Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47373 * 270.00696 * 3 2 1 5 5 H 1.48511 * 109.46747 * 30.00510 * 3 2 1 6 6 H 1.48498 * 109.47292 * 150.00219 * 3 2 1 7 7 C 1.37872 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00454 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47560 * 179.97438 * 9 7 2 11 11 C 1.46502 * 120.00067 * 84.26709 * 10 9 7 12 12 C 1.52998 * 109.46993 * 91.92150 * 11 10 9 13 13 C 1.53005 * 117.50095 * 243.74663 * 12 11 10 14 14 C 1.53002 * 117.50179 * 175.08721 * 12 11 10 15 15 C 1.34779 * 120.00091 * 264.26675 * 10 9 7 16 16 O 1.21685 * 119.99873 * 185.44041 * 15 10 9 17 17 C 1.46766 * 119.99636 * 5.44908 * 15 10 9 18 18 C 1.41533 * 126.51072 * 42.94533 * 17 15 10 19 19 N 1.30295 * 108.25629 * 179.97438 * 18 17 15 20 20 N 1.39900 * 109.25071 * 359.97438 * 19 18 17 21 21 C 1.39732 * 125.77406 * 180.02562 * 20 19 18 22 22 C 1.38977 * 119.68955 * 334.69706 * 21 20 19 23 23 C 1.38394 * 119.10685 * 179.77962 * 22 21 20 24 24 C 1.38816 * 118.48446 * 0.48927 * 23 22 21 25 25 C 1.38111 * 119.30061 * 359.75044 * 24 23 22 26 26 N 1.31910 * 120.84126 * 0.02562 * 25 24 23 27 27 C 1.35239 * 108.44816 * 359.76829 * 20 19 18 28 28 N 1.37928 * 126.46857 * 180.25484 * 27 20 19 29 29 H 0.97005 * 120.00390 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47195 * 59.99504 * 9 7 2 31 31 H 1.09006 * 109.46560 * 300.00380 * 9 7 2 32 32 H 1.09000 * 109.47346 * 211.91972 * 11 10 9 33 33 H 1.08999 * 109.47095 * 331.92067 * 11 10 9 34 34 H 1.09005 * 115.55355 * 29.41903 * 12 11 10 35 35 H 1.08999 * 117.49656 * 0.02562 * 13 12 11 36 36 H 1.09002 * 117.49992 * 145.01603 * 13 12 11 37 37 H 1.09001 * 117.50021 * 214.98137 * 14 12 11 38 38 H 1.09005 * 117.49141 * 0.02562 * 14 12 11 39 39 H 1.08001 * 125.87247 * 359.92151 * 18 17 15 40 40 H 1.07998 * 120.44402 * 0.02562 * 22 21 20 41 41 H 1.07999 * 120.76194 * 180.26606 * 23 22 21 42 42 H 1.08001 * 120.35038 * 179.72933 * 24 23 22 43 43 H 1.07997 * 119.58208 * 179.97438 * 25 24 23 44 44 H 0.96999 * 120.00285 * 180.14104 * 28 27 20 45 45 H 0.97001 * 120.00130 * 0.13469 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.7754 -4.0882 1.2593 12 6 1.9097 -5.2194 1.8176 13 6 1.2095 -4.9782 3.1565 14 6 2.4046 -5.9315 3.0781 15 6 2.5524 -4.1996 -1.1646 16 8 3.2647 -5.1861 -1.1578 17 6 2.0737 -3.6487 -2.4379 18 6 2.0208 -2.2806 -2.7968 19 7 1.5382 -2.1936 -4.0039 20 7 1.2585 -3.4781 -4.4825 21 6 0.7300 -3.7844 -5.7392 22 6 -0.0363 -2.8405 -6.4125 23 6 -0.5500 -3.1550 -7.6585 24 6 -0.2864 -4.4120 -8.1852 25 6 0.4789 -5.3026 -7.4582 26 7 0.9589 -4.9727 -6.2746 27 6 1.5915 -4.3734 -3.5252 28 7 1.4730 -5.7451 -3.6087 29 1 -0.4851 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6240 -2.5574 0.8880 32 1 3.7860 -4.4568 1.0838 33 1 2.8073 -3.2675 1.9758 34 1 1.3830 -5.8188 1.0750 35 1 1.3653 -4.0135 3.6393 36 1 0.2223 -5.4192 3.2948 37 1 2.2032 -6.9992 3.1649 38 1 3.3468 -5.5937 3.5098 39 1 2.3269 -1.4513 -2.1763 40 1 -0.2251 -1.8732 -5.9709 41 1 -1.1453 -2.4401 -8.2070 42 1 -0.6760 -4.6908 -9.1531 43 1 0.6864 -6.2819 -7.8634 44 1 1.7400 -6.3014 -2.8603 45 1 1.1227 -6.1534 -4.4158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339930121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 117.607008 kcal Electronic energy + Delta-G solvation = -29636.564447 eV Core-core repulsion = 25657.044676 eV Total energy + Delta-G solvation = -3979.519771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33976 -39.90945 -38.60416 -36.75023 -34.88448 -34.21998 -33.29959 -32.54801 -32.44097 -29.56208 -28.54200 -27.63369 -26.01396 -23.99600 -23.82832 -22.85858 -22.02476 -21.46048 -20.80466 -20.17779 -18.66803 -17.92935 -16.83527 -16.54551 -16.28840 -16.13954 -15.80120 -15.48582 -15.32007 -14.97682 -14.48265 -14.41044 -14.24919 -13.97930 -13.66613 -13.36821 -13.10107 -12.73511 -12.48903 -12.25134 -12.15050 -11.85306 -11.34244 -11.22338 -11.13250 -10.92812 -10.86946 -10.70279 -10.45544 -10.26708 -10.18679 -10.06372 -9.94296 -9.76714 -9.67562 -9.44870 -8.98470 -8.53693 -8.17361 -7.64867 -7.29195 -6.15545 -4.23478 0.73592 1.01466 2.26124 2.43636 3.00991 3.25904 3.33741 3.36497 3.60665 3.87523 4.00440 4.11149 4.24766 4.29946 4.42587 4.58963 4.78521 4.86711 5.00619 5.12815 5.16592 5.29633 5.36209 5.46175 5.57770 5.62920 5.83686 5.89274 5.90789 5.95664 6.01108 6.18622 6.21450 6.26576 6.31617 6.41106 6.45819 6.67696 6.92096 6.92839 7.22478 7.34494 7.57751 7.63677 7.70209 7.79771 7.83142 8.11634 8.32680 8.49481 8.85266 9.19054 9.43629 10.89823 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.004069 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.999369 B = 6880.047434 C = 9188.096619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.070 3.930 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.238 3.762 10 N -0.587 5.587 11 C 0.154 3.846 12 C -0.152 4.152 13 C -0.180 4.180 14 C -0.182 4.182 15 C 0.601 3.399 16 O -0.584 6.584 17 C -0.349 4.349 18 C 0.162 3.838 19 N -0.319 5.319 20 N -0.357 5.357 21 C 0.386 3.614 22 C -0.161 4.161 23 C -0.051 4.051 24 C -0.197 4.197 25 C 0.130 3.870 26 N -0.521 5.521 27 C 0.431 3.569 28 N -0.825 5.825 29 H 0.265 0.735 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.221 0.779 40 H 0.150 0.850 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.163 0.837 44 H 0.420 0.580 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -9.388 -9.866 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.118 3.882 10 N -0.316 5.316 11 C 0.031 3.969 12 C -0.172 4.172 13 C -0.217 4.217 14 C -0.219 4.219 15 C 0.391 3.609 16 O -0.467 6.467 17 C -0.368 4.368 18 C -0.027 4.027 19 N -0.136 5.136 20 N -0.139 5.139 21 C 0.159 3.841 22 C -0.184 4.184 23 C -0.078 4.078 24 C -0.218 4.218 25 C -0.028 4.028 26 N -0.236 5.236 27 C 0.202 3.798 28 N -0.373 5.373 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.237 0.763 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.252 0.748 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.886 -9.539 -10.332 14.188 hybrid contribution -0.082 0.727 0.189 0.755 sum -1.968 -8.813 -10.143 13.580 Atomic orbital electron populations 1.69930 1.06026 1.27290 1.48639 1.24941 0.94776 0.99094 0.94637 0.86633 0.79962 0.83231 0.78582 1.20148 1.21129 1.19675 1.21531 0.93730 0.90582 1.52283 0.91747 1.19453 0.87569 0.82418 0.98727 1.47976 1.44622 1.34672 1.04291 1.20803 0.95653 0.94476 0.86007 1.22757 1.02782 1.00923 0.90725 1.23026 0.96358 1.00919 1.01377 1.22891 0.98652 0.97741 1.02651 1.16983 0.79083 0.82082 0.82772 1.90662 1.40221 1.27753 1.88074 1.19295 1.27304 0.93285 0.96952 1.25097 0.89682 0.97250 0.90717 1.77389 1.27753 0.93572 1.14896 1.45453 1.53434 1.05489 1.09519 1.17796 0.91553 0.90552 0.84243 1.21737 0.98692 1.01691 0.96263 1.21532 0.96064 0.96342 0.93828 1.22070 1.02445 0.95079 1.02171 1.22474 0.92496 0.99513 0.88281 1.66822 1.23746 1.18813 1.14210 1.18089 0.90864 0.83088 0.87766 1.41700 1.71844 1.01430 1.22350 0.92490 0.93919 0.94895 0.90875 0.90137 0.88285 0.88585 0.89470 0.89423 0.88988 0.76299 0.83223 0.84034 0.84362 0.81955 0.74756 0.76011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.68 13.29 55.43 0.74 -22.94 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.42 6.67 -34.44 -0.23 -13.65 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.24 5.64 4.67 -5.20 -0.02 5.61 16 10 N -0.59 -12.52 2.46 -176.57 -0.43 -12.96 16 11 C 0.15 2.90 5.64 -4.04 -0.02 2.88 16 12 C -0.15 -2.53 6.00 -90.62 -0.54 -3.08 16 13 C -0.18 -2.63 10.18 -26.69 -0.27 -2.90 16 14 C -0.18 -2.48 10.25 -26.69 -0.27 -2.75 16 15 C 0.60 13.16 7.37 -12.81 -0.09 13.06 16 16 O -0.58 -13.30 16.07 5.20 0.08 -13.22 16 17 C -0.35 -7.44 4.98 -104.81 -0.52 -7.97 16 18 C 0.16 3.52 9.91 -16.95 -0.17 3.35 16 19 N -0.32 -6.62 11.97 30.89 0.37 -6.25 16 20 N -0.36 -6.75 3.75 -11.07 -0.04 -6.79 16 21 C 0.39 6.14 7.38 -154.43 -1.14 5.00 16 22 C -0.16 -2.17 9.73 -39.25 -0.38 -2.55 16 23 C -0.05 -0.49 10.17 -39.31 -0.40 -0.89 16 24 C -0.20 -1.63 10.11 -39.41 -0.40 -2.02 16 25 C 0.13 1.26 11.18 -17.56 -0.20 1.06 16 26 N -0.52 -7.11 8.07 -12.30 -0.10 -7.21 16 27 C 0.43 8.31 7.89 -153.52 -1.21 7.10 16 28 N -0.83 -13.11 8.97 31.45 0.28 -12.83 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.04 1.09 6.00 -51.93 -0.31 0.78 16 31 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.07 1.38 7.56 -51.93 -0.39 0.99 16 33 H 0.08 1.50 7.79 -51.93 -0.40 1.09 16 34 H 0.10 1.77 8.14 -51.93 -0.42 1.34 16 35 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.22 5.00 5.34 -52.49 -0.28 4.72 16 40 H 0.15 2.10 7.89 -52.49 -0.41 1.69 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.42 6.52 8.08 -40.82 -0.33 6.19 16 45 H 0.41 5.68 6.84 -40.82 -0.28 5.40 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -30.16 381.55 -10.10 -40.26 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -5.76 Total: 17.41 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -5.97 Total: 3.92 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: 0.81 Total: -68.99 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.16 -10.10 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339930121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.869 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds