Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47159 * 300.00199 * 3 2 1 6 6 H 1.48495 * 109.47220 * 60.00060 * 3 2 1 7 7 C 1.37876 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00143 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46794 * 180.02562 * 9 7 2 11 11 C 1.53353 * 109.41996 * 295.12345 * 10 9 7 12 12 C 1.53191 * 109.14790 * 178.67253 * 11 10 9 13 13 N 1.46930 * 108.89115 * 54.58503 * 12 11 10 14 14 C 1.34776 * 120.63194 * 126.29264 * 13 12 11 15 15 O 1.21518 * 119.99946 * 354.09189 * 14 13 12 16 16 C 1.48151 * 120.00089 * 174.09007 * 14 13 12 17 17 C 1.39944 * 120.89379 * 319.15794 * 16 14 13 18 18 C 1.38058 * 119.13602 * 179.97438 * 17 16 14 19 19 N 1.31842 * 120.98399 * 359.97438 * 18 17 16 20 20 C 1.32235 * 121.96839 * 0.02562 * 19 18 17 21 21 N 1.39873 * 119.62233 * 180.02562 * 20 19 18 22 22 C 1.34805 * 126.84065 * 359.71284 * 21 20 19 23 23 N 1.30828 * 108.01318 * 179.89093 * 22 21 20 24 24 C 1.33290 * 109.84721 * 0.37989 * 23 22 21 25 25 N 1.30722 * 109.01474 * 359.76632 * 24 23 22 26 26 C 1.38903 * 120.75286 * 359.74567 * 20 19 18 27 27 C 1.46927 * 118.73504 * 306.31638 * 13 12 11 28 28 C 1.53043 * 109.46051 * 175.00149 * 10 9 7 29 29 H 0.96998 * 119.99550 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46923 * 59.99989 * 9 7 2 31 31 H 1.09002 * 109.46867 * 299.99955 * 9 7 2 32 32 H 1.08995 * 109.46045 * 55.02705 * 10 9 7 33 33 H 1.09008 * 109.67866 * 58.71481 * 11 10 9 34 34 H 1.08998 * 109.47356 * 298.51522 * 11 10 9 35 35 H 1.08991 * 109.59367 * 294.72435 * 12 11 10 36 36 H 1.09004 * 109.58332 * 174.43345 * 12 11 10 37 37 H 1.07999 * 120.43041 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.51160 * 180.02562 * 18 17 16 39 39 H 1.07991 * 125.99530 * 0.03426 * 22 21 20 40 40 H 1.07995 * 125.49207 * 179.76179 * 24 23 22 41 41 H 1.08006 * 120.52337 * 180.28552 * 26 20 19 42 42 H 1.08997 * 109.58102 * 173.39678 * 27 13 12 43 43 H 1.08997 * 109.58437 * 293.67622 * 27 13 12 44 44 H 1.08997 * 109.49927 * 61.42870 * 28 10 9 45 45 H 1.09013 * 109.51804 * 301.35592 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 3.0433 -3.6506 -1.3100 12 6 4.0593 -4.7969 -1.2893 13 7 3.3504 -6.0562 -1.0239 14 6 3.4915 -7.1111 -1.8507 15 8 4.1230 -6.9943 -2.8824 16 6 2.8767 -8.4132 -1.5019 17 6 2.9072 -8.8931 -0.1877 18 6 2.3225 -10.1109 0.0969 19 7 1.7397 -10.8215 -0.8484 20 6 1.6870 -10.4078 -2.1033 21 7 1.0556 -11.2011 -3.0669 22 6 0.4680 -12.3982 -2.8696 23 7 -0.0058 -12.8103 -4.0173 24 6 0.2644 -11.9144 -4.9664 25 7 0.9128 -10.9120 -4.4338 26 6 2.2464 -9.1917 -2.4744 27 6 2.4843 -6.1434 0.1598 28 6 1.4840 -4.9838 0.1252 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.9289 -3.5553 0.8416 33 1 3.5685 -2.7008 -1.4115 34 1 2.3630 -3.7825 -2.1513 35 1 4.7948 -4.6193 -0.5048 36 1 4.5619 -4.8571 -2.2546 37 1 3.3818 -8.3182 0.5937 38 1 2.3421 -10.4868 1.1092 39 1 0.3984 -12.9236 -1.9287 40 1 -0.0082 -12.0025 -6.0077 41 1 2.1972 -8.8553 -3.4995 42 1 1.9458 -7.0910 0.1494 43 1 3.0917 -6.0781 1.0625 44 1 0.8182 -5.1029 -0.7296 45 1 0.8984 -4.9808 1.0447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567949158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = 81.932254 kcal Electronic energy + Delta-G solvation = -28669.237614 eV Core-core repulsion = 24688.170870 eV Total energy + Delta-G solvation = -3981.066744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.47629 -42.02599 -40.63183 -38.78241 -35.97625 -35.41809 -34.30873 -33.74220 -32.46100 -32.05308 -31.08647 -29.94094 -26.98042 -25.87704 -25.60013 -24.10195 -23.89673 -22.93064 -22.66910 -21.53040 -20.55614 -19.38724 -18.47495 -18.37079 -17.44062 -17.22001 -17.02775 -17.00155 -16.54870 -16.37113 -16.14662 -15.45369 -15.31189 -15.15856 -15.02602 -14.92129 -14.63286 -14.55722 -14.26142 -13.93431 -13.58373 -13.36848 -13.20331 -13.02045 -12.74601 -12.53872 -12.34500 -12.19658 -12.09248 -11.80632 -11.59671 -11.35612 -11.34470 -11.18120 -11.09050 -11.06755 -10.96629 -10.68598 -10.53308 -9.79791 -9.74262 -8.17841 -6.26641 -0.72238 -0.38091 0.70152 0.78059 1.39111 1.40870 1.45441 1.52362 1.76426 1.80849 2.41451 2.52575 2.94069 3.16298 3.16484 3.31564 3.35451 3.65924 3.76998 3.86105 3.94281 4.01545 4.06350 4.15838 4.20260 4.39220 4.44106 4.49924 4.52615 4.64940 4.77123 4.81263 4.86210 4.94006 4.98186 5.07047 5.15034 5.26448 5.28911 5.31789 5.37489 5.51515 5.56570 5.73431 5.80115 5.89830 6.21357 6.28957 6.38704 6.85611 6.87794 6.90996 7.42230 8.94116 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.002178 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.279310 B =12853.607754 C =13118.015540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.066 0.934 9 C 0.031 3.969 10 C -0.072 4.072 11 C -0.113 4.113 12 C 0.118 3.882 13 N -0.592 5.592 14 C 0.555 3.445 15 O -0.574 6.574 16 C -0.065 4.065 17 C -0.133 4.133 18 C 0.150 3.850 19 N -0.488 5.488 20 C 0.348 3.652 21 N -0.345 5.345 22 C 0.296 3.704 23 N -0.559 5.559 24 C 0.217 3.783 25 N -0.346 5.346 26 C -0.128 4.128 27 C 0.102 3.898 28 C -0.128 4.128 29 H 0.260 0.740 30 H -0.021 1.021 31 H -0.006 1.006 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.188 0.812 38 H 0.229 0.771 39 H 0.259 0.741 40 H 0.258 0.742 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.040 0.960 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -25.801 3.177 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.084 0.916 9 C -0.006 4.006 10 C -0.091 4.091 11 C -0.151 4.151 12 C -0.004 4.004 13 N -0.323 5.323 14 C 0.343 3.657 15 O -0.454 6.454 16 C -0.077 4.077 17 C -0.154 4.154 18 C -0.008 4.008 19 N -0.201 5.201 20 C 0.122 3.878 21 N -0.130 5.130 22 C 0.001 3.999 23 N -0.285 5.285 24 C -0.085 4.085 25 N -0.172 5.172 26 C -0.151 4.151 27 C -0.019 4.019 28 C -0.166 4.166 29 H 0.069 0.931 30 H -0.003 1.003 31 H 0.012 0.988 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.205 0.795 38 H 0.246 0.754 39 H 0.275 0.725 40 H 0.274 0.726 41 H 0.147 0.853 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.059 0.941 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.236 -26.070 2.374 26.696 hybrid contribution 0.149 2.303 -0.784 2.438 sum 5.384 -23.766 1.589 24.420 Atomic orbital electron populations 1.70110 1.07805 1.27379 1.52491 1.25947 0.95644 1.03223 0.95318 0.85507 0.79407 0.79394 0.77410 1.18221 1.21198 1.20595 1.21720 0.93606 0.91963 1.49018 0.91613 1.19036 0.94104 0.93184 0.94276 1.21107 0.97012 0.94020 0.96960 1.21828 0.97671 0.98019 0.97563 1.21710 0.94282 0.81509 1.02915 1.48146 1.45811 1.11942 1.26363 1.18500 0.80159 0.84318 0.82738 1.90783 1.44097 1.84685 1.25876 1.20114 0.97956 0.94286 0.95305 1.22928 0.99334 0.98193 0.94934 1.23438 0.89409 0.89004 0.98942 1.66857 1.18839 1.36092 0.98361 1.17504 0.95000 0.88456 0.86865 1.47573 1.42651 1.16556 1.06244 1.27082 0.88527 0.83842 1.00430 1.70777 1.27060 1.31369 0.99262 1.26997 0.92970 0.86277 1.02247 1.78249 1.25914 1.25916 0.87102 1.21482 0.98819 0.93670 1.01164 1.22386 0.92320 0.99752 0.87470 1.21969 0.97947 0.94391 1.02263 0.93093 1.00298 0.98813 0.90816 0.91061 0.94797 0.88542 0.90497 0.79479 0.75438 0.72544 0.72648 0.85292 0.87382 0.87042 0.94106 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.52 -28.19 8.39 25.60 0.21 -27.98 16 8 H 0.07 3.34 7.06 -2.91 -0.02 3.32 16 9 C 0.03 1.53 4.45 29.85 0.13 1.67 16 10 C -0.07 -2.57 2.10 -10.66 -0.02 -2.59 16 11 C -0.11 -3.91 5.21 30.78 0.16 -3.75 16 12 C 0.12 3.23 6.43 86.36 0.56 3.78 16 13 N -0.59 -14.46 2.97 -821.99 -2.44 -16.90 16 14 C 0.55 15.14 7.36 86.88 0.64 15.77 16 15 O -0.57 -20.63 16.38 -3.77 -0.06 -20.69 16 16 C -0.07 -1.35 5.11 -19.90 -0.10 -1.45 16 17 C -0.13 -1.43 7.51 22.64 0.17 -1.26 16 18 C 0.15 1.20 11.17 84.65 0.95 2.15 16 19 N -0.49 -7.13 9.87 -192.92 -1.90 -9.03 16 20 C 0.35 7.24 7.56 132.76 1.00 8.24 16 21 N -0.34 -7.53 3.81 -196.16 -0.75 -8.28 16 22 C 0.30 5.12 12.26 180.24 2.21 7.32 16 23 N -0.56 -10.93 11.19 -203.69 -2.28 -13.21 16 24 C 0.22 4.08 13.03 180.75 2.35 6.43 16 25 N -0.35 -8.37 12.02 -61.21 -0.74 -9.10 16 26 C -0.13 -3.07 9.38 22.76 0.21 -2.86 16 27 C 0.10 1.86 4.97 86.36 0.43 2.29 16 28 C -0.13 -3.51 5.36 30.67 0.16 -3.35 16 29 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 30 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 2.67 6.93 -2.38 -0.02 2.65 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.08 2.32 7.00 -2.38 -0.02 2.30 16 37 H 0.19 0.82 6.74 -2.91 -0.02 0.80 16 38 H 0.23 -0.43 8.06 -2.91 -0.02 -0.46 16 39 H 0.26 2.37 8.06 -2.92 -0.02 2.34 16 40 H 0.26 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.13 3.76 7.73 -2.91 -0.02 3.73 16 42 H 0.11 1.47 4.79 -2.39 -0.01 1.46 16 43 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -80.36 373.98 4.69 -75.67 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.02 Total: 7.53 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 9.53 Total: 4.64 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -7.82 Total: -112.61 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -80.36 4.69 -75.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567949158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.606 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds