Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00087 * 2 1 4 4 H 1.48506 * 109.46958 * 269.99835 * 3 2 1 5 5 H 1.48498 * 109.47451 * 29.99893 * 3 2 1 6 6 H 1.48496 * 109.46922 * 150.00427 * 3 2 1 7 7 C 1.37880 * 119.99574 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00239 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99805 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47252 * 179.97438 * 9 7 2 11 11 C 1.34978 * 125.97174 * 124.99962 * 10 9 7 12 12 C 1.35232 * 107.86609 * 179.71141 * 11 10 9 13 13 C 1.40427 * 107.86539 * 0.42712 * 12 11 10 14 14 N 1.40060 * 125.97797 * 179.82695 * 13 12 11 15 15 C 1.34776 * 120.00169 * 359.72446 * 14 13 12 16 16 O 1.21539 * 119.99384 * 359.97438 * 15 14 13 17 17 C 1.48137 * 120.00566 * 179.97438 * 15 14 13 18 18 C 1.39060 * 119.69661 * 180.27209 * 17 15 14 19 19 C 1.39434 * 118.95673 * 180.24814 * 18 17 15 20 20 N 1.39200 * 120.82871 * 179.75975 * 19 18 17 21 21 C 1.47851 * 110.99723 * 202.73146 * 20 19 18 22 22 C 1.54903 * 104.79323 * 146.36425 * 21 20 19 23 23 C 1.55141 * 101.65394 * 322.92899 * 22 21 20 24 24 C 1.47442 * 110.99813 * 323.57310 * 20 19 18 25 25 C 1.39424 * 118.34219 * 359.48498 * 19 18 17 26 26 C 1.38229 * 119.26308 * 0.25011 * 25 19 18 27 27 N 1.31652 * 120.99804 * 0.02562 * 26 25 19 28 28 N 1.31244 * 108.04680 * 359.56640 * 13 12 11 29 29 H 0.97003 * 119.99957 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47497 * 59.99915 * 9 7 2 31 31 H 1.09004 * 109.47516 * 299.99972 * 9 7 2 32 32 H 1.07997 * 126.06786 * 359.97438 * 11 10 9 33 33 H 1.07993 * 126.06957 * 180.26209 * 12 11 10 34 34 H 0.97006 * 120.00244 * 179.71362 * 14 13 12 35 35 H 1.07999 * 120.51751 * 359.97438 * 18 17 15 36 36 H 1.08999 * 110.37312 * 27.53286 * 21 20 19 37 37 H 1.08998 * 110.36860 * 265.19330 * 21 20 19 38 38 H 1.09003 * 110.98703 * 204.83867 * 22 21 20 39 39 H 1.08999 * 110.99178 * 81.01939 * 22 21 20 40 40 H 1.08996 * 110.70774 * 154.04284 * 23 22 21 41 41 H 1.09003 * 110.70104 * 277.26964 * 23 22 21 42 42 H 1.08999 * 109.88688 * 117.33790 * 24 20 19 43 43 H 1.09003 * 109.89036 * 356.14944 * 24 20 19 44 44 H 1.07993 * 120.37074 * 180.23326 * 25 19 18 45 45 H 1.08003 * 119.50001 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0013 11 6 4.8544 -3.1151 -0.8933 12 6 5.0607 -4.4051 -0.5439 13 6 4.2953 -4.6684 0.6036 14 7 4.2250 -5.8911 1.2831 15 6 4.9304 -6.9502 0.8393 16 8 5.6272 -6.8444 -0.1509 17 6 4.8566 -8.2434 1.5582 18 6 5.5915 -9.3304 1.0980 19 6 5.5065 -10.5417 1.7834 20 7 6.2215 -11.6561 1.3539 21 6 5.6020 -12.9051 1.8462 22 6 5.8543 -13.9413 0.7228 23 6 5.6916 -13.0694 -0.5501 24 6 6.2813 -11.7103 -0.1183 25 6 4.6920 -10.6072 2.9131 26 6 3.9968 -9.4807 3.3111 27 7 4.0931 -8.3522 2.6399 28 7 3.6617 -3.5667 0.9313 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6798 0.8894 31 1 3.8745 -0.6810 -0.8905 32 1 5.2983 -2.6057 -1.7358 33 1 5.6985 -5.1088 -1.0579 34 1 3.6687 -5.9756 2.0733 35 1 6.2149 -9.2391 0.2208 36 1 4.5320 -12.7635 1.9986 37 1 6.0789 -13.2257 2.7724 38 1 5.1086 -14.7358 0.7499 39 1 6.8621 -14.3513 0.7890 40 1 6.2592 -13.4897 -1.3802 41 1 4.6392 -12.9664 -0.8146 42 1 7.3166 -11.6330 -0.4504 43 1 5.6915 -10.8982 -0.5436 44 1 4.6050 -11.5278 3.4709 45 1 3.3651 -9.5270 4.1859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194728145.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = 82.701772 kcal Electronic energy + Delta-G solvation = -27951.668514 eV Core-core repulsion = 23970.635139 eV Total energy + Delta-G solvation = -3981.033375 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.41817 -41.92670 -40.60131 -39.28003 -36.36286 -35.25537 -34.41700 -33.26389 -32.64117 -31.04228 -30.38215 -30.14447 -29.04597 -26.21212 -24.67305 -24.42113 -23.27874 -22.38685 -21.82341 -21.58388 -20.89160 -19.23720 -19.11447 -18.21009 -18.04120 -17.24857 -17.13767 -16.74091 -16.63413 -16.35185 -16.17278 -15.82390 -15.41165 -15.18837 -14.98840 -14.82539 -14.66850 -14.37095 -14.17582 -13.88984 -13.86259 -13.85010 -13.35872 -13.02062 -12.73600 -12.52995 -12.34853 -12.22464 -12.10380 -11.84167 -11.68291 -11.63670 -11.52531 -11.37928 -11.29035 -10.86885 -10.67401 -10.33523 -9.81146 -9.33173 -9.15230 -8.37398 -6.47948 -0.51530 0.16608 0.95951 1.23710 1.36670 1.41351 1.45383 1.50395 2.12856 2.20535 2.29320 2.57819 2.86046 2.94904 2.99438 3.44987 3.54313 3.75410 3.85122 3.90189 3.97617 4.02390 4.16365 4.22897 4.30148 4.43808 4.49112 4.58897 4.63826 4.65936 4.73597 4.78287 4.82648 4.85122 4.86584 4.88574 5.02060 5.06385 5.08049 5.23956 5.26608 5.40189 5.71044 5.80769 5.94374 5.98940 6.09095 6.39630 6.57580 6.68485 6.92195 6.98550 7.14780 8.79830 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.001898 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.773500 B =14751.031717 C =15205.932378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.252 1.252 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.548 4.548 8 H 0.025 0.975 9 C 0.238 3.762 10 N -0.341 5.341 11 C 0.064 3.936 12 C -0.294 4.294 13 C 0.261 3.739 14 N -0.610 5.610 15 C 0.578 3.422 16 O -0.532 6.532 17 C 0.091 3.909 18 C -0.152 4.152 19 C 0.146 3.854 20 N -0.480 5.480 21 C 0.030 3.970 22 C -0.125 4.125 23 C -0.140 4.140 24 C 0.028 3.972 25 C -0.184 4.184 26 C 0.125 3.875 27 N -0.505 5.505 28 N -0.346 5.346 29 H 0.272 0.728 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.216 0.784 33 H 0.171 0.829 34 H 0.426 0.574 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.177 0.823 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.901 -29.529 3.274 33.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.163 1.163 7 C -0.586 4.586 8 H 0.043 0.957 9 C 0.119 3.881 10 N -0.123 5.123 11 C -0.084 4.084 12 C -0.324 4.324 13 C 0.006 3.994 14 N -0.258 5.258 15 C 0.365 3.635 16 O -0.407 6.407 17 C -0.045 4.045 18 C -0.176 4.176 19 C 0.038 3.962 20 N -0.193 5.193 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.178 4.178 24 C -0.097 4.097 25 C -0.207 4.207 26 C -0.034 4.034 27 N -0.219 5.219 28 N -0.176 5.176 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.233 0.767 33 H 0.188 0.812 34 H 0.265 0.735 35 H 0.163 0.837 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.195 0.805 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 14.499 -27.984 3.797 31.745 hybrid contribution -0.279 -0.127 -0.633 0.703 sum 14.219 -28.111 3.164 31.661 Atomic orbital electron populations 1.70056 1.08600 1.28821 1.50605 1.25951 0.95808 1.03616 0.93177 0.85588 0.79458 0.77035 0.80115 1.17599 1.20609 1.16256 1.21228 0.90523 0.93737 1.53153 0.95694 1.19928 0.94179 0.74201 0.99805 1.48562 1.33928 1.10123 1.19722 1.23295 0.94062 0.94480 0.96528 1.21775 1.11582 0.97526 1.01565 1.19476 0.97991 0.86988 0.94929 1.42358 1.46780 1.06282 1.30392 1.18297 0.78690 0.82992 0.83542 1.90677 1.40391 1.83612 1.26021 1.20313 0.97545 0.92366 0.94325 1.21753 1.01721 0.91918 1.02234 1.19493 0.90097 0.91735 0.94892 1.60307 1.45394 1.02125 1.11449 1.23538 0.98974 0.86591 1.00367 1.22754 1.03814 0.97268 0.92417 1.22807 1.01697 0.93882 0.99433 1.23228 1.03126 0.99339 0.84012 1.22544 0.97622 1.02357 0.98195 1.23221 0.95990 0.86163 0.98000 1.67571 1.18527 1.29396 1.06396 1.77347 1.25774 0.96873 1.17635 0.91865 0.93591 0.89715 0.76741 0.81160 0.73546 0.83679 0.90788 0.87801 0.88423 0.89814 0.88824 0.91086 0.89041 0.91981 0.80533 0.78577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.96 41.27 27.47 68.60 1.88 43.16 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 7 C -0.55 -32.35 9.79 25.60 0.25 -32.10 16 8 H 0.02 1.72 8.06 -2.92 -0.02 1.70 16 9 C 0.24 11.29 5.33 85.63 0.46 11.75 16 10 N -0.34 -15.86 3.67 -351.84 -1.29 -17.15 16 11 C 0.06 2.45 11.44 83.52 0.96 3.40 16 12 C -0.29 -11.71 9.60 22.11 0.21 -11.49 16 13 C 0.26 11.28 8.10 133.36 1.08 12.36 16 14 N -0.61 -22.44 5.43 -309.87 -1.68 -24.12 16 15 C 0.58 19.52 7.78 86.87 0.68 20.19 16 16 O -0.53 -19.59 13.44 -3.84 -0.05 -19.64 16 17 C 0.09 2.48 6.74 41.82 0.28 2.76 16 18 C -0.15 -3.45 8.18 22.76 0.19 -3.26 16 19 C 0.15 2.48 5.79 38.55 0.22 2.71 16 20 N -0.48 -6.41 5.26 -684.61 -3.60 -10.02 16 21 C 0.03 0.21 5.52 86.77 0.48 0.69 16 22 C -0.12 -0.63 7.08 31.98 0.23 -0.41 16 23 C -0.14 -1.07 6.94 31.77 0.22 -0.85 16 24 C 0.03 0.35 6.22 86.65 0.54 0.89 16 25 C -0.18 -2.37 8.73 22.55 0.20 -2.17 16 26 C 0.13 2.00 11.17 84.72 0.95 2.94 16 27 N -0.50 -12.24 9.54 -185.22 -1.77 -14.01 16 28 N -0.35 -17.07 12.42 -54.49 -0.68 -17.74 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.05 2.13 7.20 -2.39 -0.02 2.12 16 31 H 0.09 3.41 7.50 -2.39 -0.02 3.39 16 32 H 0.22 5.85 8.06 -2.91 -0.02 5.83 16 33 H 0.17 6.44 5.91 -2.91 -0.02 6.43 16 34 H 0.43 14.60 8.15 -92.70 -0.76 13.84 16 35 H 0.15 3.37 6.46 -2.91 -0.02 3.35 16 36 H 0.07 0.44 6.54 -2.39 -0.02 0.43 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 0.95 5.98 -2.39 -0.01 0.93 16 44 H 0.18 0.99 6.53 -2.91 -0.02 0.97 16 45 H 0.20 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -80.83 371.43 0.73 -80.09 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.23 Total: 29.39 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 7.39 Total: 8.64 kcal Atomic # 7 Polarization: -132.91 SS G_CDS: -8.72 Total: -141.63 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.05 Total: -19.64 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.16 kcal Total: -80.83 0.73 -80.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194728145.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.794 kcal (2) G-P(sol) polarization free energy of solvation -80.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds