4.223 31 H 0.058 0.942 32 H 0.205 0.795 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.249 0.751 36 H 0.166 0.834 37 H 0.191 0.809 38 H 0.224 0.776 39 H 0.234 0.766 40 H 0.203 0.797 41 H 0.147 0.853 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.864 -14.441 -15.799 22.803 hybrid contribution -0.086 1.297 0.168 1.311 sum -7.950 -13.144 -15.630 21.915 Atomic orbital electron populations 1.69863 1.06711 1.25786 1.59578 1.25574 0.96313 1.01121 1.03761 0.85055 0.78312 0.79785 0.76463 1.18824 1.22055 1.22456 1.19669 0.91583 0.85045 1.40950 0.90214 1.42530 1.05607 1.00991 1.89445 1.21037 0.93333 0.83827 0.99429 1.20604 0.89686 0.93728 0.89050 0.91680 1.45793 1.14003 1.53134 1.20579 1.18182 0.81745 0.78596 0.86080 1.90665 1.76751 1.43459 1.33620 1.20972 0.94834 1.00379 0.93786 1.22101 0.92443 0.97751 1.00232 1.21811 1.00869 0.97327 0.91107 1.19359 0.93506 0.95187 0.93075 1.18789 0.96627 1.12299 0.96483 1.24424 0.93791 0.98439 0.94968 1.77228 1.13813 1.14268 1.09498 1.46320 1.10386 1.42273 1.17991 0.69640 1.23290 0.94189 0.97325 0.89914 1.23237 0.89931 0.98030 0.96388 1.67437 1.37192 1.12680 1.00308 1.22622 1.01219 0.90965 1.03620 1.22935 1.03283 1.03095 0.90872 1.23289 1.00303 0.97097 1.01590 0.94239 0.79525 0.94044 0.94429 0.75101 0.83373 0.80926 0.77599 0.76552 0.79737 0.85348 0.90099 0.87084 0.87577 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 7 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.74 -38.17 5.43 -343.44 -1.87 -40.03 16 10 C 0.15 6.02 5.80 86.38 0.50 6.52 16 11 C 0.17 6.25 2.59 44.99 0.12 6.37 16 12 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 13 N -0.69 -24.71 3.04 -445.31 -1.35 -26.06 16 14 C 0.57 20.71 6.64 86.81 0.58 21.28 16 15 O -0.56 -22.51 13.34 -3.87 -0.05 -22.56 16 16 C 0.04 1.17 6.75 41.87 0.28 1.45 16 17 C -0.10 -2.69 9.61 22.57 0.22 -2.47 16 18 C -0.09 -1.63 9.68 22.64 0.22 -1.41 16 19 C -0.01 -0.14 5.90 -19.87 -0.12 -0.26 16 20 C -0.23 -3.44 6.05 -20.33 -0.12 -3.56 16 21 C 0.07 1.04 11.45 85.54 0.98 2.02 16 22 N -0.33 -5.41 12.66 -56.41 -0.71 -6.13 16 23 N -0.46 -4.94 7.32 -56.95 -0.42 -5.35 16 24 H 0.46 1.92 8.96 -213.39 -1.91 0.01 16 25 C 0.10 1.07 11.40 83.87 0.96 2.02 16 26 C 0.09 1.90 10.73 85.13 0.91 2.81 16 27 N -0.47 -13.89 9.51 -184.11 -1.75 -15.65 16 28 C -0.16 -4.72 5.71 -10.79 -0.06 -4.78 16 29 C -0.16 -4.27 9.74 30.62 0.30 -3.97 16 30 C -0.19 -5.16 9.83 30.62 0.30 -4.86 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.37 21.00 7.33 -92.71 -0.68 20.32 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 15.22 7.92 -92.71 -0.73 14.49 16 36 H 0.15 3.67 7.63 -2.91 -0.02 3.65 16 37 H 0.17 1.98 7.16 -2.91 -0.02 1.96 16 38 H 0.21 1.87 7.41 -2.91 -0.02 1.85 16 39 H 0.22 0.65 7.30 -2.91 -0.02 0.63 16 40 H 0.19 2.75 7.03 -2.91 -0.02 2.73 16 41 H 0.13 3.20 8.11 -2.39 -0.02 3.18 16 42 H 0.08 2.32 6.67 -2.39 -0.02 2.30 16 43 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.09 3.09 5.01 -2.39 -0.01 3.08 16 Total: -1.00 -77.62 379.44 0.27 -77.35 By element: Atomic # 1 Polarization: 47.65 SS G_CDS: -2.25 Total: 45.40 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.37 Total: 4.66 kcal Atomic # 7 Polarization: -147.40 SS G_CDS: -5.82 Total: -153.22 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -77.62 0.27 -77.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754444994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.474 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds