Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48491 * 109.47194 * 270.00353 * 3 2 1 5 5 H 1.48498 * 109.46846 * 30.00353 * 3 2 1 6 6 H 1.48500 * 109.47208 * 149.99808 * 3 2 1 7 7 C 1.37882 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00242 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47232 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47364 * 179.97438 * 10 9 7 12 12 C 1.34779 * 120.00169 * 179.97438 * 11 10 9 13 13 O 1.21282 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00037 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47000 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47478 * 180.02562 * 17 16 15 19 19 H 1.09007 * 110.67894 * 54.29471 * 18 17 16 20 20 S 1.83921 * 110.76106 * 291.05218 * 18 17 16 21 21 C 1.83911 * 94.80444 * 207.01128 * 20 18 17 22 22 C 1.54131 * 102.71393 * 34.68573 * 21 20 18 23 23 H 1.09004 * 110.24883 * 211.55749 * 22 21 20 24 24 N 1.47139 * 109.22166 * 90.26506 * 22 21 20 25 25 C 1.33995 * 109.04161 * 239.79612 * 24 22 21 26 26 O 1.21595 * 123.05404 * 179.97438 * 25 24 22 27 27 N 1.34001 * 113.88791 * 0.02562 * 25 24 22 28 28 C 1.47353 * 109.17718 * 359.87118 * 27 25 24 29 29 H 1.09000 * 110.86547 * 241.56939 * 28 27 25 30 30 H 0.97002 * 119.99803 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47396 * 60.00161 * 9 7 2 32 32 H 1.09004 * 109.47103 * 300.00314 * 9 7 2 33 33 H 1.09004 * 109.47694 * 59.99739 * 10 9 7 34 34 H 1.09004 * 109.46785 * 299.99838 * 10 9 7 35 35 H 0.96996 * 119.99986 * 359.97438 * 11 10 9 36 36 H 1.09000 * 109.47247 * 60.00371 * 14 12 11 37 37 H 1.09001 * 109.47358 * 299.99798 * 14 12 11 38 38 H 1.08993 * 109.46955 * 300.00219 * 15 14 12 39 39 H 1.09000 * 109.47050 * 60.00048 * 15 14 12 40 40 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 41 41 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 42 42 H 1.09004 * 109.47107 * 300.00294 * 17 16 15 43 43 H 1.09000 * 109.46866 * 60.00185 * 17 16 15 44 44 H 1.09005 * 110.76468 * 152.99255 * 21 20 18 45 45 H 1.09002 * 110.76732 * 276.19365 * 21 20 18 46 46 H 0.96995 * 125.47528 * 59.76355 * 24 22 21 47 47 H 0.96998 * 125.47601 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1865 -6.0981 -0.0003 13 8 3.3993 -6.0981 -0.0007 14 6 1.4329 -7.4031 -0.0003 15 6 2.4272 -8.5661 -0.0002 16 6 1.6621 -9.8910 0.0005 17 6 2.6563 -11.0541 0.0013 18 6 1.8914 -12.3790 0.0014 19 1 1.1838 -12.4150 -0.8271 20 16 1.0297 -12.6343 1.6061 21 6 1.0470 -14.4702 1.4999 22 6 2.3872 -14.7566 0.7945 23 1 2.3079 -15.6568 0.1850 24 7 3.4426 -14.9183 1.8069 25 6 4.3901 -13.9931 1.6023 26 8 5.3834 -13.8962 2.2968 27 7 4.1428 -13.1838 0.5633 28 6 2.8650 -13.5720 -0.0593 29 1 3.0156 -13.8834 -1.0929 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8902 32 1 0.6246 -2.5570 0.8897 33 1 2.8719 -3.6045 0.8894 34 1 2.8718 -3.6044 -0.8906 35 1 0.5427 -4.9308 0.0008 36 1 0.8060 -7.4608 -0.8901 37 1 0.8066 -7.4610 0.8899 38 1 3.0539 -8.5084 -0.8900 39 1 3.0538 -8.5083 0.8899 40 1 1.0357 -9.9485 0.8906 41 1 1.0352 -9.9491 -0.8893 42 1 3.2831 -10.9969 -0.8886 43 1 3.2829 -10.9958 0.8914 44 1 1.0313 -14.9151 2.4949 45 1 0.2086 -14.8308 0.9039 46 1 3.4509 -15.5867 2.5097 47 1 4.7145 -12.4588 0.2660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345145664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = -77.389952 kcal Electronic energy + Delta-G solvation = -26217.127529 eV Core-core repulsion = 22332.303256 eV Total energy + Delta-G solvation = -3884.824273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80636 -39.28676 -37.63455 -36.26145 -34.86253 -34.05987 -32.85179 -32.64180 -31.17338 -29.69113 -28.07629 -25.90467 -24.62036 -23.26394 -22.40982 -21.28601 -21.09931 -20.84102 -19.84792 -18.64919 -17.33126 -16.78659 -16.69476 -16.44907 -16.20485 -16.16085 -15.64135 -15.24300 -15.01168 -14.77744 -14.48907 -14.39181 -14.02528 -13.73755 -13.51509 -13.27428 -13.07446 -12.87322 -12.82218 -12.31118 -12.20044 -12.02060 -11.45954 -11.34871 -11.25103 -11.19486 -11.02789 -10.80253 -10.64072 -10.63576 -10.54615 -10.32060 -9.78839 -9.77908 -9.54505 -9.44024 -9.15700 -8.52975 -8.33965 -8.19796 -6.09467 -4.12224 1.18791 1.65687 2.26224 2.70914 3.05348 3.29528 3.30551 3.35565 3.39779 3.48386 3.62958 3.73725 4.01465 4.15584 4.37074 4.42472 4.50535 4.60028 4.73812 4.80915 4.87296 4.91263 5.01968 5.11849 5.17889 5.27562 5.30208 5.38777 5.59313 5.63245 5.70352 5.80748 6.11383 6.25371 6.35914 6.36648 6.50420 6.64922 6.74913 6.88863 6.95268 7.51930 7.61844 7.88846 8.04992 8.18137 8.28250 8.69631 8.93846 9.52599 11.02096 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028601 B = 0.001489 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.738125 B =18795.949398 C =19335.127783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.725 5.725 12 C 0.502 3.498 13 O -0.554 6.554 14 C -0.141 4.141 15 C -0.102 4.102 16 C -0.119 4.119 17 C -0.104 4.104 18 C -0.049 4.049 19 H 0.111 0.889 20 S -0.258 6.258 21 C -0.091 4.091 22 C 0.124 3.876 23 H 0.107 0.893 24 N -0.732 5.732 25 C 0.705 3.295 26 O -0.582 6.582 27 N -0.728 5.728 28 C 0.124 3.876 29 H 0.110 0.890 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.397 0.603 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.431 0.569 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -36.207 -2.445 36.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.375 5.375 12 C 0.288 3.712 13 O -0.432 6.432 14 C -0.181 4.181 15 C -0.140 4.140 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.179 4.179 19 H 0.129 0.871 20 S -0.031 6.031 21 C -0.240 4.240 22 C 0.015 3.985 23 H 0.125 0.875 24 N -0.396 5.396 25 C 0.404 3.596 26 O -0.460 6.460 27 N -0.391 5.391 28 C 0.015 3.985 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.132 0.868 45 H 0.123 0.877 46 H 0.273 0.727 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -1.281 -35.236 -1.229 35.280 hybrid contribution 0.222 0.223 -0.734 0.798 sum -1.058 -35.013 -1.962 35.084 Atomic orbital electron populations 1.69956 1.06084 1.26858 1.50409 1.25001 0.94902 0.99418 0.94987 0.86506 0.79850 0.82980 0.78189 1.20561 1.21157 1.19733 1.21064 0.93255 0.90425 1.51315 0.92264 1.19325 0.94216 0.91181 0.97815 1.21703 0.96042 0.81725 1.00682 1.46373 1.10509 1.06703 1.73867 1.20657 0.88319 0.85734 0.76482 1.90667 1.14179 1.87947 1.50454 1.21676 0.99463 0.92882 1.04122 1.21292 0.97376 0.91614 1.03684 1.21634 0.97843 0.93610 1.02555 1.21524 0.98328 0.90696 1.03689 1.24478 0.98364 0.97975 0.97088 0.87105 1.88486 1.78556 1.06360 1.29710 1.24630 0.98814 0.95348 1.05214 1.22407 0.87741 0.98761 0.89550 0.87536 1.45256 1.22444 1.36777 1.35083 1.15889 0.82864 0.79748 0.81092 1.91031 1.29424 1.74457 1.51047 1.45340 1.23705 1.37066 1.32998 1.22527 0.85206 0.92198 0.98528 0.87247 0.92857 0.95960 0.95952 0.92673 0.92675 0.76929 0.89209 0.89196 0.91167 0.91141 0.91363 0.91600 0.90236 0.89994 0.86836 0.87727 0.72681 0.72278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.62 5.56 -60.29 -0.33 -12.96 16 12 C 0.50 8.32 7.83 -10.99 -0.09 8.24 16 13 O -0.55 -11.36 15.98 5.56 0.09 -11.27 16 14 C -0.14 -1.57 5.70 -27.88 -0.16 -1.73 16 15 C -0.10 -1.04 4.50 -26.73 -0.12 -1.16 16 16 C -0.12 -0.86 5.10 -26.73 -0.14 -1.00 16 17 C -0.10 -0.61 3.66 -26.73 -0.10 -0.71 16 18 C -0.05 -0.21 3.22 -26.16 -0.08 -0.30 16 19 H 0.11 0.32 8.14 -51.92 -0.42 -0.11 16 20 S -0.26 -1.74 21.89 -107.50 -2.35 -4.10 16 21 C -0.09 -0.27 7.10 37.75 0.27 0.00 16 22 C 0.12 0.34 4.16 -66.66 -0.28 0.06 16 23 H 0.11 0.03 8.14 -51.93 -0.42 -0.40 16 24 N -0.73 -3.97 5.94 -57.78 -0.34 -4.32 16 25 C 0.71 6.55 8.92 -88.31 -0.79 5.76 16 26 O -0.58 -8.40 18.05 5.28 0.10 -8.30 16 27 N -0.73 -4.56 4.87 -57.65 -0.28 -4.84 16 28 C 0.12 0.42 4.05 -66.56 -0.27 0.15 16 29 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.40 5.92 8.47 -40.82 -0.35 5.57 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.07 0.56 7.43 -51.93 -0.39 0.18 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.64 7.25 -51.93 -0.38 0.26 16 44 H 0.11 0.32 8.07 -51.93 -0.42 -0.09 16 45 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.43 1.74 8.96 -40.82 -0.37 1.37 16 47 H 0.43 2.52 7.96 -40.82 -0.33 2.20 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -37.26 394.03 -11.47 -48.74 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.67 Total: 1.39 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.33 Total: -1.31 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.22 Total: -47.56 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.18 Total: -19.57 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.35 Total: -4.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.26 -11.47 -48.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345145664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.653 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds