Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99679 * 2 1 4 4 H 1.48496 * 109.46968 * 269.99623 * 3 2 1 5 5 H 1.48497 * 109.47279 * 29.99879 * 3 2 1 6 6 H 1.48504 * 109.46842 * 149.99947 * 3 2 1 7 7 C 1.37874 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00312 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00140 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47431 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99938 * 270.00008 * 10 9 7 12 12 C 1.52994 * 109.47562 * 269.99969 * 11 10 9 13 13 C 1.52999 * 117.50000 * 243.62703 * 12 11 10 14 14 C 1.52994 * 117.50368 * 174.99995 * 12 11 10 15 15 C 1.34777 * 119.99936 * 90.00125 * 10 9 7 16 16 O 1.21598 * 119.99932 * 359.97438 * 15 10 9 17 17 N 1.34772 * 119.99869 * 180.02562 * 15 10 9 18 18 C 1.40804 * 120.00214 * 179.97438 * 17 15 10 19 19 C 1.40360 * 126.06811 * 359.97375 * 18 17 15 20 20 N 1.30821 * 108.39062 * 180.02562 * 19 18 17 21 21 N 1.40067 * 108.38839 * 0.02562 * 20 19 18 22 22 C 1.39776 * 126.08430 * 179.97438 * 21 20 19 23 23 C 1.38963 * 119.68705 * 359.74939 * 22 21 20 24 24 C 1.38400 * 119.10969 * 180.28076 * 23 22 21 25 25 C 1.38803 * 118.48175 * 359.97438 * 24 23 22 26 26 C 1.38120 * 119.29904 * 0.02562 * 25 24 23 27 27 N 1.31892 * 120.84038 * 0.02562 * 26 25 24 28 28 C 1.35678 * 126.07621 * 180.28226 * 18 17 15 29 29 H 0.96999 * 120.00581 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.47036 * 59.99943 * 9 7 2 31 31 H 1.09002 * 109.47403 * 300.00391 * 9 7 2 32 32 H 1.09004 * 109.47161 * 30.00325 * 11 10 9 33 33 H 1.09007 * 109.46728 * 149.99593 * 11 10 9 34 34 H 1.09009 * 115.54662 * 29.32850 * 12 11 10 35 35 H 1.08995 * 117.49733 * 359.97438 * 13 12 11 36 36 H 1.09004 * 117.50316 * 145.01641 * 13 12 11 37 37 H 1.08994 * 117.49958 * 214.97691 * 14 12 11 38 38 H 1.09002 * 117.49696 * 0.02562 * 14 12 11 39 39 H 0.97002 * 120.00056 * 359.97438 * 17 15 10 40 40 H 1.08006 * 125.80197 * 0.05566 * 19 18 17 41 41 H 1.08007 * 120.44236 * 0.25430 * 23 22 21 42 42 H 1.07996 * 120.75897 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.35309 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.57678 * 179.97438 * 26 25 24 45 45 H 1.08002 * 126.23836 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.2436 -3.2660 1.2697 12 6 5.6884 -3.0257 1.7121 13 6 6.6118 -4.2424 1.8004 14 6 6.1085 -3.5695 3.0790 15 6 4.2251 -3.2102 -1.1663 16 8 4.0223 -2.6369 -2.2193 17 7 4.6739 -4.4810 -1.1664 18 6 4.9086 -5.1447 -2.3858 19 6 4.7188 -4.6079 -3.6687 20 7 5.0407 -5.5199 -4.5496 21 7 5.4471 -6.6720 -3.8644 22 6 5.8695 -7.8704 -4.4469 23 6 5.9049 -7.9878 -5.8311 24 6 6.3195 -9.1817 -6.3951 25 6 6.6862 -10.2206 -5.5507 26 6 6.6264 -10.0336 -4.1836 27 7 6.2260 -8.8843 -3.6752 28 6 5.3528 -6.4186 -2.5295 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6799 0.8912 31 1 3.8752 -0.6803 -0.8888 32 1 3.5624 -2.8822 2.0292 33 1 4.0767 -4.3353 1.1390 34 1 6.1282 -2.0821 1.3889 35 1 6.1900 -5.2141 1.5438 36 1 7.6594 -4.0995 1.5354 37 1 6.8249 -2.9839 3.6550 38 1 5.3556 -4.0989 3.6631 39 1 4.8352 -4.9385 -0.3263 40 1 4.3672 -3.6111 -3.8908 41 1 5.6124 -7.1586 -6.4583 42 1 6.3577 -9.3020 -7.4676 43 1 7.0141 -11.1655 -5.9585 44 1 6.9102 -10.8390 -3.5224 45 1 5.5896 -7.1061 -1.7309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530945146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 121.566510 kcal Electronic energy + Delta-G solvation = -28648.586852 eV Core-core repulsion = 24669.238778 eV Total energy + Delta-G solvation = -3979.348074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.79356 -41.34408 -40.68166 -38.45961 -36.46747 -35.80363 -34.64323 -34.21469 -33.40641 -31.26998 -30.54710 -29.42709 -27.66792 -25.14175 -24.91352 -24.31009 -23.20401 -22.66313 -22.04896 -21.78611 -20.67922 -19.28788 -19.10588 -19.02899 -17.71851 -17.39837 -16.87138 -16.76391 -16.43594 -16.39394 -16.11740 -15.84312 -15.48524 -15.17188 -15.07111 -14.87031 -14.59279 -14.45613 -14.15238 -13.94329 -13.83005 -13.41524 -13.05678 -12.97316 -12.61359 -12.41445 -12.27823 -12.22774 -12.12261 -11.98637 -11.73330 -11.29945 -11.28967 -11.15378 -10.94315 -10.79260 -10.74107 -10.69260 -9.86921 -9.51330 -8.66767 -8.30131 -6.34669 -0.38119 0.21633 0.97258 0.99419 1.35373 1.40094 1.46183 1.47682 1.67890 2.34095 2.38099 2.79032 2.80010 3.04291 3.09997 3.34770 3.45194 3.81924 3.87031 3.99420 4.00402 4.05765 4.11937 4.13468 4.22782 4.30999 4.38725 4.52770 4.65423 4.75103 4.76203 4.83973 4.85352 4.93208 5.00254 5.08803 5.10784 5.22171 5.30469 5.34448 5.48431 5.51725 5.58761 5.69119 5.92289 6.04313 6.25834 6.31692 6.66712 6.86963 7.00725 7.26674 7.59918 8.86898 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.002654 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.769044 B =10547.258761 C =12038.939492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.277 1.277 6 H -0.236 1.236 7 C -0.532 4.532 8 H 0.028 0.972 9 C 0.243 3.757 10 N -0.604 5.604 11 C 0.140 3.860 12 C -0.191 4.191 13 C -0.170 4.170 14 C -0.158 4.158 15 C 0.702 3.298 16 O -0.617 6.617 17 N -0.644 5.644 18 C 0.027 3.973 19 C 0.057 3.943 20 N -0.291 5.291 21 N -0.328 5.328 22 C 0.344 3.656 23 C -0.185 4.185 24 C -0.047 4.047 25 C -0.175 4.175 26 C 0.125 3.875 27 N -0.527 5.527 28 C 0.043 3.957 29 H 0.267 0.733 30 H 0.053 0.947 31 H 0.023 0.977 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.419 0.581 40 H 0.197 0.803 41 H 0.137 0.863 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.199 0.801 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.584 -22.612 -2.819 30.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.203 1.203 5 H -0.202 1.202 6 H -0.159 1.159 7 C -0.571 4.571 8 H 0.046 0.954 9 C 0.121 3.879 10 N -0.337 5.337 11 C 0.017 3.983 12 C -0.211 4.211 13 C -0.207 4.207 14 C -0.196 4.196 15 C 0.404 3.596 16 O -0.497 6.497 17 N -0.295 5.295 18 C -0.078 4.078 19 C -0.132 4.132 20 N -0.111 5.111 21 N -0.108 5.108 22 C 0.119 3.881 23 C -0.208 4.208 24 C -0.073 4.073 25 C -0.195 4.195 26 C -0.032 4.032 27 N -0.241 5.241 28 C -0.101 4.101 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.258 0.742 40 H 0.214 0.786 41 H 0.154 0.846 42 H 0.191 0.809 43 H 0.199 0.801 44 H 0.216 0.784 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 19.343 -22.239 -3.817 29.720 hybrid contribution -0.587 1.289 0.307 1.450 sum 18.756 -20.950 -3.510 28.337 Atomic orbital electron populations 1.70051 1.08236 1.28224 1.52173 1.25814 0.95618 1.03231 0.93982 0.85740 0.79932 0.78466 0.78949 1.20261 1.20222 1.15936 1.21564 0.91627 0.93135 1.50753 0.95350 1.19256 0.92422 0.78806 0.97435 1.47031 1.67217 1.15232 1.04197 1.21230 0.95120 0.96849 0.85074 1.22706 0.95418 0.99481 1.03472 1.23153 0.99567 0.96185 1.01810 1.23020 1.03491 1.03141 0.89915 1.15915 0.78231 0.81084 0.84399 1.90732 1.60264 1.67281 1.31421 1.41783 1.69080 1.11881 1.06765 1.17639 1.10469 0.92980 0.86699 1.24688 0.98627 0.99994 0.89915 1.77396 1.21093 0.91980 1.20607 1.45411 1.51340 1.09665 1.04344 1.17929 0.96806 0.83817 0.89554 1.21767 1.04640 1.01539 0.92835 1.21944 0.92204 0.90403 1.02766 1.22618 1.01143 1.01721 0.94050 1.23249 0.92511 0.92235 0.95230 1.66869 1.15204 1.01006 1.41033 1.22230 1.04532 0.95700 0.87686 0.92366 0.92930 0.95934 0.89858 0.89561 0.89014 0.87379 0.88410 0.87903 0.87415 0.74174 0.78643 0.84552 0.80856 0.80123 0.78404 0.77082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 2 C 0.01 0.67 5.47 84.65 0.46 1.14 16 3 Si 0.95 44.63 27.47 68.60 1.88 46.52 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 7 C -0.53 -31.31 9.94 25.60 0.25 -31.06 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 9 C 0.24 11.80 4.23 85.63 0.36 12.17 16 10 N -0.60 -24.60 2.46 -844.17 -2.07 -26.68 16 11 C 0.14 4.16 5.45 86.38 0.47 4.63 16 12 C -0.19 -4.55 6.01 -10.80 -0.06 -4.62 16 13 C -0.17 -2.93 10.00 30.59 0.31 -2.63 16 14 C -0.16 -2.74 10.25 30.59 0.31 -2.43 16 15 C 0.70 29.60 8.25 179.06 1.48 31.08 16 16 O -0.62 -31.20 13.07 -4.02 -0.05 -31.25 16 17 N -0.64 -20.81 5.34 -317.68 -1.70 -22.51 16 18 C 0.03 0.89 6.90 37.62 0.26 1.15 16 19 C 0.06 2.12 10.84 85.36 0.93 3.04 16 20 N -0.29 -10.01 11.82 -56.70 -0.67 -10.68 16 21 N -0.33 -9.73 3.81 -191.67 -0.73 -10.46 16 22 C 0.34 8.54 7.55 132.78 1.00 9.54 16 23 C -0.19 -3.77 9.70 22.48 0.22 -3.56 16 24 C -0.05 -0.55 10.17 22.44 0.23 -0.32 16 25 C -0.18 -1.43 10.11 22.38 0.23 -1.20 16 26 C 0.13 1.48 11.18 84.66 0.95 2.43 16 27 N -0.53 -10.79 9.86 -192.82 -1.90 -12.69 16 28 C 0.04 1.17 11.13 83.42 0.93 2.10 16 29 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.05 2.34 7.13 -2.38 -0.02 2.32 16 31 H 0.02 1.17 6.85 -2.39 -0.02 1.16 16 32 H 0.08 2.64 8.07 -2.38 -0.02 2.62 16 33 H 0.09 2.10 6.10 -2.38 -0.01 2.08 16 34 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.11 1.49 7.76 -2.39 -0.02 1.48 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.42 10.33 6.11 -92.71 -0.57 9.76 16 40 H 0.20 8.22 5.91 -2.91 -0.02 8.21 16 41 H 0.14 3.01 7.69 -2.91 -0.02 2.99 16 42 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 43 H 0.18 0.03 8.06 -2.91 -0.02 0.00 16 44 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.21 4.25 8.05 -2.91 -0.02 4.22 16 Total: -1.00 -82.99 382.51 3.78 -79.21 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.41 Total: 27.09 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 8.32 Total: 21.47 kcal Atomic # 7 Polarization: -136.25 SS G_CDS: -6.77 Total: -143.02 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.05 Total: -31.25 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -82.99 3.78 -79.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530945146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.773 kcal (2) G-P(sol) polarization free energy of solvation -82.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds