Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.48535 * 110.99752 * 54.58917 * 10 9 7 12 12 C 1.54320 * 104.67219 * 159.19487 * 11 10 9 13 13 H 1.08999 * 112.55185 * 97.98494 * 12 11 10 14 14 C 1.54164 * 108.86364 * 222.51667 * 12 11 10 15 15 C 1.54840 * 104.32728 * 136.32536 * 14 12 11 16 16 C 1.54848 * 102.73088 * 321.81349 * 15 14 12 17 17 C 1.54161 * 104.32619 * 38.18288 * 16 15 14 18 18 C 1.50702 * 111.79352 * 99.63939 * 17 16 15 19 19 N 1.30972 * 126.44401 * 61.05768 * 18 17 16 20 20 C 1.35212 * 105.58076 * 179.86279 * 19 18 17 21 21 C 1.48466 * 126.41107 * 180.17449 * 20 19 18 22 22 C 1.39410 * 120.09913 * 180.29872 * 21 20 19 23 23 N 1.32004 * 119.87847 * 179.97438 * 22 21 20 24 24 C 1.32200 * 120.08395 * 0.02562 * 23 22 21 25 25 C 1.38474 * 120.19810 * 359.97348 * 24 23 22 26 26 N 1.31988 * 120.12363 * 359.76930 * 25 24 23 27 27 N 1.30730 * 107.17440 * 0.40499 * 20 19 18 28 28 O 1.21284 * 110.10704 * 359.74542 * 27 20 19 29 29 C 1.48527 * 111.00268 * 169.99596 * 10 9 7 30 30 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46948 * 299.99717 * 9 7 2 32 32 H 1.09004 * 109.47662 * 59.99483 * 9 7 2 33 33 H 1.09002 * 110.39554 * 277.99488 * 11 10 9 34 34 H 1.09002 * 110.39391 * 40.39456 * 11 10 9 35 35 H 1.09002 * 110.46309 * 17.60725 * 14 12 11 36 36 H 1.09005 * 110.56755 * 255.08611 * 14 12 11 37 37 H 1.09002 * 110.76003 * 203.50448 * 15 14 12 38 38 H 1.08995 * 110.92030 * 80.19516 * 15 14 12 39 39 H 1.08996 * 110.46168 * 279.46781 * 16 15 14 40 40 H 1.09005 * 110.46001 * 156.89919 * 16 15 14 41 41 H 1.07998 * 120.05995 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.90213 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.93986 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.39720 * 319.60725 * 29 10 9 45 45 H 1.09002 * 110.39399 * 82.00782 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 3.1623 -3.4981 1.1307 12 6 3.7120 -4.9266 1.3278 13 1 4.6771 -5.0737 0.8432 14 6 3.7770 -5.2317 2.8376 15 6 3.2211 -6.6716 2.9618 16 6 2.0758 -6.6862 1.9198 17 6 2.6226 -5.8579 0.7402 18 6 3.1461 -6.7374 -0.3660 19 7 2.4574 -7.6109 -1.0574 20 6 3.3338 -8.1543 -1.9318 21 6 3.0361 -9.1993 -2.9436 22 6 4.0472 -9.6720 -3.7788 23 7 3.7776 -10.6016 -4.6765 24 6 2.5512 -11.0833 -4.7840 25 6 1.5444 -10.6161 -3.9560 26 7 1.8061 -9.6904 -3.0523 27 7 4.4937 -7.5909 -1.7163 28 8 4.4020 -6.7768 -0.8220 29 6 1.5137 -4.9076 0.2414 30 1 -0.4850 -0.8401 0.0004 31 1 0.6242 -2.5567 0.8903 32 1 0.6247 -2.5571 -0.8896 33 1 3.9699 -2.8122 0.8750 34 1 2.6475 -3.1615 2.0306 35 1 3.1530 -4.5329 3.3948 36 1 4.8065 -5.1888 3.1930 37 1 2.8334 -6.8509 3.9646 38 1 3.9845 -7.4067 2.7071 39 1 1.1807 -6.2194 2.3308 40 1 1.8626 -7.7070 1.6023 41 1 5.0491 -9.2785 -3.6916 42 1 2.3339 -11.8434 -5.5197 43 1 0.5441 -11.0128 -4.0472 44 1 0.7434 -4.7897 1.0035 45 1 1.0789 -5.2840 -0.6845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365180042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 125.704578 kcal Electronic energy + Delta-G solvation = -29439.352034 eV Core-core repulsion = 25460.183400 eV Total energy + Delta-G solvation = -3979.168634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.66955 -41.41960 -40.07547 -36.16772 -35.50689 -34.62737 -33.45658 -32.80243 -31.49817 -30.31008 -29.32042 -26.25353 -25.98282 -25.38958 -25.03634 -23.83719 -22.79644 -22.50214 -20.96450 -20.19405 -19.52176 -18.17800 -18.13442 -17.67332 -17.25741 -16.68860 -16.51505 -15.99773 -15.27515 -15.17364 -14.63475 -14.44965 -14.37050 -13.80554 -13.70431 -13.38678 -13.05777 -12.72125 -12.57283 -12.36566 -12.16334 -12.04090 -11.67953 -11.57176 -11.47745 -11.28375 -11.27391 -11.13722 -11.00948 -10.83635 -10.76138 -10.67836 -10.44355 -10.34128 -10.18554 -10.05642 -9.59390 -9.44223 -8.65248 -8.44931 -7.60016 -6.41902 -4.11860 -0.05183 0.61361 1.17310 2.17962 2.62148 2.86426 3.33825 3.41721 3.43123 3.44561 3.62658 3.75016 3.98864 4.15731 4.33938 4.39467 4.50411 4.56393 4.66133 4.78659 4.89499 5.04045 5.05009 5.17180 5.25049 5.26482 5.35312 5.38084 5.44922 5.57062 5.61726 5.74742 5.79888 5.86000 5.94370 5.96335 6.03622 6.04959 6.18205 6.25227 6.46908 6.51936 6.76452 6.84766 7.01584 7.25082 7.49719 7.82428 7.99062 8.19701 8.48770 8.80498 9.59386 10.97675 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.002823 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.705092 B = 9917.450790 C =10977.262962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.594 4.594 8 H 0.058 0.942 9 C 0.173 3.827 10 N -0.506 5.506 11 C 0.058 3.942 12 C -0.093 4.093 13 H 0.093 0.907 14 C -0.118 4.118 15 C -0.126 4.126 16 C -0.107 4.107 17 C 0.022 3.978 18 C 0.233 3.767 19 N -0.453 5.453 20 C 0.209 3.791 21 C 0.157 3.843 22 C 0.088 3.912 23 N -0.433 5.433 24 C 0.059 3.941 25 C 0.058 3.942 26 N -0.400 5.400 27 N -0.367 5.367 28 O 0.095 5.905 29 C 0.047 3.953 30 H 0.267 0.733 31 H -0.014 1.014 32 H 0.023 0.977 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.180 0.820 44 H 0.057 0.943 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 -21.736 -0.075 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.899 3.101 4 H -0.213 1.213 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.076 0.924 9 C 0.047 3.953 10 N -0.230 5.230 11 C -0.070 4.070 12 C -0.113 4.113 13 H 0.111 0.889 14 C -0.156 4.156 15 C -0.163 4.163 16 C -0.146 4.146 17 C 0.019 3.981 18 C 0.013 3.987 19 N -0.184 5.184 20 C -0.062 4.062 21 C 0.017 3.983 22 C -0.073 4.073 23 N -0.147 5.147 24 C -0.102 4.102 25 C -0.104 4.104 26 N -0.116 5.116 27 N -0.072 5.072 28 O 0.032 5.968 29 C -0.082 4.082 30 H 0.078 0.922 31 H 0.003 0.997 32 H 0.041 0.959 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.195 0.805 42 H 0.195 0.805 43 H 0.197 0.803 44 H 0.075 0.925 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.674 -20.487 -1.185 21.579 hybrid contribution -0.433 -1.578 0.616 1.748 sum 6.241 -22.065 -0.568 22.937 Atomic orbital electron populations 1.70797 1.06910 1.30472 1.46588 1.25845 0.96463 1.02738 0.93738 0.83507 0.74849 0.75144 0.76600 1.21346 1.20800 1.21382 1.21969 0.94761 0.90938 1.55622 0.92387 1.19991 0.91110 0.89022 0.95180 1.65483 1.15882 1.01364 1.40225 1.23034 0.96944 0.93380 0.93678 1.22742 0.97669 0.95277 0.95581 0.88881 1.22523 1.01733 0.96440 0.94921 1.22563 0.97473 0.97294 0.98981 1.22570 0.98950 1.00041 0.93020 1.20506 0.97004 0.92132 0.88451 1.28379 0.79972 0.94128 0.96232 1.72081 1.29537 1.09838 1.06980 1.23081 0.86015 0.99163 0.97986 1.18857 0.91243 0.94241 0.94002 1.23732 1.00594 0.92623 0.90350 1.68583 1.21059 1.07962 1.17108 1.24042 0.89173 0.98568 0.98382 1.23916 1.01743 0.93225 0.91476 1.68321 1.18972 1.07031 1.17283 1.74835 1.21799 1.05001 1.05605 1.85285 1.32031 1.43572 1.35953 1.23289 0.93454 0.90735 1.00730 0.92249 0.99659 0.95884 0.89784 0.93233 0.90540 0.90990 0.90864 0.91620 0.89368 0.90695 0.80489 0.80519 0.80319 0.92472 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.43 13.65 55.43 0.76 -26.68 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.59 -16.43 8.58 -34.44 -0.30 -16.73 16 8 H 0.06 1.59 6.63 -52.48 -0.35 1.24 16 9 C 0.17 4.38 4.13 -4.98 -0.02 4.36 16 10 N -0.51 -10.66 5.48 -231.54 -1.27 -11.93 16 11 C 0.06 1.04 5.08 -2.23 -0.01 1.03 16 12 C -0.09 -1.30 3.57 -88.32 -0.31 -1.62 16 13 H 0.09 1.26 7.15 -51.93 -0.37 0.89 16 14 C -0.12 -1.31 6.36 -25.15 -0.16 -1.47 16 15 C -0.13 -1.25 6.90 -24.79 -0.17 -1.42 16 16 C -0.11 -1.26 5.97 -25.15 -0.15 -1.41 16 17 C 0.02 0.32 0.93 -153.36 -0.14 0.18 16 18 C 0.23 3.59 6.65 -12.99 -0.09 3.51 16 19 N -0.45 -7.37 11.55 -9.89 -0.11 -7.49 16 20 C 0.21 3.21 7.92 -156.13 -1.24 1.97 16 21 C 0.16 2.10 6.76 -82.76 -0.56 1.54 16 22 C 0.09 1.00 10.88 -17.04 -0.19 0.81 16 23 N -0.43 -4.46 10.49 -12.78 -0.13 -4.59 16 24 C 0.06 0.44 11.22 -17.31 -0.19 0.25 16 25 C 0.06 0.49 11.22 -17.40 -0.20 0.29 16 26 N -0.40 -5.11 10.44 -9.58 -0.10 -5.21 16 27 N -0.37 -5.56 11.86 30.96 0.37 -5.19 16 28 O 0.09 1.45 10.32 18.03 0.19 1.64 16 29 C 0.05 0.83 5.63 -2.24 -0.01 0.82 16 30 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 31 H -0.01 -0.37 7.74 -51.93 -0.40 -0.77 16 32 H 0.02 0.63 8.01 -51.93 -0.42 0.22 16 33 H 0.08 1.61 7.20 -51.93 -0.37 1.23 16 34 H 0.05 0.92 7.04 -51.93 -0.37 0.56 16 35 H 0.08 0.88 7.18 -51.93 -0.37 0.51 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.00 7.18 -51.93 -0.37 0.63 16 40 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 41 H 0.18 1.77 7.87 -52.49 -0.41 1.36 16 42 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.06 0.97 6.86 -51.93 -0.36 0.62 16 45 H 0.08 1.48 7.87 -51.93 -0.41 1.07 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -33.28 368.62 -9.48 -42.77 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.81 Total: -1.19 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.83 Total: -7.53 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.49 Total: -61.08 kcal Atomic # 8 Polarization: 1.45 SS G_CDS: 0.19 Total: 1.64 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.28 -9.48 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365180042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.470 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds