Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48506 * 109.46958 * 269.99835 * 3 2 1 5 5 H 1.48498 * 109.47451 * 29.99893 * 3 2 1 6 6 H 1.48496 * 109.46922 * 150.00427 * 3 2 1 7 7 C 1.37880 * 119.99574 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00239 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99805 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47252 * 179.97438 * 9 7 2 11 11 C 1.34978 * 125.97174 * 124.99962 * 10 9 7 12 12 C 1.35232 * 107.86609 * 179.71141 * 11 10 9 13 13 C 1.40427 * 107.86539 * 0.42712 * 12 11 10 14 14 N 1.40060 * 125.97797 * 179.82695 * 13 12 11 15 15 C 1.34776 * 120.00169 * 359.72446 * 14 13 12 16 16 O 1.21539 * 119.99384 * 359.97438 * 15 14 13 17 17 C 1.48137 * 120.00566 * 179.97438 * 15 14 13 18 18 C 1.39060 * 119.69661 * 180.27209 * 17 15 14 19 19 C 1.39434 * 118.95673 * 180.24814 * 18 17 15 20 20 N 1.39200 * 120.82871 * 179.75975 * 19 18 17 21 21 C 1.47851 * 110.99723 * 202.73146 * 20 19 18 22 22 C 1.54903 * 104.79323 * 146.36425 * 21 20 19 23 23 C 1.55141 * 101.65394 * 322.92899 * 22 21 20 24 24 C 1.47442 * 110.99813 * 323.57310 * 20 19 18 25 25 C 1.39424 * 118.34219 * 359.48498 * 19 18 17 26 26 C 1.38229 * 119.26308 * 0.25011 * 25 19 18 27 27 N 1.31652 * 120.99804 * 0.02562 * 26 25 19 28 28 N 1.31244 * 108.04680 * 359.56640 * 13 12 11 29 29 H 0.97003 * 119.99957 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47497 * 59.99915 * 9 7 2 31 31 H 1.09004 * 109.47516 * 299.99972 * 9 7 2 32 32 H 1.07997 * 126.06786 * 359.97438 * 11 10 9 33 33 H 1.07993 * 126.06957 * 180.26209 * 12 11 10 34 34 H 0.97006 * 120.00244 * 179.71362 * 14 13 12 35 35 H 1.07999 * 120.51751 * 359.97438 * 18 17 15 36 36 H 1.08999 * 110.37312 * 27.53286 * 21 20 19 37 37 H 1.08998 * 110.36860 * 265.19330 * 21 20 19 38 38 H 1.09003 * 110.98703 * 204.83867 * 22 21 20 39 39 H 1.08999 * 110.99178 * 81.01939 * 22 21 20 40 40 H 1.08996 * 110.70774 * 154.04284 * 23 22 21 41 41 H 1.09003 * 110.70104 * 277.26964 * 23 22 21 42 42 H 1.08999 * 109.88688 * 117.33790 * 24 20 19 43 43 H 1.09003 * 109.89036 * 356.14944 * 24 20 19 44 44 H 1.07993 * 120.37074 * 180.23326 * 25 19 18 45 45 H 1.08003 * 119.50001 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0013 11 6 4.8544 -3.1151 -0.8933 12 6 5.0607 -4.4051 -0.5439 13 6 4.2953 -4.6684 0.6036 14 7 4.2250 -5.8911 1.2831 15 6 4.9304 -6.9502 0.8393 16 8 5.6272 -6.8444 -0.1509 17 6 4.8566 -8.2434 1.5582 18 6 5.5915 -9.3304 1.0980 19 6 5.5065 -10.5417 1.7834 20 7 6.2215 -11.6561 1.3539 21 6 5.6020 -12.9051 1.8462 22 6 5.8543 -13.9413 0.7228 23 6 5.6916 -13.0694 -0.5501 24 6 6.2813 -11.7103 -0.1183 25 6 4.6920 -10.6072 2.9131 26 6 3.9968 -9.4807 3.3111 27 7 4.0931 -8.3522 2.6399 28 7 3.6617 -3.5667 0.9313 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6798 0.8894 31 1 3.8745 -0.6810 -0.8905 32 1 5.2983 -2.6057 -1.7358 33 1 5.6985 -5.1088 -1.0579 34 1 3.6687 -5.9756 2.0733 35 1 6.2149 -9.2391 0.2208 36 1 4.5320 -12.7635 1.9986 37 1 6.0789 -13.2257 2.7724 38 1 5.1086 -14.7358 0.7499 39 1 6.8621 -14.3513 0.7890 40 1 6.2592 -13.4897 -1.3802 41 1 4.6392 -12.9664 -0.8146 42 1 7.3166 -11.6330 -0.4504 43 1 5.6915 -10.8982 -0.5436 44 1 4.6050 -11.5278 3.4709 45 1 3.3651 -9.5270 4.1859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194728145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 107.260791 kcal Electronic energy + Delta-G solvation = -27950.603555 eV Core-core repulsion = 23970.635139 eV Total energy + Delta-G solvation = -3979.968416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.39311 -40.65046 -39.50170 -38.41692 -34.86576 -33.86143 -33.22352 -32.07686 -31.17572 -29.77825 -29.63538 -29.35839 -27.24355 -25.10712 -24.00068 -22.86162 -22.16371 -21.33332 -21.20165 -20.19630 -19.55999 -18.30152 -17.20434 -17.03446 -16.72514 -16.59904 -16.03026 -15.57664 -15.43207 -15.30973 -14.89125 -14.50284 -14.44100 -14.11505 -14.00807 -13.71666 -13.48960 -13.35785 -13.07941 -12.80789 -12.51683 -12.31797 -12.14372 -12.05840 -11.86290 -11.69571 -11.29748 -11.15195 -10.77241 -10.75728 -10.63589 -10.24308 -9.98657 -9.97027 -9.65611 -9.52689 -9.48868 -8.74412 -8.70753 -8.17110 -7.51167 -6.21081 -4.23287 0.38007 0.90478 2.34848 2.65959 2.83955 3.16189 3.17759 3.24641 3.25994 3.51301 3.64741 3.85493 3.92506 3.95804 4.08692 4.25071 4.36784 4.46769 4.54694 4.65243 4.74922 4.86616 4.92082 5.05821 5.06633 5.17351 5.23188 5.25046 5.29530 5.38550 5.40374 5.47845 5.51092 5.62649 5.73540 6.07514 6.20196 6.27238 6.39658 6.44986 6.55738 6.57353 6.67820 7.26350 7.35092 7.45699 7.67101 7.83117 8.19619 8.35800 8.58299 8.89196 9.33749 10.91626 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.001898 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.773500 B =14751.031717 C =15205.932378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.051 3.949 12 C -0.283 4.283 13 C 0.258 3.742 14 N -0.608 5.608 15 C 0.578 3.422 16 O -0.511 6.511 17 C 0.114 3.886 18 C -0.148 4.148 19 C 0.148 3.852 20 N -0.473 5.473 21 C 0.035 3.965 22 C -0.130 4.130 23 C -0.142 4.142 24 C 0.033 3.967 25 C -0.202 4.202 26 C 0.129 3.871 27 N -0.481 5.481 28 N -0.292 5.292 29 H 0.268 0.732 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.423 0.577 35 H 0.152 0.848 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.142 0.858 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 -28.272 2.979 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.314 4.314 13 C 0.005 3.995 14 N -0.255 5.255 15 C 0.362 3.638 16 O -0.385 6.385 17 C -0.024 4.024 18 C -0.172 4.172 19 C 0.040 3.960 20 N -0.186 5.186 21 C -0.090 4.090 22 C -0.168 4.168 23 C -0.181 4.181 24 C -0.092 4.092 25 C -0.225 4.225 26 C -0.030 4.030 27 N -0.194 5.194 28 N -0.122 5.122 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.187 0.813 33 H 0.179 0.821 34 H 0.260 0.740 35 H 0.170 0.830 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.442 -26.667 3.505 29.635 hybrid contribution 0.367 -0.224 -0.574 0.717 sum 12.809 -26.891 2.931 29.930 Atomic orbital electron populations 1.69875 1.06151 1.27267 1.49173 1.24836 0.94877 0.98790 0.94284 0.86903 0.80455 0.83839 0.78885 1.19736 1.20538 1.18853 1.21112 0.87774 0.95738 1.52613 0.89604 1.20061 0.97486 0.72961 0.98234 1.48648 1.32430 1.10313 1.18556 1.22555 0.95909 0.94650 0.96708 1.21547 1.11291 0.96941 1.01663 1.19092 0.99087 0.86603 0.94732 1.42204 1.46193 1.06875 1.30251 1.17735 0.79837 0.82432 0.83790 1.90723 1.39657 1.83069 1.25030 1.20754 0.95130 0.93504 0.93015 1.21773 1.01921 0.91399 1.02128 1.19342 0.90059 0.91953 0.94664 1.60272 1.45692 1.01669 1.10975 1.23359 0.98579 0.87605 0.99458 1.22745 1.03040 0.97402 0.93656 1.22809 1.01860 0.94859 0.98542 1.23191 1.03111 0.98564 0.84366 1.22170 0.99683 1.01501 0.99160 1.22621 0.95839 0.86902 0.97687 1.67636 1.18091 1.27445 1.06255 1.77436 1.23514 0.95575 1.15712 0.92198 0.93968 0.93284 0.81298 0.82063 0.73972 0.83026 0.91506 0.89129 0.90019 0.90173 0.89846 0.90853 0.89124 0.90527 0.84058 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.96 55.43 0.77 -26.04 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 20.30 27.47 -169.99 -4.67 15.63 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -15.26 9.79 -34.44 -0.34 -15.59 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.23 5.56 5.33 -5.19 -0.03 5.53 16 10 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 11 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 12 C -0.28 -5.62 9.60 -39.83 -0.38 -6.00 16 13 C 0.26 5.40 8.10 -154.46 -1.25 4.15 16 14 N -0.61 -10.65 5.43 -11.91 -0.06 -10.71 16 15 C 0.58 9.34 7.78 -12.20 -0.09 9.24 16 16 O -0.51 -9.08 13.44 5.33 0.07 -9.01 16 17 C 0.11 1.51 6.74 -83.06 -0.56 0.95 16 18 C -0.15 -1.66 8.18 -38.83 -0.32 -1.98 16 19 C 0.15 1.35 5.79 -83.63 -0.48 0.87 16 20 N -0.47 -3.57 5.26 -167.74 -0.88 -4.46 16 21 C 0.04 0.18 5.52 -2.30 -0.01 0.17 16 22 C -0.13 -0.51 7.08 -24.59 -0.17 -0.69 16 23 C -0.14 -0.67 6.94 -24.91 -0.17 -0.84 16 24 C 0.03 0.22 6.22 -2.84 -0.02 0.20 16 25 C -0.20 -1.56 8.73 -39.14 -0.34 -1.91 16 26 C 0.13 1.14 11.17 -17.63 -0.20 0.95 16 27 N -0.48 -5.84 9.54 -9.90 -0.09 -5.94 16 28 N -0.29 -6.92 12.42 31.43 0.39 -6.53 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 31 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 32 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 33 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 34 H 0.42 6.79 8.15 -40.82 -0.33 6.46 16 35 H 0.15 1.67 6.46 -52.49 -0.34 1.33 16 36 H 0.07 0.32 6.54 -51.93 -0.34 -0.02 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.57 5.98 -51.93 -0.31 0.26 16 44 H 0.14 0.70 6.53 -52.49 -0.34 0.36 16 45 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -34.68 371.43 -9.48 -44.16 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.71 Total: 6.96 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -4.67 Total: -2.10 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.11 Total: -61.24 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.68 -9.48 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194728145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.424 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds