Wall clock time and date at job start Sat Apr 11 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47415 * 270.00128 * 3 2 1 5 5 H 1.48496 * 109.47304 * 30.00202 * 3 2 1 6 6 H 1.48509 * 109.47123 * 150.00217 * 3 2 1 7 7 C 1.37875 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99438 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.53034 * 109.46090 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31269 * 178.62941 * 10 9 7 12 12 N 1.46928 * 108.77680 * 54.63442 * 11 10 9 13 13 C 1.34778 * 120.63111 * 126.36999 * 12 11 10 14 14 O 1.21609 * 119.99719 * 185.22853 * 13 12 11 15 15 N 1.34772 * 120.00014 * 5.22391 * 13 12 11 16 16 C 1.40810 * 119.99709 * 174.87648 * 15 13 12 17 17 C 1.40357 * 126.07067 * 359.97438 * 16 15 13 18 18 N 1.30829 * 108.38808 * 179.71712 * 17 16 15 19 19 N 1.40078 * 108.38560 * 0.44372 * 18 17 16 20 20 C 1.39778 * 126.07776 * 179.81603 * 19 18 17 21 21 C 1.38955 * 119.69088 * 359.68883 * 20 19 18 22 22 C 1.38401 * 119.10614 * 180.02562 * 21 20 19 23 23 C 1.38807 * 118.48634 * 359.97438 * 22 21 20 24 24 C 1.38114 * 119.29340 * 0.28010 * 23 22 21 25 25 N 1.31896 * 120.84348 * 359.40372 * 24 23 22 26 26 C 1.35683 * 126.06536 * 179.97438 * 16 15 13 27 27 C 1.46928 * 118.73620 * 306.64243 * 12 11 10 28 28 C 1.52764 * 109.00416 * 53.31112 * 27 12 11 29 29 H 0.96997 * 120.00253 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46140 * 299.97666 * 9 7 2 31 31 H 1.08998 * 109.50475 * 58.67412 * 10 9 7 32 32 H 1.09007 * 109.52571 * 298.59373 * 10 9 7 33 33 H 1.08995 * 109.59062 * 294.84308 * 11 10 9 34 34 H 1.09006 * 109.70519 * 174.48662 * 11 10 9 35 35 H 0.96999 * 120.00169 * 354.87311 * 15 13 12 36 36 H 1.07994 * 125.80678 * 359.96846 * 17 16 15 37 37 H 1.08003 * 120.44574 * 359.97438 * 21 20 19 38 38 H 1.07999 * 120.75706 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.35315 * 180.02562 * 23 22 21 40 40 H 1.08006 * 119.57838 * 179.69729 * 24 23 22 41 41 H 1.08000 * 126.24590 * 0.02932 * 26 16 15 42 42 H 1.09003 * 109.58508 * 173.14172 * 27 12 11 43 43 H 1.08996 * 109.58456 * 293.56561 * 27 12 11 44 44 H 1.09009 * 109.55766 * 185.54843 * 28 27 12 45 45 H 1.08996 * 109.38914 * 65.51834 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9865 0.0340 12 7 0.5225 -5.0087 -1.0830 13 6 0.5124 -6.0344 -1.9573 14 8 -0.2157 -5.9964 -2.9306 15 7 1.3092 -7.1019 -1.7528 16 6 1.2211 -8.2195 -2.6049 17 6 0.3536 -8.3578 -3.6996 18 7 0.5656 -9.5259 -4.2492 19 7 1.5675 -10.1812 -3.5218 20 6 2.0780 -11.4550 -3.7873 21 6 1.5779 -12.1878 -4.8568 22 6 2.0918 -13.4480 -5.1083 23 6 3.0928 -13.9327 -4.2777 24 6 3.5384 -13.1515 -3.2296 25 7 3.0335 -11.9514 -3.0183 26 6 1.9598 -9.3540 -2.5133 27 6 -0.4163 -3.8884 -1.2323 28 6 0.3703 -2.5790 -1.2495 29 1 -0.4850 0.8400 -0.0004 30 1 0.6252 -2.5571 0.8899 31 1 2.8883 -3.5915 0.8771 32 1 2.8563 -3.6194 -0.9026 33 1 0.9372 -5.0713 0.9773 34 1 2.1737 -5.8189 -0.0643 35 1 1.9433 -7.1004 -1.0189 36 1 -0.3637 -7.6230 -4.0340 37 1 0.7981 -11.7797 -5.4828 38 1 1.7231 -14.0404 -5.9326 39 1 3.5156 -14.9120 -4.4468 40 1 4.3136 -13.5261 -2.5775 41 1 2.7199 -9.5632 -1.7751 42 1 -0.9665 -3.9949 -2.1672 43 1 -1.1135 -3.8818 -0.3944 44 1 -0.3223 -1.7373 -1.2607 45 1 0.9978 -2.5455 -2.1400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543827770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:11 Heat of formation + Delta-G solvation = 89.543277 kcal Electronic energy + Delta-G solvation = -28333.103029 eV Core-core repulsion = 24352.366323 eV Total energy + Delta-G solvation = -3980.736705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.81002 -41.46208 -40.75056 -38.59633 -36.08172 -35.38217 -34.33836 -33.44961 -32.84479 -31.84559 -31.10406 -29.66519 -27.91218 -25.17221 -24.94656 -24.58823 -23.94022 -22.74584 -22.22191 -21.39685 -20.40961 -19.27447 -19.15159 -18.28642 -17.59714 -17.38010 -16.92305 -16.61369 -16.56839 -16.41991 -16.13423 -15.60297 -15.28592 -15.02852 -14.88677 -14.78920 -14.53440 -14.26160 -14.14871 -13.96371 -13.89656 -13.39522 -13.00018 -12.97944 -12.81449 -12.47379 -12.24463 -12.15497 -12.11683 -11.91566 -11.40640 -11.31686 -11.27658 -10.94701 -10.92463 -10.77183 -10.69856 -10.38905 -9.89252 -9.58452 -8.69964 -8.05844 -6.19207 -0.38215 0.21071 0.96042 0.97700 1.41774 1.43012 1.44092 1.52362 1.57635 2.26912 2.45142 2.79445 2.81386 3.20969 3.32516 3.44937 3.84165 3.99015 4.04713 4.06395 4.11820 4.20029 4.32876 4.34619 4.39471 4.50996 4.56782 4.61852 4.73974 4.76051 4.91213 4.97730 5.00206 5.09169 5.21417 5.21878 5.25108 5.47854 5.50203 5.51210 5.65462 5.67805 5.92380 6.01591 6.03371 6.14943 6.27197 6.40952 6.85058 6.89747 6.92397 7.44208 7.48757 8.97393 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.001897 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.237909 B =14760.311487 C =15218.559163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.114 3.886 12 N -0.614 5.614 13 C 0.706 3.294 14 O -0.617 6.617 15 N -0.645 5.645 16 C 0.025 3.975 17 C 0.061 3.939 18 N -0.292 5.292 19 N -0.329 5.329 20 C 0.344 3.656 21 C -0.183 4.183 22 C -0.048 4.048 23 C -0.176 4.176 24 C 0.125 3.875 25 N -0.529 5.529 26 C 0.044 3.956 27 C 0.139 3.861 28 C -0.113 4.113 29 H 0.260 0.740 30 H 0.007 0.993 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.422 0.578 36 H 0.204 0.796 37 H 0.139 0.861 38 H 0.174 0.826 39 H 0.180 0.820 40 H 0.197 0.803 41 H 0.210 0.790 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -29.804 -4.615 30.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.155 4.155 11 C -0.008 4.008 12 N -0.349 5.349 13 C 0.408 3.592 14 O -0.498 6.498 15 N -0.297 5.297 16 C -0.080 4.080 17 C -0.128 4.128 18 N -0.112 5.112 19 N -0.109 5.109 20 C 0.118 3.882 21 C -0.206 4.206 22 C -0.074 4.074 23 C -0.196 4.196 24 C -0.033 4.033 25 N -0.243 5.243 26 C -0.101 4.101 27 C 0.016 3.984 28 C -0.152 4.152 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.263 0.737 36 H 0.220 0.780 37 H 0.157 0.843 38 H 0.192 0.808 39 H 0.198 0.802 40 H 0.214 0.786 41 H 0.227 0.773 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.361 -29.922 -5.466 31.076 hybrid contribution 0.291 1.911 0.287 1.954 sum 6.652 -28.012 -5.179 29.253 Atomic orbital electron populations 1.69968 1.06959 1.27017 1.51442 1.25685 0.95649 1.02147 0.95072 0.85707 0.78921 0.80006 0.77893 1.20796 1.21049 1.19220 1.21591 0.93049 0.92208 1.50107 0.92986 1.18612 0.93158 0.92479 0.93157 1.21873 0.98162 0.94179 1.01280 1.21894 0.91245 0.98576 0.89059 1.47375 1.38241 1.20504 1.28814 1.15799 0.80684 0.80190 0.82496 1.90737 1.46905 1.81112 1.31071 1.41835 1.41431 1.13301 1.33114 1.17593 1.02887 0.89967 0.97566 1.24724 0.99695 0.94466 0.93953 1.77412 1.06787 1.07954 1.19008 1.45416 1.29969 1.12210 1.23265 1.17930 0.93375 0.83126 0.93729 1.21764 1.03653 0.96832 0.98333 1.21952 0.93607 0.92917 0.98877 1.22615 0.98031 1.03234 0.95686 1.23224 0.97147 0.86615 0.96305 1.66872 1.10773 1.16978 1.29645 1.22276 1.02342 0.89353 0.96096 1.21401 0.90784 0.84695 1.01478 1.21716 0.99419 0.95723 0.98312 0.93097 0.97509 0.90619 0.93665 0.90058 0.87999 0.73714 0.77991 0.84319 0.80843 0.80232 0.78584 0.77310 0.90979 0.91674 0.90813 0.96153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.56 11.31 21.45 0.24 -51.32 16 2 C 0.01 0.71 5.30 84.65 0.45 1.16 16 3 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.53 -28.21 8.56 25.60 0.22 -27.99 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.04 2.08 2.07 -11.52 -0.02 2.06 16 10 C -0.12 -4.20 5.30 30.67 0.16 -4.03 16 11 C 0.11 3.20 6.39 86.36 0.55 3.75 16 12 N -0.61 -20.80 2.98 -837.70 -2.50 -23.30 16 13 C 0.71 24.02 8.27 179.06 1.48 25.50 16 14 O -0.62 -24.82 12.94 -4.06 -0.05 -24.87 16 15 N -0.65 -16.98 5.38 -317.67 -1.71 -18.69 16 16 C 0.02 0.68 6.90 37.62 0.26 0.94 16 17 C 0.06 1.89 10.84 85.36 0.93 2.82 16 18 N -0.29 -8.69 11.83 -56.71 -0.67 -9.36 16 19 N -0.33 -8.63 3.81 -191.66 -0.73 -9.36 16 20 C 0.34 7.66 7.55 132.78 1.00 8.66 16 21 C -0.18 -3.27 9.70 22.48 0.22 -3.05 16 22 C -0.05 -0.46 10.17 22.44 0.23 -0.23 16 23 C -0.18 -1.18 10.11 22.38 0.23 -0.95 16 24 C 0.12 1.31 11.18 84.65 0.95 2.25 16 25 N -0.53 -9.90 9.86 -192.82 -1.90 -11.80 16 26 C 0.04 1.04 11.13 83.42 0.93 1.96 16 27 C 0.14 5.49 6.41 86.22 0.55 6.04 16 28 C -0.11 -5.27 5.14 30.53 0.16 -5.11 16 29 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 1.99 5.64 -2.38 -0.01 1.97 16 35 H 0.42 8.14 6.31 -92.71 -0.59 7.56 16 36 H 0.20 6.86 5.93 -2.91 -0.02 6.85 16 37 H 0.14 2.64 7.69 -2.91 -0.02 2.62 16 38 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 39 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 40 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 41 H 0.21 3.63 8.05 -2.91 -0.02 3.61 16 42 H 0.07 2.94 6.99 -2.39 -0.02 2.92 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.07 3.91 6.03 -2.38 -0.01 3.90 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -72.02 369.70 3.44 -68.59 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.45 Total: 21.21 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 8.28 Total: 13.78 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -7.27 Total: -123.83 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.05 Total: -24.87 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -72.02 3.44 -68.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543827770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.128 kcal (2) G-P(sol) polarization free energy of solvation -72.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds