Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48499 * 109.47460 * 270.00457 * 3 2 1 5 5 H 1.48504 * 109.47052 * 30.00986 * 3 2 1 6 6 H 1.48501 * 109.46763 * 150.00305 * 3 2 1 7 7 C 1.37874 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47159 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47264 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00172 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99907 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00067 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47258 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47258 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47258 * 180.02562 * 17 16 15 19 19 H 1.09001 * 110.85530 * 51.56658 * 18 17 16 20 20 S 1.84568 * 110.79207 * 288.13628 * 18 17 16 21 21 C 1.86045 * 96.88660 * 247.98905 * 20 18 17 22 22 C 1.52268 * 99.83114 * 24.86886 * 21 20 18 23 23 H 1.09002 * 109.74777 * 69.74196 * 22 21 20 24 24 N 1.44532 * 122.64252 * 201.24668 * 22 21 20 25 25 C 1.36682 * 105.44173 * 146.62814 * 24 22 21 26 26 O 1.21585 * 123.68485 * 165.35479 * 25 24 22 27 27 N 1.36990 * 112.55552 * 345.19360 * 25 24 22 28 28 C 1.43249 * 105.05881 * 346.85322 * 27 25 24 29 29 H 1.09004 * 107.10644 * 282.43101 * 28 27 25 30 30 H 0.96999 * 119.99813 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47763 * 60.00045 * 9 7 2 32 32 H 1.09002 * 109.47228 * 299.99640 * 9 7 2 33 33 H 1.08998 * 109.47217 * 60.00024 * 10 9 7 34 34 H 1.08998 * 109.47214 * 299.99362 * 10 9 7 35 35 H 0.97005 * 120.00208 * 0.02562 * 11 10 9 36 36 H 1.09006 * 109.47352 * 59.99693 * 14 12 11 37 37 H 1.08999 * 109.46982 * 299.99901 * 14 12 11 38 38 H 1.08998 * 109.47217 * 60.00024 * 15 14 12 39 39 H 1.08998 * 109.47214 * 299.99362 * 15 14 12 40 40 H 1.09004 * 109.47386 * 59.99301 * 16 15 14 41 41 H 1.09002 * 109.47184 * 299.99644 * 16 15 14 42 42 H 1.08998 * 109.47217 * 60.00030 * 17 16 15 43 43 H 1.08998 * 109.47214 * 299.99368 * 17 16 15 44 44 H 1.08997 * 111.97051 * 267.07935 * 21 20 18 45 45 H 1.08998 * 110.98235 * 142.27089 * 21 20 18 46 46 H 0.97001 * 127.27677 * 326.35913 * 24 22 21 47 47 H 0.96998 * 127.43409 * 166.63363 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6526 0.7003 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5129 -4.9307 0.0001 12 6 2.1868 -6.0980 0.0007 13 8 3.3996 -6.0980 0.0003 14 6 1.4333 -7.4031 0.0008 15 6 2.4275 -8.5660 0.0009 16 6 1.6625 -9.8910 0.0016 17 6 2.6568 -11.0539 0.0011 18 6 1.8918 -12.3789 0.0011 19 1 1.1492 -12.3983 -0.7965 20 16 1.0996 -12.6780 1.6411 21 6 2.1560 -14.1266 2.1382 22 6 3.3976 -13.8413 1.3042 23 1 3.9111 -12.9634 1.6965 24 7 4.3582 -14.8651 0.9607 25 6 4.8248 -14.5253 -0.2783 26 8 5.8237 -15.0059 -0.7778 27 7 4.0410 -13.5867 -0.8958 28 6 2.8366 -13.5401 -0.1217 29 1 2.2436 -14.4118 -0.3985 30 1 -0.4850 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8720 -3.6043 0.8894 34 1 2.8719 -3.6043 -0.8906 35 1 0.5428 -4.9308 0.0000 36 1 0.8069 -7.4611 -0.8895 37 1 0.8063 -7.4605 0.8905 38 1 3.0541 -8.5082 0.8909 39 1 3.0541 -8.5084 -0.8891 40 1 1.0355 -9.9491 -0.8881 41 1 1.0362 -9.9485 0.8918 42 1 3.2840 -10.9961 0.8906 43 1 3.2827 -10.9964 -0.8894 44 1 1.7023 -15.0773 1.8582 45 1 2.3812 -14.0978 3.2043 46 1 4.6196 -15.6294 1.4977 47 1 4.2569 -13.0646 -1.6842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345145666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = -92.486936 kcal Electronic energy + Delta-G solvation = -26091.062046 eV Core-core repulsion = 22205.583118 eV Total energy + Delta-G solvation = -3885.478928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.62132 -40.65739 -38.66503 -36.98209 -36.44262 -34.80112 -34.49172 -33.86949 -32.09550 -31.26365 -28.90878 -26.86778 -25.37020 -23.91959 -23.00342 -22.88042 -22.13452 -21.67724 -21.11858 -18.77692 -18.56820 -18.31543 -17.79122 -17.68526 -16.96033 -16.84310 -16.61974 -16.40948 -16.28728 -16.01448 -15.52131 -15.23903 -14.99961 -14.94600 -14.56407 -14.32734 -14.07208 -13.82072 -13.35270 -13.23510 -13.15461 -12.97063 -12.76725 -12.57349 -12.50729 -12.23210 -12.11009 -11.94649 -11.86300 -11.75014 -11.65743 -11.51022 -11.46463 -11.02756 -10.75307 -10.60817 -10.58729 -9.97853 -9.84623 -8.76306 -8.24776 -6.35292 0.55806 1.00788 1.41392 1.41673 1.53201 1.66136 1.73851 1.80452 2.31368 2.49050 2.66265 3.08577 3.09803 3.43596 3.57969 3.76302 3.87347 3.96424 4.08696 4.15360 4.25355 4.38062 4.46483 4.48695 4.50778 4.58446 4.61459 4.66723 4.77161 4.82547 4.85512 4.88732 4.97122 5.03872 5.23357 5.32213 5.43183 5.50023 5.55836 5.57959 5.78829 5.87047 5.99704 6.16174 6.31761 6.69682 6.77894 7.34087 7.36177 7.38093 8.86866 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.001469 C = 0.001419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.848127 B =19049.788637 C =19723.987474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.722 5.722 12 C 0.498 3.502 13 O -0.597 6.597 14 C -0.130 4.130 15 C -0.098 4.098 16 C -0.109 4.109 17 C -0.104 4.104 18 C -0.018 4.018 19 H 0.134 0.866 20 S -0.278 6.278 21 C -0.054 4.054 22 C 0.101 3.899 23 H 0.090 0.910 24 N -0.720 5.720 25 C 0.704 3.296 26 O -0.608 6.608 27 N -0.717 5.717 28 C 0.106 3.894 29 H 0.082 0.918 30 H 0.266 0.734 31 H 0.010 0.990 32 H 0.009 0.991 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.411 0.589 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.130 0.870 46 H 0.440 0.560 47 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -34.314 2.708 34.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.373 5.373 12 C 0.287 3.713 13 O -0.479 6.479 14 C -0.170 4.170 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.144 4.144 18 C -0.147 4.147 19 H 0.151 0.849 20 S -0.052 6.052 21 C -0.203 4.203 22 C -0.008 4.008 23 H 0.108 0.892 24 N -0.386 5.386 25 C 0.405 3.595 26 O -0.485 6.485 27 N -0.382 5.382 28 C -0.003 4.003 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.247 0.753 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.137 0.863 45 H 0.148 0.852 46 H 0.285 0.715 47 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -1.281 -33.896 3.025 34.054 hybrid contribution 1.064 0.691 -0.633 1.418 sum -0.216 -33.205 2.392 33.291 Atomic orbital electron populations 1.70054 1.07468 1.27997 1.50917 1.25860 0.95816 1.03040 0.94381 0.85453 0.78599 0.78507 0.78531 1.19744 1.20402 1.19212 1.21478 0.93537 0.92080 1.51662 0.92496 1.19139 0.94234 0.91763 0.96403 1.21171 0.95051 0.82802 0.99439 1.46239 1.11156 1.05717 1.74157 1.21689 0.88076 0.86897 0.74630 1.90648 1.16412 1.88596 1.52203 1.21746 0.99408 0.89294 1.06548 1.21249 0.97173 0.93048 1.02126 1.21539 0.97780 0.91978 1.03378 1.21668 0.97839 0.91619 1.03225 1.23112 0.98783 0.95962 0.96886 0.84859 1.88818 1.50856 1.42451 1.23036 1.24043 0.93139 0.98908 1.04176 1.22571 0.91063 0.91685 0.95433 0.89236 1.45048 1.45777 1.30255 1.17518 1.17553 0.81515 0.79056 0.81394 1.90961 1.28157 1.59560 1.69830 1.44793 1.16768 1.44531 1.32087 1.21559 0.88233 0.99258 0.91239 0.90030 0.92519 0.97211 0.97244 0.93981 0.93903 0.75268 0.86438 0.86763 0.93034 0.92583 0.90181 0.90979 0.91424 0.90259 0.86260 0.85179 0.71530 0.71830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 13.29 21.45 0.28 -53.66 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 6.03 5.61 86.38 0.48 6.51 16 11 N -0.72 -24.28 5.56 -463.06 -2.57 -26.85 16 12 C 0.50 15.72 7.83 87.66 0.69 16.41 16 13 O -0.60 -24.22 15.98 -3.04 -0.05 -24.27 16 14 C -0.13 -2.47 5.70 29.85 0.17 -2.30 16 15 C -0.10 -1.76 4.50 30.59 0.14 -1.62 16 16 C -0.11 -1.18 5.12 30.59 0.16 -1.02 16 17 C -0.10 -0.94 4.56 30.59 0.14 -0.80 16 18 C -0.02 -0.12 3.18 29.69 0.09 -0.02 16 19 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 20 S -0.28 -2.37 22.16 -56.49 -1.25 -3.62 16 21 C -0.05 -0.18 7.31 71.74 0.52 0.34 16 22 C 0.10 0.65 3.51 46.21 0.16 0.81 16 23 H 0.09 0.77 7.45 -2.39 -0.02 0.75 16 24 N -0.72 -6.52 6.55 -452.90 -2.97 -9.49 16 25 C 0.70 11.55 8.81 177.74 1.57 13.11 16 26 O -0.61 -16.01 18.05 -3.98 -0.07 -16.08 16 27 N -0.72 -7.52 6.31 -458.36 -2.89 -10.41 16 28 C 0.11 0.72 2.73 45.79 0.13 0.85 16 29 H 0.08 0.51 7.98 -2.39 -0.02 0.49 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.41 11.51 8.47 -92.70 -0.79 10.73 16 36 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.06 1.15 8.10 -2.39 -0.02 1.14 16 40 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.81 7.58 -2.39 -0.02 0.79 16 42 H 0.07 0.76 7.48 -2.39 -0.02 0.75 16 43 H 0.08 0.68 8.03 -2.39 -0.02 0.66 16 44 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.44 2.41 8.96 -92.71 -0.83 1.58 16 47 H 0.44 3.73 8.96 -92.71 -0.83 2.90 16 Total: -1.00 -77.60 395.86 -3.84 -81.45 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -1.44 Total: 13.47 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.09 Total: 3.85 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -8.15 Total: -100.41 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.12 Total: -40.35 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -1.25 Total: -3.62 kcal Total: -77.60 -3.84 -81.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345145666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.038 kcal (2) G-P(sol) polarization free energy of solvation -77.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds