Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00134 * 2 1 4 4 H 1.48496 * 109.46639 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47185 * 119.99808 * 3 2 1 6 6 H 1.48494 * 109.47049 * 240.00297 * 3 2 1 7 7 C 1.37884 * 119.99820 * 180.27325 * 2 1 3 8 8 H 1.08004 * 119.99862 * 179.72274 * 7 2 1 9 9 C 1.50691 * 120.00288 * 359.72901 * 7 2 1 10 10 N 1.46499 * 109.47530 * 179.97438 * 9 7 2 11 11 C 1.34972 * 125.97802 * 124.70655 * 10 9 7 12 12 C 1.35244 * 107.85697 * 179.90326 * 11 10 9 13 13 C 1.40402 * 107.86854 * 0.36522 * 12 11 10 14 14 N 1.40190 * 125.97320 * 179.73478 * 13 12 11 15 15 C 1.34781 * 120.00001 * 0.02562 * 14 13 12 16 16 O 1.21595 * 119.99905 * 354.75113 * 15 14 13 17 17 N 1.34775 * 120.00131 * 174.74934 * 15 14 13 18 18 C 1.46506 * 119.99857 * 185.00653 * 17 15 14 19 19 C 1.50702 * 109.46800 * 85.87446 * 18 17 15 20 20 C 1.38648 * 120.79315 * 275.14913 * 19 18 17 21 21 C 1.38206 * 119.16414 * 179.80129 * 20 19 18 22 22 N 1.31871 * 120.76010 * 0.48826 * 21 20 19 23 23 C 1.31863 * 121.72766 * 359.74142 * 22 21 20 24 24 C 1.38200 * 120.76847 * 0.02562 * 23 22 21 25 25 C 1.46495 * 120.00093 * 5.00553 * 17 15 14 26 26 C 1.53002 * 117.50079 * 182.89541 * 25 17 15 27 27 C 1.53001 * 60.00282 * 252.51266 * 26 25 17 28 28 N 1.31212 * 108.05463 * 359.77975 * 13 12 11 29 29 H 0.97008 * 119.99585 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47098 * 299.99580 * 9 7 2 31 31 H 1.09002 * 109.47532 * 59.99563 * 9 7 2 32 32 H 1.08002 * 126.06466 * 0.02562 * 11 10 9 33 33 H 1.07992 * 126.06211 * 180.14322 * 12 11 10 34 34 H 0.96992 * 120.00370 * 180.02562 * 14 13 12 35 35 H 1.08998 * 109.46974 * 205.87129 * 18 17 15 36 36 H 1.09001 * 109.47324 * 325.87850 * 18 17 15 37 37 H 1.08004 * 120.41571 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.61807 * 180.20718 * 21 20 19 39 39 H 1.08003 * 119.61413 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.42116 * 179.97438 * 24 23 22 41 41 H 1.09000 * 115.55222 * 328.60884 * 25 17 15 42 42 H 1.09000 * 117.49469 * 0.02562 * 26 25 17 43 43 H 1.09001 * 117.49558 * 145.02333 * 26 25 17 44 44 H 1.08999 * 117.50035 * 252.50980 * 27 26 25 45 45 H 1.09002 * 117.51790 * 107.47524 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0102 9 6 1.2511 -2.4992 -0.0057 10 7 2.2030 -3.6127 -0.0129 11 6 2.2496 -4.6219 0.8821 12 6 3.2639 -5.4435 0.5284 13 6 3.8668 -4.9125 -0.6231 14 7 4.9607 -5.4608 -1.3073 15 6 5.5280 -6.6015 -0.8671 16 8 5.1540 -7.1036 0.1753 17 7 6.5097 -7.1856 -1.5823 18 6 7.0504 -8.4809 -1.1625 19 6 6.2006 -9.5879 -1.7313 20 6 5.0527 -10.0089 -1.0775 21 6 4.2961 -11.0242 -1.6314 22 7 4.6603 -11.5969 -2.7621 23 6 5.7480 -11.2255 -3.4085 24 6 6.5515 -10.2139 -2.9177 25 6 7.0361 -6.5252 -2.7793 26 6 8.1018 -7.2698 -3.5860 27 6 8.4911 -6.0533 -2.7437 28 7 3.2281 -3.8129 -0.9463 29 1 -0.4850 -0.8402 0.0004 30 1 0.6281 -2.5591 0.8867 31 1 0.6207 -2.5548 -0.8932 32 1 1.5921 -4.7513 1.7291 33 1 3.5600 -6.3458 1.0426 34 1 5.3094 -5.0194 -2.0974 35 1 8.0724 -8.5834 -1.5273 36 1 7.0452 -8.5414 -0.0742 37 1 4.7516 -9.5466 -0.1490 38 1 3.3987 -11.3556 -1.1301 39 1 6.0140 -11.7178 -4.3323 40 1 7.4413 -9.9145 -3.4516 41 1 6.3222 -5.9140 -3.3315 42 1 8.4110 -8.2512 -3.2262 43 1 8.0890 -7.1487 -4.6692 44 1 8.7345 -5.1319 -3.2728 45 1 9.0565 -6.2339 -1.8295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118894232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = 112.832285 kcal Electronic energy + Delta-G solvation = -28810.573052 eV Core-core repulsion = 24830.846234 eV Total energy + Delta-G solvation = -3979.726818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.41008 -41.58600 -40.71839 -38.65475 -36.55152 -35.65005 -35.11078 -33.46708 -32.38660 -32.11873 -31.02364 -28.62709 -27.72715 -25.16887 -24.51193 -23.93833 -23.56209 -23.18354 -22.43260 -21.85910 -20.32865 -19.45774 -19.21531 -18.30858 -17.82294 -17.35508 -17.13727 -16.74819 -16.54027 -16.29696 -16.07258 -15.81397 -15.60187 -15.44698 -14.99290 -14.76271 -14.54039 -14.33110 -14.01882 -13.86822 -13.72289 -13.54141 -13.25507 -13.22832 -12.62122 -12.57579 -12.20891 -12.03086 -12.00266 -11.95969 -11.77861 -11.59271 -11.08895 -11.01396 -10.70439 -10.69133 -10.48739 -10.07974 -9.87618 -9.66569 -9.13953 -8.77468 -6.56424 0.13636 0.21156 0.96467 1.08601 1.50283 1.56878 1.58418 1.78250 1.89845 2.27545 2.47754 2.66521 2.82517 2.93982 3.00620 3.56808 3.64064 3.70663 3.74069 3.83245 3.92555 4.01322 4.12029 4.16183 4.21611 4.28437 4.52702 4.55784 4.63728 4.69929 4.76042 4.80837 4.84104 4.84436 4.90783 5.00490 5.05743 5.08705 5.23442 5.31396 5.42782 5.52399 5.68510 5.78122 5.82933 5.93712 6.26472 6.40831 6.50949 7.00282 7.01622 7.19424 7.29093 8.57730 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002483 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.161552 B =11275.858723 C =12359.549013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.019 4.019 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.621 4.621 8 H 0.045 0.955 9 C 0.260 3.740 10 N -0.344 5.344 11 C 0.055 3.945 12 C -0.287 4.287 13 C 0.286 3.714 14 N -0.636 5.636 15 C 0.717 3.283 16 O -0.588 6.588 17 N -0.581 5.581 18 C 0.169 3.831 19 C -0.069 4.069 20 C -0.161 4.161 21 C 0.079 3.921 22 N -0.511 5.511 23 C 0.083 3.917 24 C -0.147 4.147 25 C 0.029 3.971 26 C -0.155 4.155 27 C -0.183 4.183 28 N -0.348 5.348 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.015 0.985 32 H 0.201 0.799 33 H 0.170 0.830 34 H 0.417 0.583 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.161 0.839 39 H 0.181 0.819 40 H 0.169 0.831 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.758 -20.736 -7.222 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.063 0.937 9 C 0.141 3.859 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.318 4.318 13 C 0.031 3.969 14 N -0.289 5.289 15 C 0.418 3.582 16 O -0.465 6.465 17 N -0.315 5.315 18 C 0.047 3.953 19 C -0.079 4.079 20 C -0.181 4.181 21 C -0.077 4.077 22 N -0.221 5.221 23 C -0.073 4.073 24 C -0.167 4.167 25 C -0.075 4.075 26 C -0.192 4.192 27 C -0.222 4.222 28 N -0.179 5.179 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.218 0.782 33 H 0.188 0.812 34 H 0.255 0.745 35 H 0.147 0.853 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.178 0.822 39 H 0.198 0.802 40 H 0.186 0.814 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.131 0.869 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.617 -19.110 -7.627 27.748 hybrid contribution 0.159 -1.300 0.683 1.477 sum 18.777 -20.410 -6.944 28.590 Atomic orbital electron populations 1.70949 1.07465 1.30166 1.47359 1.27290 0.96436 1.06085 0.92069 0.82886 0.74156 0.71100 0.77832 1.19971 1.19620 1.20008 1.22283 0.94666 0.92117 1.56831 0.93666 1.19405 0.86406 0.82819 0.97283 1.48548 1.24162 1.20213 1.19697 1.23169 1.00612 0.88850 0.96679 1.21679 1.02016 1.06538 1.01591 1.19104 0.90788 0.92886 0.94162 1.41538 1.30425 1.25542 1.31356 1.15667 0.79915 0.79516 0.83072 1.90818 1.65640 1.65919 1.24101 1.46479 1.37349 1.20432 1.27282 1.20422 0.96792 0.77299 1.00775 1.20806 0.95585 0.96169 0.95323 1.22289 0.95990 0.97959 1.01874 1.22950 0.99455 0.93150 0.92097 1.67676 1.17217 1.28688 1.08491 1.23290 0.89775 0.94674 0.99610 1.22377 1.02149 0.96725 0.95476 1.21984 0.92483 1.03371 0.89701 1.23571 0.98318 0.97485 0.99828 1.23531 0.95752 1.00014 1.02902 1.77256 1.05008 1.18102 1.17520 0.92983 0.92858 0.96671 0.78221 0.81245 0.74515 0.85316 0.89350 0.85368 0.82184 0.80169 0.81362 0.85883 0.86453 0.85795 0.86896 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.29 13.65 21.45 0.29 -54.00 16 2 C -0.02 -1.08 5.46 84.66 0.46 -0.62 16 3 Si 1.12 49.80 29.90 68.60 2.05 51.86 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.62 -35.60 9.24 25.60 0.24 -35.37 16 8 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.26 13.55 5.57 85.63 0.48 14.02 16 10 N -0.34 -16.44 3.67 -351.85 -1.29 -17.73 16 11 C 0.05 2.20 11.44 83.52 0.96 3.15 16 12 C -0.29 -11.35 9.61 22.11 0.21 -11.14 16 13 C 0.29 11.66 8.11 133.31 1.08 12.74 16 14 N -0.64 -20.03 5.35 -321.22 -1.72 -21.74 16 15 C 0.72 20.40 8.20 179.05 1.47 21.87 16 16 O -0.59 -19.73 12.08 -4.02 -0.05 -19.78 16 17 N -0.58 -10.93 2.79 -820.01 -2.29 -13.22 16 18 C 0.17 2.50 5.12 85.63 0.44 2.94 16 19 C -0.07 -1.16 5.47 -19.67 -0.11 -1.27 16 20 C -0.16 -3.47 9.71 22.36 0.22 -3.25 16 21 C 0.08 1.72 11.18 84.68 0.95 2.66 16 22 N -0.51 -11.09 10.36 -195.85 -2.03 -13.12 16 23 C 0.08 1.28 11.18 84.68 0.95 2.23 16 24 C -0.15 -1.81 9.67 22.36 0.22 -1.60 16 25 C 0.03 0.37 5.90 45.00 0.27 0.64 16 26 C -0.15 -0.92 9.58 30.60 0.29 -0.63 16 27 C -0.18 -1.67 10.36 30.60 0.32 -1.35 16 28 N -0.35 -16.50 12.42 -54.44 -0.68 -17.18 16 29 H 0.26 15.17 7.22 -92.70 -0.67 14.50 16 30 H 0.05 2.66 7.94 -2.39 -0.02 2.64 16 31 H 0.02 0.84 8.00 -2.39 -0.02 0.83 16 32 H 0.20 6.31 8.06 -2.91 -0.02 6.28 16 33 H 0.17 6.43 5.93 -2.91 -0.02 6.41 16 34 H 0.42 11.07 6.66 -92.71 -0.62 10.45 16 35 H 0.13 0.95 5.89 -2.39 -0.01 0.93 16 36 H 0.09 1.58 7.47 -2.39 -0.02 1.56 16 37 H 0.13 3.14 7.14 -2.91 -0.02 3.12 16 38 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.17 0.78 6.31 -2.91 -0.02 0.76 16 41 H 0.12 1.69 6.71 -2.39 -0.02 1.68 16 42 H 0.12 0.35 4.43 -2.39 -0.01 0.34 16 43 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.94 377.48 3.24 -73.69 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.53 Total: 26.20 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 8.43 Total: 5.02 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -7.71 Total: -136.99 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.86 kcal Total: -76.94 3.24 -73.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.525 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds