Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47415 * 270.00128 * 3 2 1 5 5 H 1.48496 * 109.47304 * 30.00202 * 3 2 1 6 6 H 1.48509 * 109.47123 * 150.00217 * 3 2 1 7 7 C 1.37875 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99438 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.53034 * 109.46090 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31269 * 178.62941 * 10 9 7 12 12 N 1.46928 * 108.77680 * 54.63442 * 11 10 9 13 13 C 1.34778 * 120.63111 * 126.36999 * 12 11 10 14 14 O 1.21609 * 119.99719 * 185.22853 * 13 12 11 15 15 N 1.34772 * 120.00014 * 5.22391 * 13 12 11 16 16 C 1.40810 * 119.99709 * 174.87648 * 15 13 12 17 17 C 1.40357 * 126.07067 * 359.97438 * 16 15 13 18 18 N 1.30829 * 108.38808 * 179.71712 * 17 16 15 19 19 N 1.40078 * 108.38560 * 0.44372 * 18 17 16 20 20 C 1.39778 * 126.07776 * 179.81603 * 19 18 17 21 21 C 1.38955 * 119.69088 * 359.68883 * 20 19 18 22 22 C 1.38401 * 119.10614 * 180.02562 * 21 20 19 23 23 C 1.38807 * 118.48634 * 359.97438 * 22 21 20 24 24 C 1.38114 * 119.29340 * 0.28010 * 23 22 21 25 25 N 1.31896 * 120.84348 * 359.40372 * 24 23 22 26 26 C 1.35683 * 126.06536 * 179.97438 * 16 15 13 27 27 C 1.46928 * 118.73620 * 306.64243 * 12 11 10 28 28 C 1.52764 * 109.00416 * 53.31112 * 27 12 11 29 29 H 0.96997 * 120.00253 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46140 * 299.97666 * 9 7 2 31 31 H 1.08998 * 109.50475 * 58.67412 * 10 9 7 32 32 H 1.09007 * 109.52571 * 298.59373 * 10 9 7 33 33 H 1.08995 * 109.59062 * 294.84308 * 11 10 9 34 34 H 1.09006 * 109.70519 * 174.48662 * 11 10 9 35 35 H 0.96999 * 120.00169 * 354.87311 * 15 13 12 36 36 H 1.07994 * 125.80678 * 359.96846 * 17 16 15 37 37 H 1.08003 * 120.44574 * 359.97438 * 21 20 19 38 38 H 1.07999 * 120.75706 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.35315 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.57838 * 179.69729 * 24 23 22 41 41 H 1.08000 * 126.24590 * 0.02932 * 26 16 15 42 42 H 1.09003 * 109.58508 * 173.14172 * 27 12 11 43 43 H 1.08996 * 109.58456 * 293.56561 * 27 12 11 44 44 H 1.09009 * 109.55766 * 185.54843 * 28 27 12 45 45 H 1.08996 * 109.38914 * 65.51834 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9865 0.0340 12 7 0.5225 -5.0087 -1.0830 13 6 0.5124 -6.0344 -1.9573 14 8 -0.2157 -5.9964 -2.9306 15 7 1.3092 -7.1019 -1.7528 16 6 1.2211 -8.2195 -2.6049 17 6 0.3536 -8.3578 -3.6996 18 7 0.5656 -9.5259 -4.2492 19 7 1.5675 -10.1812 -3.5218 20 6 2.0780 -11.4550 -3.7873 21 6 1.5779 -12.1878 -4.8568 22 6 2.0918 -13.4480 -5.1083 23 6 3.0928 -13.9327 -4.2777 24 6 3.5384 -13.1515 -3.2296 25 7 3.0335 -11.9514 -3.0183 26 6 1.9598 -9.3540 -2.5133 27 6 -0.4163 -3.8884 -1.2323 28 6 0.3703 -2.5790 -1.2495 29 1 -0.4850 0.8400 -0.0004 30 1 0.6252 -2.5571 0.8899 31 1 2.8883 -3.5915 0.8771 32 1 2.8563 -3.6194 -0.9026 33 1 0.9372 -5.0713 0.9773 34 1 2.1737 -5.8189 -0.0643 35 1 1.9433 -7.1004 -1.0189 36 1 -0.3637 -7.6230 -4.0340 37 1 0.7981 -11.7797 -5.4828 38 1 1.7231 -14.0404 -5.9326 39 1 3.5156 -14.9120 -4.4468 40 1 4.3136 -13.5261 -2.5775 41 1 2.7199 -9.5632 -1.7751 42 1 -0.9665 -3.9949 -2.1672 43 1 -1.1135 -3.8818 -0.3944 44 1 -0.3223 -1.7373 -1.2607 45 1 0.9978 -2.5455 -2.1400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543827770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 107.407800 kcal Electronic energy + Delta-G solvation = -28332.328365 eV Core-core repulsion = 24352.366323 eV Total energy + Delta-G solvation = -3979.962042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82905 -40.44861 -39.77022 -37.09186 -34.89911 -33.79974 -33.35204 -32.74380 -31.13032 -30.46449 -30.11041 -28.64017 -26.18243 -24.21973 -24.16703 -23.19558 -22.46964 -21.69983 -21.07958 -20.14428 -19.04481 -18.25152 -17.81390 -16.83069 -16.63092 -16.33005 -15.87887 -15.80146 -15.34016 -15.04742 -14.62736 -14.43898 -14.37150 -13.91202 -13.73577 -13.60975 -13.23522 -12.93537 -12.90015 -12.70742 -12.45685 -12.36254 -11.89646 -11.25713 -11.11976 -11.10360 -10.94160 -10.68486 -10.47642 -10.44963 -10.23481 -10.09377 -10.06909 -9.83694 -9.59454 -9.23549 -9.05374 -8.94816 -8.39825 -8.17633 -7.63927 -6.03609 -4.10282 0.34859 0.76851 1.82193 1.85572 2.57164 2.80350 3.28143 3.35463 3.37672 3.40892 3.55024 3.91325 4.08902 4.21536 4.40060 4.46157 4.60545 4.67577 4.88046 4.96069 5.24755 5.26442 5.26814 5.31231 5.39481 5.59876 5.68819 5.74130 5.78391 5.97835 6.02766 6.16063 6.20819 6.37500 6.45944 6.56326 6.69659 6.74354 6.89049 6.92425 7.01563 7.15849 7.19441 7.40794 7.63876 7.68517 7.90557 8.02571 8.12479 8.38126 8.73987 8.92866 9.54990 11.01827 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.001897 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.237909 B =14760.311487 C =15218.559163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.111 3.889 12 N -0.611 5.611 13 C 0.709 3.291 14 O -0.588 6.588 15 N -0.664 5.664 16 C 0.048 3.952 17 C 0.081 3.919 18 N -0.278 5.278 19 N -0.329 5.329 20 C 0.386 3.614 21 C -0.171 4.171 22 C -0.050 4.050 23 C -0.196 4.196 24 C 0.135 3.865 25 N -0.511 5.511 26 C 0.023 3.977 27 C 0.126 3.874 28 C -0.125 4.125 29 H 0.261 0.739 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.407 0.593 36 H 0.219 0.781 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -26.309 -5.094 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.013 4.013 12 N -0.346 5.346 13 C 0.411 3.589 14 O -0.467 6.467 15 N -0.314 5.314 16 C -0.057 4.057 17 C -0.110 4.110 18 N -0.097 5.097 19 N -0.109 5.109 20 C 0.158 3.842 21 C -0.193 4.193 22 C -0.076 4.076 23 C -0.217 4.217 24 C -0.023 4.023 25 N -0.225 5.225 26 C -0.120 4.120 27 C 0.004 3.996 28 C -0.163 4.163 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.235 0.765 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.183 0.817 41 H 0.201 0.799 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.939 -26.373 -5.951 27.322 hybrid contribution 0.925 1.079 0.501 1.507 sum 4.864 -25.294 -5.450 26.328 Atomic orbital electron populations 1.69835 1.05837 1.26530 1.50641 1.24960 0.94870 0.99075 0.95050 0.86617 0.79843 0.83562 0.78094 1.20736 1.21249 1.20012 1.21171 0.92872 0.90570 1.50601 0.92744 1.18625 0.92566 0.91527 0.94207 1.22021 0.98985 0.94146 1.01097 1.21788 0.91127 0.99114 0.89222 1.47471 1.38090 1.21018 1.28062 1.15713 0.80498 0.79663 0.83022 1.90742 1.45602 1.80460 1.29889 1.42178 1.41999 1.14323 1.32875 1.17557 1.01808 0.89265 0.97077 1.24924 0.98991 0.94207 0.92848 1.77484 1.05831 1.07944 1.18392 1.45171 1.30599 1.11480 1.23618 1.17640 0.91452 0.83204 0.91857 1.21632 1.03444 0.95515 0.98727 1.21521 0.93937 0.94090 0.98079 1.22128 0.99764 1.02251 0.97558 1.22522 0.96868 0.87566 0.95372 1.66891 1.10838 1.15382 1.29406 1.21887 1.03160 0.90439 0.96523 1.21761 0.90836 0.85394 1.01559 1.21965 1.00188 0.94881 0.99294 0.92918 0.95397 0.91970 0.92793 0.91491 0.92305 0.75447 0.76450 0.83348 0.83943 0.84176 0.81749 0.79945 0.90254 0.92249 0.87680 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.51 -13.43 8.56 -34.44 -0.29 -13.72 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.13 2.07 -91.74 -0.19 0.94 16 10 C -0.12 -2.29 5.30 -26.62 -0.14 -2.44 16 11 C 0.11 1.66 6.39 -3.71 -0.02 1.64 16 12 N -0.61 -10.51 2.98 -178.75 -0.53 -11.04 16 13 C 0.71 12.14 8.27 -86.92 -0.72 11.42 16 14 O -0.59 -11.48 12.94 5.27 0.07 -11.41 16 15 N -0.66 -9.14 5.38 -14.38 -0.08 -9.22 16 16 C 0.05 0.67 6.90 -83.85 -0.58 0.09 16 17 C 0.08 1.21 10.84 -17.18 -0.19 1.02 16 18 N -0.28 -4.01 11.83 30.72 0.36 -3.65 16 19 N -0.33 -4.37 3.81 -11.93 -0.05 -4.42 16 20 C 0.39 4.50 7.55 -154.39 -1.17 3.33 16 21 C -0.17 -1.61 9.70 -39.26 -0.38 -1.99 16 22 C -0.05 -0.32 10.17 -39.31 -0.40 -0.72 16 23 C -0.20 -1.09 10.11 -39.42 -0.40 -1.49 16 24 C 0.13 0.95 11.18 -17.57 -0.20 0.75 16 25 N -0.51 -5.35 9.86 -12.30 -0.12 -5.47 16 26 C 0.02 0.29 11.13 -16.52 -0.18 0.10 16 27 C 0.13 2.42 6.41 -3.93 -0.03 2.40 16 28 C -0.12 -2.80 5.14 -26.83 -0.14 -2.94 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.68 5.64 -51.93 -0.29 0.39 16 35 H 0.41 4.49 6.31 -40.82 -0.26 4.23 16 36 H 0.22 3.43 5.93 -52.49 -0.31 3.11 16 37 H 0.15 1.39 7.69 -52.48 -0.40 0.99 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 39 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.18 1.82 8.05 -52.49 -0.42 1.40 16 42 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.11 2.65 6.03 -51.92 -0.31 2.33 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -31.38 369.70 -9.99 -41.37 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.71 Total: 6.32 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -5.11 Total: -0.05 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.21 Total: -57.54 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.38 -9.99 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543827770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.782 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds