Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00418 * 2 1 4 4 H 1.48501 * 109.46998 * 239.99902 * 3 2 1 5 5 H 1.48499 * 109.46912 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47360 * 120.00016 * 3 2 1 7 7 C 1.37876 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00370 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99868 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52721 * 300.07559 * 9 7 2 11 11 C 1.53048 * 109.49525 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53547 * 178.68416 * 11 9 7 13 13 C 1.53190 * 109.31400 * 61.36475 * 12 11 9 14 14 N 1.46927 * 108.77339 * 305.36187 * 13 12 11 15 15 C 1.34777 * 120.63303 * 233.58411 * 14 13 12 16 16 O 1.21597 * 120.00280 * 185.03521 * 15 14 13 17 17 N 1.34780 * 119.99934 * 5.03653 * 15 14 13 18 18 C 1.40805 * 120.00155 * 174.79206 * 17 15 14 19 19 C 1.40357 * 126.06984 * 359.97324 * 18 17 15 20 20 N 1.30830 * 108.39048 * 179.77958 * 19 18 17 21 21 N 1.40077 * 108.38040 * 0.38002 * 20 19 18 22 22 C 1.39776 * 126.07074 * 179.88049 * 21 20 19 23 23 C 1.38959 * 119.69481 * 359.68633 * 22 21 20 24 24 C 1.38402 * 119.10924 * 179.97438 * 23 22 21 25 25 C 1.38808 * 118.48355 * 0.02562 * 24 23 22 26 26 C 1.38118 * 119.29519 * 0.27507 * 25 24 23 27 27 N 1.31902 * 120.84449 * 359.40435 * 26 25 24 28 28 C 1.35679 * 126.06860 * 180.02562 * 18 17 15 29 29 C 1.46926 * 118.73635 * 53.86439 * 14 13 12 30 30 H 0.96999 * 119.99250 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46129 * 58.66392 * 11 9 7 32 32 H 1.09000 * 109.44751 * 298.69177 * 11 9 7 33 33 H 1.09004 * 109.49703 * 301.40959 * 12 11 9 34 34 H 1.08997 * 109.49886 * 181.31959 * 12 11 9 35 35 H 1.09004 * 109.58743 * 185.58066 * 13 12 11 36 36 H 1.08998 * 109.70581 * 65.22384 * 13 12 11 37 37 H 0.96997 * 119.99642 * 354.79362 * 17 15 14 38 38 H 1.08003 * 125.80408 * 0.02640 * 19 18 17 39 39 H 1.08000 * 120.44044 * 0.02681 * 23 22 21 40 40 H 1.07998 * 120.75906 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.35009 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.57885 * 179.70316 * 26 25 24 43 43 H 1.08002 * 126.24417 * 359.97438 * 28 18 17 44 44 H 1.09004 * 109.58881 * 65.92776 * 29 14 13 45 45 H 1.09001 * 109.58190 * 186.34644 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6225 -2.5570 0.8893 11 6 2.2448 -3.6629 0.0005 12 6 1.4807 -4.9886 0.0337 13 6 0.6055 -5.1003 -1.2186 14 7 -0.2531 -3.9109 -1.3031 15 6 -1.5894 -4.0359 -1.4256 16 8 -2.2803 -3.0483 -1.5865 17 7 -2.1601 -5.2557 -1.3697 18 6 -3.5627 -5.3782 -1.3874 19 6 -4.4837 -4.3216 -1.4597 20 7 -5.6911 -4.8255 -1.4584 21 7 -5.5875 -6.2201 -1.3765 22 6 -6.6531 -7.1241 -1.3468 23 6 -7.9588 -6.6510 -1.3942 24 6 -9.0047 -7.5569 -1.3646 25 6 -8.7062 -8.9103 -1.2877 26 6 -7.3849 -9.3092 -1.2377 27 7 -6.4090 -8.4226 -1.2738 28 6 -4.2639 -6.5387 -1.3365 29 6 0.3735 -2.5828 -1.2577 30 1 -0.4849 0.8401 -0.0004 31 1 2.8871 -3.5920 0.8783 32 1 2.8557 -3.6184 -0.9011 33 1 0.8505 -5.0231 0.9224 34 1 2.1893 -5.8164 0.0573 35 1 -0.0145 -5.9944 -1.1525 36 1 1.2374 -5.1585 -2.1047 37 1 -1.6046 -6.0490 -1.3173 38 1 -4.2375 -3.2713 -1.5120 39 1 -8.1547 -5.5906 -1.4542 40 1 -10.0297 -7.2185 -1.4005 41 1 -9.4990 -9.6434 -1.2624 42 1 -7.1475 -10.3608 -1.1729 43 1 -3.8483 -7.5337 -1.2755 44 1 0.9888 -2.4384 -2.1459 45 1 -0.3995 -1.8153 -1.2175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596752247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 108.663698 kcal Electronic energy + Delta-G solvation = -28688.507709 eV Core-core repulsion = 24708.600127 eV Total energy + Delta-G solvation = -3979.907582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68685 -40.30741 -39.56969 -36.98343 -34.68494 -33.65612 -33.14413 -32.63162 -31.76534 -30.20500 -29.77863 -28.58570 -25.11675 -24.77120 -24.10160 -23.77457 -21.90642 -21.62991 -21.04723 -19.98643 -18.96389 -18.12185 -17.67379 -16.73876 -16.57080 -16.18538 -15.72996 -15.65707 -15.08531 -14.88900 -14.58817 -14.28432 -14.13143 -13.81480 -13.79036 -13.54761 -13.46901 -12.88603 -12.72297 -12.60085 -12.37202 -12.33153 -11.96723 -11.07188 -11.02752 -10.95551 -10.88677 -10.54346 -10.44120 -10.35227 -10.24120 -10.10265 -9.98749 -9.91629 -9.51469 -9.13044 -8.99848 -8.93165 -8.43870 -7.93323 -7.45755 -5.99600 -4.08323 0.44617 0.84929 1.94631 1.98850 2.75500 3.01969 3.32991 3.38985 3.39973 3.50077 3.82220 4.03713 4.24771 4.32041 4.44081 4.54303 4.68561 4.77319 4.98499 5.08669 5.19327 5.30571 5.37491 5.40623 5.43811 5.51236 5.61128 5.70329 5.82777 5.92911 6.10289 6.12726 6.27367 6.35039 6.52966 6.61459 6.75801 6.86993 6.95241 6.99804 7.03986 7.25073 7.26148 7.39411 7.69617 7.76750 7.88893 8.02704 8.38343 8.41187 8.94434 9.05762 9.57275 11.05750 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.002237 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.701193 B =12512.578880 C =13545.166307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.615 5.615 15 C 0.704 3.296 16 O -0.571 6.571 17 N -0.668 5.668 18 C 0.054 3.946 19 C 0.083 3.917 20 N -0.278 5.278 21 N -0.331 5.331 22 C 0.389 3.611 23 C -0.172 4.172 24 C -0.050 4.050 25 C -0.198 4.198 26 C 0.134 3.866 27 N -0.513 5.513 28 C 0.016 3.984 29 C 0.128 3.872 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.403 0.597 38 H 0.221 0.779 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.182 0.818 44 H 0.042 0.958 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 -20.087 -3.222 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.011 4.011 14 N -0.351 5.351 15 C 0.406 3.594 16 O -0.448 6.448 17 N -0.319 5.319 18 C -0.052 4.052 19 C -0.107 4.107 20 N -0.097 5.097 21 N -0.111 5.111 22 C 0.161 3.839 23 C -0.194 4.194 24 C -0.076 4.076 25 C -0.219 4.219 26 C -0.024 4.024 27 N -0.226 5.226 28 C -0.127 4.127 29 C 0.008 3.992 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.241 0.759 38 H 0.237 0.763 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.182 0.818 43 H 0.199 0.801 44 H 0.061 0.939 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.822 -19.226 -3.341 23.914 hybrid contribution 0.954 0.399 0.069 1.036 sum -12.868 -18.828 -3.271 23.039 Atomic orbital electron populations 1.69872 1.05706 1.27009 1.49057 1.25051 0.94899 0.99246 0.94809 0.86651 0.79576 0.83187 0.78550 1.20252 1.21256 1.20326 1.21027 0.92858 0.90089 1.52106 0.92408 1.19066 0.92614 0.92242 0.94005 0.95239 1.21623 0.98564 0.93979 1.00641 1.21952 0.98643 0.99282 0.97324 1.21566 0.93443 0.87165 0.98943 1.47818 1.03028 1.09368 1.74901 1.15819 0.82827 0.82301 0.78421 1.90790 1.61156 1.36429 1.56423 1.42287 1.02956 1.08727 1.77888 1.17583 0.84270 0.92886 1.10443 1.25012 0.87235 1.02045 0.96450 1.77497 1.22606 0.85047 1.24526 1.45168 1.03043 1.04587 1.58269 1.17646 0.84813 0.86212 0.95245 1.21641 0.90760 1.02607 1.04408 1.21513 0.99533 0.92677 0.93887 1.22107 0.98251 0.96864 1.04704 1.22503 0.87828 0.98410 0.93649 1.66897 1.38402 1.00472 1.16878 1.21826 0.83289 0.98990 1.08548 1.22374 0.98375 0.80038 0.98409 0.92542 0.92966 0.93113 0.92070 0.92170 0.92196 0.91696 0.75916 0.76268 0.83331 0.83996 0.84266 0.81849 0.80120 0.93926 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 11.41 55.43 0.63 -24.64 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.88 8.56 -34.44 -0.29 -14.17 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.96 2.26 -91.42 -0.21 0.75 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.11 5.10 -26.68 -0.14 -2.25 16 12 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 13 C 0.11 1.64 6.43 -3.71 -0.02 1.62 16 14 N -0.62 -11.86 2.97 -178.23 -0.53 -12.39 16 15 C 0.70 13.85 8.27 -86.92 -0.72 13.14 16 16 O -0.57 -13.29 12.95 5.28 0.07 -13.22 16 17 N -0.67 -10.24 5.39 -14.38 -0.08 -10.32 16 18 C 0.05 0.84 6.90 -83.85 -0.58 0.26 16 19 C 0.08 1.42 10.84 -17.18 -0.19 1.23 16 20 N -0.28 -4.49 11.83 30.73 0.36 -4.13 16 21 N -0.33 -4.82 3.81 -11.93 -0.05 -4.87 16 22 C 0.39 4.93 7.55 -154.39 -1.17 3.77 16 23 C -0.17 -1.80 9.70 -39.25 -0.38 -2.18 16 24 C -0.05 -0.36 10.17 -39.31 -0.40 -0.76 16 25 C -0.20 -1.25 10.11 -39.41 -0.40 -1.65 16 26 C 0.13 1.04 11.18 -17.57 -0.20 0.84 16 27 N -0.51 -5.77 9.86 -12.29 -0.12 -5.90 16 28 C 0.02 0.22 11.13 -16.53 -0.18 0.04 16 29 C 0.13 3.01 5.41 -3.49 -0.02 2.99 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.67 5.57 -51.93 -0.29 0.38 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.40 4.80 6.28 -40.82 -0.26 4.55 16 38 H 0.22 4.10 5.93 -52.48 -0.31 3.79 16 39 H 0.15 1.57 7.69 -52.49 -0.40 1.17 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 42 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.18 1.97 8.05 -52.49 -0.42 1.55 16 44 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.12 3.42 5.18 -51.93 -0.27 3.15 16 LS Contribution 369.98 15.07 5.58 5.58 Total: -1.00 -32.67 369.98 -10.02 -42.69 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.72 Total: 8.08 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -5.14 Total: 3.06 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.22 Total: -62.24 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.67 -10.02 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596752247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.353 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds