Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47373 * 270.00696 * 3 2 1 5 5 H 1.48511 * 109.46747 * 30.00510 * 3 2 1 6 6 H 1.48498 * 109.47292 * 150.00219 * 3 2 1 7 7 C 1.37872 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00454 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47560 * 179.97438 * 9 7 2 11 11 C 1.46502 * 120.00067 * 84.26709 * 10 9 7 12 12 C 1.52998 * 109.46993 * 91.92150 * 11 10 9 13 13 C 1.53005 * 117.50095 * 243.74663 * 12 11 10 14 14 C 1.53002 * 117.50179 * 175.08721 * 12 11 10 15 15 C 1.34779 * 120.00091 * 264.26675 * 10 9 7 16 16 O 1.21685 * 119.99873 * 185.44041 * 15 10 9 17 17 C 1.46766 * 119.99636 * 5.44908 * 15 10 9 18 18 C 1.41533 * 126.51072 * 42.94533 * 17 15 10 19 19 N 1.30295 * 108.25629 * 179.97438 * 18 17 15 20 20 N 1.39900 * 109.25071 * 359.97438 * 19 18 17 21 21 C 1.39732 * 125.77406 * 180.02562 * 20 19 18 22 22 C 1.38977 * 119.68955 * 334.69706 * 21 20 19 23 23 C 1.38394 * 119.10685 * 179.77962 * 22 21 20 24 24 C 1.38816 * 118.48446 * 0.48927 * 23 22 21 25 25 C 1.38111 * 119.30061 * 359.75044 * 24 23 22 26 26 N 1.31910 * 120.84126 * 0.02562 * 25 24 23 27 27 C 1.35239 * 108.44816 * 359.76829 * 20 19 18 28 28 N 1.37928 * 126.46857 * 180.25484 * 27 20 19 29 29 H 0.97005 * 120.00390 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47195 * 59.99504 * 9 7 2 31 31 H 1.09006 * 109.46560 * 300.00380 * 9 7 2 32 32 H 1.09000 * 109.47346 * 211.91972 * 11 10 9 33 33 H 1.08999 * 109.47095 * 331.92067 * 11 10 9 34 34 H 1.09005 * 115.55355 * 29.41903 * 12 11 10 35 35 H 1.08999 * 117.49656 * 0.02562 * 13 12 11 36 36 H 1.09002 * 117.49992 * 145.01603 * 13 12 11 37 37 H 1.09001 * 117.50021 * 214.98137 * 14 12 11 38 38 H 1.09005 * 117.49141 * 0.02562 * 14 12 11 39 39 H 1.08001 * 125.87247 * 359.92151 * 18 17 15 40 40 H 1.07998 * 120.44402 * 0.02562 * 22 21 20 41 41 H 1.07999 * 120.76194 * 180.26606 * 23 22 21 42 42 H 1.08001 * 120.35038 * 179.72933 * 24 23 22 43 43 H 1.07997 * 119.58208 * 179.97438 * 25 24 23 44 44 H 0.96999 * 120.00285 * 180.14104 * 28 27 20 45 45 H 0.97001 * 120.00130 * 0.13469 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.7754 -4.0882 1.2593 12 6 1.9097 -5.2194 1.8176 13 6 1.2095 -4.9782 3.1565 14 6 2.4046 -5.9315 3.0781 15 6 2.5524 -4.1996 -1.1646 16 8 3.2647 -5.1861 -1.1578 17 6 2.0737 -3.6487 -2.4379 18 6 2.0208 -2.2806 -2.7968 19 7 1.5382 -2.1936 -4.0039 20 7 1.2585 -3.4781 -4.4825 21 6 0.7300 -3.7844 -5.7392 22 6 -0.0363 -2.8405 -6.4125 23 6 -0.5500 -3.1550 -7.6585 24 6 -0.2864 -4.4120 -8.1852 25 6 0.4789 -5.3026 -7.4582 26 7 0.9589 -4.9727 -6.2746 27 6 1.5915 -4.3734 -3.5252 28 7 1.4730 -5.7451 -3.6087 29 1 -0.4851 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6240 -2.5574 0.8880 32 1 3.7860 -4.4568 1.0838 33 1 2.8073 -3.2675 1.9758 34 1 1.3830 -5.8188 1.0750 35 1 1.3653 -4.0135 3.6393 36 1 0.2223 -5.4192 3.2948 37 1 2.2032 -6.9992 3.1649 38 1 3.3468 -5.5937 3.5098 39 1 2.3269 -1.4513 -2.1763 40 1 -0.2251 -1.8732 -5.9709 41 1 -1.1453 -2.4401 -8.2070 42 1 -0.6760 -4.6908 -9.1531 43 1 0.6864 -6.2819 -7.8634 44 1 1.7400 -6.3014 -2.8603 45 1 1.1227 -6.1534 -4.4158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339930121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = 101.148331 kcal Electronic energy + Delta-G solvation = -29637.278149 eV Core-core repulsion = 25657.044676 eV Total energy + Delta-G solvation = -3980.233473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71937 -41.02215 -40.16823 -38.11634 -36.51036 -35.75673 -34.47046 -34.35078 -33.48289 -30.76357 -30.02324 -29.45508 -27.60187 -25.25625 -24.82616 -24.60475 -23.17197 -22.92944 -22.11288 -21.54643 -20.18219 -19.32319 -18.53115 -17.89265 -17.62074 -17.40912 -17.23700 -16.93740 -16.51325 -16.23566 -16.17931 -15.86699 -15.67189 -15.18263 -14.85698 -14.53025 -14.43827 -14.18448 -14.10140 -14.05300 -13.39328 -13.20171 -12.95783 -12.81655 -12.60213 -12.53118 -12.30405 -12.24839 -12.14604 -11.91894 -11.65736 -11.29327 -11.28445 -10.97327 -10.78967 -10.73672 -10.68831 -10.48796 -9.43318 -9.35213 -8.82484 -8.13444 -6.27397 -0.27724 0.18020 0.94527 1.07139 1.35054 1.46064 1.49343 1.57154 2.23499 2.39462 2.57614 2.61368 2.78115 3.01133 3.15665 3.28794 3.59731 3.87079 3.97602 4.00777 4.05680 4.07653 4.16040 4.21458 4.32236 4.41718 4.48052 4.63424 4.74355 4.80819 4.86716 4.89047 5.00452 5.03447 5.05255 5.18409 5.30539 5.31639 5.32688 5.36798 5.57356 5.74622 5.79405 5.96947 6.14001 6.23870 6.40618 6.61224 6.67117 6.89703 6.97448 7.38230 7.51092 8.91528 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.004069 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.999369 B = 6880.047434 C = 9188.096619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.031 3.969 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.260 3.740 10 N -0.588 5.588 11 C 0.154 3.846 12 C -0.177 4.177 13 C -0.176 4.176 14 C -0.155 4.155 15 C 0.601 3.399 16 O -0.597 6.597 17 C -0.379 4.379 18 C 0.146 3.854 19 N -0.329 5.329 20 N -0.354 5.354 21 C 0.336 3.664 22 C -0.177 4.177 23 C -0.045 4.045 24 C -0.169 4.169 25 C 0.125 3.875 26 N -0.536 5.536 27 C 0.434 3.566 28 N -0.807 5.807 29 H 0.266 0.734 30 H 0.021 0.979 31 H 0.015 0.985 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.204 0.796 40 H 0.132 0.868 41 H 0.176 0.824 42 H 0.186 0.814 43 H 0.203 0.797 44 H 0.422 0.578 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 -10.794 -11.959 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.170 4.170 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.139 3.861 10 N -0.317 5.317 11 C 0.031 3.969 12 C -0.197 4.197 13 C -0.213 4.213 14 C -0.192 4.192 15 C 0.391 3.609 16 O -0.482 6.482 17 C -0.398 4.398 18 C -0.043 4.043 19 N -0.148 5.148 20 N -0.137 5.137 21 C 0.112 3.888 22 C -0.200 4.200 23 C -0.071 4.071 24 C -0.189 4.189 25 C -0.033 4.033 26 N -0.251 5.251 27 C 0.201 3.799 28 N -0.356 5.356 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.220 0.780 40 H 0.150 0.850 41 H 0.194 0.806 42 H 0.203 0.797 43 H 0.219 0.781 44 H 0.255 0.745 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.318 -10.962 -12.440 16.742 hybrid contribution -0.039 1.028 0.568 1.175 sum -2.357 -9.935 -11.873 15.659 Atomic orbital electron populations 1.70030 1.07339 1.27979 1.49874 1.25565 0.95332 1.01875 0.94269 0.85722 0.78914 0.79660 0.78493 1.19985 1.20904 1.19127 1.21612 0.93434 0.91175 1.51631 0.92207 1.19008 0.87429 0.82988 0.96640 1.47946 1.44238 1.34144 1.05325 1.20891 0.95891 0.95175 0.84912 1.22557 1.04281 1.01217 0.91629 1.23081 0.97504 1.01414 0.99333 1.23008 0.98633 0.98569 0.99008 1.17085 0.78855 0.81895 0.83069 1.90626 1.40890 1.28324 1.88313 1.19326 1.29432 0.93490 0.97588 1.24744 0.91087 0.97124 0.91315 1.77218 1.27570 0.95467 1.14502 1.45504 1.53182 1.04379 1.10663 1.18076 0.94211 0.92567 0.83989 1.21802 0.99436 1.00760 0.97987 1.21976 0.95225 0.97795 0.92142 1.22627 0.99641 0.93478 1.03134 1.23303 0.91680 1.01405 0.86907 1.66777 1.24513 1.17835 1.15965 1.18151 0.90132 0.84203 0.87386 1.41633 1.70977 1.00093 1.22855 0.92475 0.96070 0.96730 0.91210 0.90379 0.89815 0.88830 0.88396 0.87475 0.87741 0.78002 0.85015 0.80639 0.79678 0.78072 0.74501 0.74716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 13.29 21.45 0.28 -50.41 16 2 C 0.03 1.62 5.46 84.65 0.46 2.08 16 3 Si 0.95 41.68 29.54 68.60 2.03 43.71 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -27.84 6.67 25.60 0.17 -27.66 16 8 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.26 13.01 4.67 85.63 0.40 13.41 16 10 N -0.59 -26.37 2.46 -830.78 -2.04 -28.41 16 11 C 0.15 5.98 5.64 86.38 0.49 6.47 16 12 C -0.18 -5.95 6.00 -10.79 -0.06 -6.02 16 13 C -0.18 -5.04 10.18 30.62 0.31 -4.73 16 14 C -0.15 -3.97 10.25 30.62 0.31 -3.65 16 15 C 0.60 27.54 7.37 86.47 0.64 28.17 16 16 O -0.60 -28.04 16.07 -4.30 -0.07 -28.11 16 17 C -0.38 -17.06 4.98 -19.99 -0.10 -17.16 16 18 C 0.15 6.80 9.91 85.73 0.85 7.65 16 19 N -0.33 -14.50 11.97 -56.19 -0.67 -15.18 16 20 N -0.35 -13.92 3.75 -188.95 -0.71 -14.63 16 21 C 0.34 10.70 7.38 132.80 0.98 11.68 16 22 C -0.18 -4.71 9.73 22.48 0.22 -4.49 16 23 C -0.05 -0.73 10.17 22.45 0.23 -0.50 16 24 C -0.17 -1.96 10.11 22.38 0.23 -1.73 16 25 C 0.12 1.94 11.18 84.65 0.95 2.89 16 26 N -0.54 -13.83 8.07 -192.84 -1.56 -15.38 16 27 C 0.43 17.36 7.89 132.59 1.05 18.40 16 28 N -0.81 -25.93 8.97 -54.41 -0.49 -26.42 16 29 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 30 H 0.02 1.16 6.00 -2.39 -0.01 1.14 16 31 H 0.01 0.78 8.12 -2.38 -0.02 0.76 16 32 H 0.07 2.71 7.56 -2.39 -0.02 2.69 16 33 H 0.08 3.00 7.79 -2.39 -0.02 2.98 16 34 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 35 H 0.09 2.72 8.03 -2.39 -0.02 2.70 16 36 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.20 9.93 5.34 -2.91 -0.02 9.92 16 40 H 0.13 3.88 7.89 -2.91 -0.02 3.85 16 41 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 43 H 0.20 1.46 8.06 -2.91 -0.02 1.43 16 44 H 0.42 13.29 8.08 -92.71 -0.75 12.54 16 45 H 0.42 11.46 6.84 -92.71 -0.63 10.83 16 Total: -1.00 -69.58 381.55 3.56 -66.02 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -0.33 Total: 44.02 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 7.11 Total: 24.79 kcal Atomic # 7 Polarization: -145.24 SS G_CDS: -5.18 Total: -150.43 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.07 Total: -28.11 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -69.58 3.56 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339930121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.173 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds