Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.48535 * 110.99752 * 54.58917 * 10 9 7 12 12 C 1.54320 * 104.67219 * 159.19487 * 11 10 9 13 13 H 1.08999 * 112.55185 * 97.98494 * 12 11 10 14 14 C 1.54164 * 108.86364 * 222.51667 * 12 11 10 15 15 C 1.54840 * 104.32728 * 136.32536 * 14 12 11 16 16 C 1.54848 * 102.73088 * 321.81349 * 15 14 12 17 17 C 1.54161 * 104.32619 * 38.18288 * 16 15 14 18 18 C 1.50702 * 111.79352 * 99.63939 * 17 16 15 19 19 N 1.30972 * 126.44401 * 61.05768 * 18 17 16 20 20 C 1.35212 * 105.58076 * 179.86279 * 19 18 17 21 21 C 1.48466 * 126.41107 * 180.17449 * 20 19 18 22 22 C 1.39410 * 120.09913 * 180.29872 * 21 20 19 23 23 N 1.32004 * 119.87847 * 179.97438 * 22 21 20 24 24 C 1.32200 * 120.08395 * 0.02562 * 23 22 21 25 25 C 1.38474 * 120.19810 * 359.97348 * 24 23 22 26 26 N 1.31988 * 120.12363 * 359.76930 * 25 24 23 27 27 N 1.30730 * 107.17440 * 0.40499 * 20 19 18 28 28 O 1.21284 * 110.10704 * 359.74542 * 27 20 19 29 29 C 1.48527 * 111.00268 * 169.99596 * 10 9 7 30 30 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46948 * 299.99717 * 9 7 2 32 32 H 1.09004 * 109.47662 * 59.99483 * 9 7 2 33 33 H 1.09002 * 110.39554 * 277.99488 * 11 10 9 34 34 H 1.09002 * 110.39391 * 40.39456 * 11 10 9 35 35 H 1.09002 * 110.46309 * 17.60725 * 14 12 11 36 36 H 1.09005 * 110.56755 * 255.08611 * 14 12 11 37 37 H 1.09002 * 110.76003 * 203.50448 * 15 14 12 38 38 H 1.08995 * 110.92030 * 80.19516 * 15 14 12 39 39 H 1.08996 * 110.46168 * 279.46781 * 16 15 14 40 40 H 1.09005 * 110.46001 * 156.89919 * 16 15 14 41 41 H 1.07998 * 120.05995 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.90213 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.93986 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.39720 * 319.60725 * 29 10 9 45 45 H 1.09002 * 110.39399 * 82.00782 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 3.1623 -3.4981 1.1307 12 6 3.7120 -4.9266 1.3278 13 1 4.6771 -5.0737 0.8432 14 6 3.7770 -5.2317 2.8376 15 6 3.2211 -6.6716 2.9618 16 6 2.0758 -6.6862 1.9198 17 6 2.6226 -5.8579 0.7402 18 6 3.1461 -6.7374 -0.3660 19 7 2.4574 -7.6109 -1.0574 20 6 3.3338 -8.1543 -1.9318 21 6 3.0361 -9.1993 -2.9436 22 6 4.0472 -9.6720 -3.7788 23 7 3.7776 -10.6016 -4.6765 24 6 2.5512 -11.0833 -4.7840 25 6 1.5444 -10.6161 -3.9560 26 7 1.8061 -9.6904 -3.0523 27 7 4.4937 -7.5909 -1.7163 28 8 4.4020 -6.7768 -0.8220 29 6 1.5137 -4.9076 0.2414 30 1 -0.4850 -0.8401 0.0004 31 1 0.6242 -2.5567 0.8903 32 1 0.6247 -2.5571 -0.8896 33 1 3.9699 -2.8122 0.8750 34 1 2.6475 -3.1615 2.0306 35 1 3.1530 -4.5329 3.3948 36 1 4.8065 -5.1888 3.1930 37 1 2.8334 -6.8509 3.9646 38 1 3.9845 -7.4067 2.7071 39 1 1.1807 -6.2194 2.3308 40 1 1.8626 -7.7070 1.6023 41 1 5.0491 -9.2785 -3.6916 42 1 2.3339 -11.8434 -5.5197 43 1 0.5441 -11.0128 -4.0472 44 1 0.7434 -4.7897 1.0035 45 1 1.0789 -5.2840 -0.6845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365180042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = 100.528198 kcal Electronic energy + Delta-G solvation = -29440.443763 eV Core-core repulsion = 25460.183400 eV Total energy + Delta-G solvation = -3980.260364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.83503 -42.18973 -41.34854 -37.32732 -37.04155 -35.45798 -34.79960 -34.47735 -32.40956 -31.49983 -30.77514 -27.85520 -27.04606 -26.62446 -25.97875 -25.12670 -24.44994 -23.60098 -22.25347 -21.49258 -20.66142 -19.35930 -19.23440 -18.76842 -18.49493 -18.02499 -17.45206 -17.20758 -16.52751 -16.07041 -15.94249 -15.74885 -15.56183 -15.29249 -15.17870 -14.49186 -14.30001 -14.14971 -13.80559 -13.53019 -13.44598 -13.23771 -13.14685 -12.86390 -12.83821 -12.55799 -12.46238 -12.43525 -12.25736 -12.20265 -12.01922 -11.92200 -11.87354 -11.67541 -11.50353 -11.34437 -10.74284 -10.60917 -10.35952 -10.32664 -9.33876 -8.70759 -6.41539 -0.90366 -0.16074 0.05106 1.09555 1.44900 1.53386 1.61617 1.80847 1.90252 2.37840 2.54963 2.55311 3.03476 3.09522 3.14957 3.17812 3.22507 3.33436 3.44550 3.61936 3.79903 3.99719 4.05911 4.13216 4.22231 4.25449 4.26887 4.32336 4.38296 4.40825 4.55073 4.59741 4.67700 4.71437 4.73565 4.83147 4.91589 5.00749 5.05139 5.14541 5.15752 5.17898 5.24846 5.42618 5.60787 5.90447 6.02117 6.16680 6.33674 6.49838 6.54851 6.82775 7.39492 8.69217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013275 B = 0.002823 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.705092 B = 9917.450790 C =10977.262962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.035 4.035 3 Si 1.119 2.881 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.603 4.603 8 H 0.059 0.941 9 C 0.186 3.814 10 N -0.524 5.524 11 C 0.058 3.942 12 C -0.084 4.084 13 H 0.100 0.900 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.104 4.104 17 C 0.029 3.971 18 C 0.230 3.770 19 N -0.472 5.472 20 C 0.207 3.793 21 C 0.122 3.878 22 C 0.088 3.912 23 N -0.450 5.450 24 C 0.081 3.919 25 C 0.063 3.937 26 N -0.435 5.435 27 N -0.373 5.373 28 O 0.089 5.911 29 C 0.049 3.951 30 H 0.254 0.746 31 H -0.029 1.029 32 H -0.008 1.008 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.181 0.819 42 H 0.226 0.774 43 H 0.219 0.781 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 -23.695 0.209 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.233 4.233 3 Si 0.940 3.060 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.641 4.641 8 H 0.077 0.923 9 C 0.059 3.941 10 N -0.247 5.247 11 C -0.069 4.069 12 C -0.104 4.104 13 H 0.118 0.882 14 C -0.150 4.150 15 C -0.152 4.152 16 C -0.143 4.143 17 C 0.026 3.974 18 C 0.010 3.990 19 N -0.204 5.204 20 C -0.064 4.064 21 C -0.017 4.017 22 C -0.071 4.071 23 N -0.164 5.164 24 C -0.080 4.080 25 C -0.100 4.100 26 N -0.151 5.151 27 N -0.080 5.080 28 O 0.028 5.972 29 C -0.080 4.080 30 H 0.063 0.937 31 H -0.012 1.012 32 H 0.010 0.990 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.198 0.802 42 H 0.242 0.758 43 H 0.236 0.764 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.848 -22.449 -0.866 23.797 hybrid contribution -0.887 -1.146 0.350 1.491 sum 6.962 -23.595 -0.516 24.606 Atomic orbital electron populations 1.70925 1.07992 1.29699 1.48783 1.27397 0.96487 1.06697 0.92689 0.82908 0.74079 0.70929 0.78090 1.19895 1.21001 1.18816 1.22289 0.94973 0.91998 1.54796 0.92293 1.19654 0.91193 0.90313 0.92908 1.65340 1.15705 1.01366 1.42320 1.23042 0.95701 0.96085 0.92120 1.22710 0.97361 0.92065 0.98221 0.88197 1.22509 1.03276 0.97149 0.92085 1.22545 0.96695 0.96516 0.99446 1.22598 0.99925 0.99451 0.92296 1.20500 0.95981 0.91979 0.88972 1.28508 0.80118 0.94140 0.96242 1.72067 1.30211 1.10484 1.07672 1.23553 0.85672 0.99225 0.97984 1.18848 0.92360 0.95369 0.95078 1.23730 1.00346 0.92831 0.90240 1.68676 1.22639 1.08062 1.16983 1.24863 0.87727 0.97697 0.97753 1.24662 1.03722 0.91612 0.89982 1.68256 1.18992 1.08655 1.19221 1.74799 1.21978 1.05416 1.05841 1.85258 1.31971 1.43843 1.36170 1.23244 0.94654 0.89821 1.00256 0.93710 1.01181 0.99045 0.91100 0.93870 0.90822 0.88730 0.88491 0.90693 0.88993 0.90581 0.80223 0.75777 0.76449 0.91999 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.65 21.45 0.29 -57.69 16 2 C -0.04 -2.02 5.46 84.65 0.46 -1.55 16 3 Si 1.12 50.05 29.90 68.60 2.05 52.10 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.60 -34.19 8.58 25.60 0.22 -33.97 16 8 H 0.06 3.27 6.63 -2.91 -0.02 3.25 16 9 C 0.19 9.92 4.13 85.56 0.35 10.28 16 10 N -0.52 -22.96 5.48 -886.45 -4.86 -27.82 16 11 C 0.06 2.14 5.08 86.43 0.44 2.58 16 12 C -0.08 -2.29 3.57 -9.30 -0.03 -2.32 16 13 H 0.10 2.61 7.15 -2.39 -0.02 2.59 16 14 C -0.11 -2.23 6.36 31.62 0.20 -2.03 16 15 C -0.11 -1.95 6.90 31.85 0.22 -1.73 16 16 C -0.10 -2.32 5.97 31.62 0.19 -2.13 16 17 C 0.03 0.82 0.93 -51.44 -0.05 0.77 16 18 C 0.23 7.18 6.65 88.36 0.59 7.76 16 19 N -0.47 -15.74 11.55 -302.56 -3.50 -19.23 16 20 C 0.21 6.52 7.92 137.32 1.09 7.60 16 21 C 0.12 3.28 6.76 42.00 0.28 3.56 16 22 C 0.09 1.97 10.88 84.95 0.92 2.89 16 23 N -0.45 -8.43 10.49 -194.36 -2.04 -10.47 16 24 C 0.08 0.96 11.22 84.69 0.95 1.91 16 25 C 0.06 0.90 11.22 84.73 0.95 1.85 16 26 N -0.43 -10.82 10.44 -184.21 -1.92 -12.74 16 27 N -0.37 -11.54 11.86 -59.20 -0.70 -12.24 16 28 O 0.09 2.75 10.32 74.57 0.77 3.52 16 29 C 0.05 1.80 5.63 86.43 0.49 2.29 16 30 H 0.25 15.94 7.22 -92.71 -0.67 15.27 16 31 H -0.03 -1.62 7.74 -2.39 -0.02 -1.64 16 32 H -0.01 -0.50 8.01 -2.39 -0.02 -0.51 16 33 H 0.07 2.75 7.20 -2.39 -0.02 2.73 16 34 H 0.04 1.63 7.04 -2.39 -0.02 1.61 16 35 H 0.07 1.54 7.18 -2.39 -0.02 1.52 16 36 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.98 7.18 -2.39 -0.02 1.96 16 40 H 0.08 1.70 7.86 -2.38 -0.02 1.68 16 41 H 0.18 3.67 7.87 -2.91 -0.02 3.65 16 42 H 0.23 0.36 8.06 -2.91 -0.02 0.33 16 43 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.06 2.19 6.86 -2.39 -0.02 2.17 16 45 H 0.06 2.46 7.87 -2.39 -0.02 2.44 16 Total: -1.00 -76.11 368.62 -1.50 -77.62 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.13 Total: 9.20 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 7.27 Total: -2.24 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -12.72 Total: -140.20 kcal Atomic # 8 Polarization: 2.75 SS G_CDS: 0.77 Total: 3.52 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -76.11 -1.50 -77.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365180042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.143 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds