Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00418 * 2 1 4 4 H 1.48501 * 109.46998 * 239.99902 * 3 2 1 5 5 H 1.48499 * 109.46912 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47360 * 120.00016 * 3 2 1 7 7 C 1.37876 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00370 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99868 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52721 * 300.07559 * 9 7 2 11 11 C 1.53048 * 109.49525 * 179.97438 * 9 7 2 12 12 C 1.53043 * 109.53547 * 178.68416 * 11 9 7 13 13 C 1.53190 * 109.31400 * 61.36475 * 12 11 9 14 14 N 1.46927 * 108.77339 * 305.36187 * 13 12 11 15 15 C 1.34777 * 120.63303 * 233.58411 * 14 13 12 16 16 O 1.21597 * 120.00280 * 185.03521 * 15 14 13 17 17 N 1.34780 * 119.99934 * 5.03653 * 15 14 13 18 18 C 1.40805 * 120.00155 * 174.79206 * 17 15 14 19 19 C 1.40357 * 126.06984 * 359.97324 * 18 17 15 20 20 N 1.30830 * 108.39048 * 179.77958 * 19 18 17 21 21 N 1.40077 * 108.38040 * 0.38002 * 20 19 18 22 22 C 1.39776 * 126.07074 * 179.88049 * 21 20 19 23 23 C 1.38959 * 119.69481 * 359.68633 * 22 21 20 24 24 C 1.38402 * 119.10924 * 179.97438 * 23 22 21 25 25 C 1.38808 * 118.48355 * 0.02562 * 24 23 22 26 26 C 1.38118 * 119.29519 * 0.27507 * 25 24 23 27 27 N 1.31902 * 120.84449 * 359.40435 * 26 25 24 28 28 C 1.35679 * 126.06860 * 180.02562 * 18 17 15 29 29 C 1.46926 * 118.73635 * 53.86439 * 14 13 12 30 30 H 0.96999 * 119.99250 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46129 * 58.66392 * 11 9 7 32 32 H 1.09000 * 109.44751 * 298.69177 * 11 9 7 33 33 H 1.09004 * 109.49703 * 301.40959 * 12 11 9 34 34 H 1.08997 * 109.49886 * 181.31959 * 12 11 9 35 35 H 1.09004 * 109.58743 * 185.58066 * 13 12 11 36 36 H 1.08998 * 109.70581 * 65.22384 * 13 12 11 37 37 H 0.96997 * 119.99642 * 354.79362 * 17 15 14 38 38 H 1.08003 * 125.80408 * 0.02640 * 19 18 17 39 39 H 1.08000 * 120.44044 * 0.02681 * 23 22 21 40 40 H 1.07998 * 120.75906 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.35009 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.57885 * 179.70316 * 26 25 24 43 43 H 1.08002 * 126.24417 * 359.97438 * 28 18 17 44 44 H 1.09004 * 109.58881 * 65.92776 * 29 14 13 45 45 H 1.09001 * 109.58190 * 186.34644 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6225 -2.5570 0.8893 11 6 2.2448 -3.6629 0.0005 12 6 1.4807 -4.9886 0.0337 13 6 0.6055 -5.1003 -1.2186 14 7 -0.2531 -3.9109 -1.3031 15 6 -1.5894 -4.0359 -1.4256 16 8 -2.2803 -3.0483 -1.5865 17 7 -2.1601 -5.2557 -1.3697 18 6 -3.5627 -5.3782 -1.3874 19 6 -4.4837 -4.3216 -1.4597 20 7 -5.6911 -4.8255 -1.4584 21 7 -5.5875 -6.2201 -1.3765 22 6 -6.6531 -7.1241 -1.3468 23 6 -7.9588 -6.6510 -1.3942 24 6 -9.0047 -7.5569 -1.3646 25 6 -8.7062 -8.9103 -1.2877 26 6 -7.3849 -9.3092 -1.2377 27 7 -6.4090 -8.4226 -1.2738 28 6 -4.2639 -6.5387 -1.3365 29 6 0.3735 -2.5828 -1.2577 30 1 -0.4849 0.8401 -0.0004 31 1 2.8871 -3.5920 0.8783 32 1 2.8557 -3.6184 -0.9011 33 1 0.8505 -5.0231 0.9224 34 1 2.1893 -5.8164 0.0573 35 1 -0.0145 -5.9944 -1.1525 36 1 1.2374 -5.1585 -2.1047 37 1 -1.6046 -6.0490 -1.3173 38 1 -4.2375 -3.2713 -1.5120 39 1 -8.1547 -5.5906 -1.4542 40 1 -10.0297 -7.2185 -1.4005 41 1 -9.4990 -9.6434 -1.2624 42 1 -7.1475 -10.3608 -1.1729 43 1 -3.8483 -7.5337 -1.2755 44 1 0.9888 -2.4384 -2.1459 45 1 -0.3995 -1.8153 -1.2175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596752247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 88.507190 kcal Electronic energy + Delta-G solvation = -28689.381760 eV Core-core repulsion = 24708.600127 eV Total energy + Delta-G solvation = -3980.781634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.80146 -41.39151 -40.72573 -38.52741 -36.06382 -35.22871 -34.33412 -33.53127 -33.23725 -31.55333 -31.11931 -29.69414 -27.01740 -26.18364 -24.97975 -24.66111 -23.47142 -22.80081 -22.21688 -21.35436 -20.38916 -19.26226 -19.11701 -18.23278 -17.56433 -17.36496 -16.86548 -16.66603 -16.52304 -16.26381 -16.12409 -15.50431 -15.29826 -15.20409 -14.96952 -14.73239 -14.47174 -14.25487 -14.15578 -13.97356 -13.86183 -13.52747 -12.98480 -12.83933 -12.70277 -12.30850 -12.26283 -12.16343 -12.12914 -11.83107 -11.60980 -11.30026 -11.17514 -10.94957 -10.93621 -10.82869 -10.69987 -10.49063 -9.87374 -9.46152 -8.67144 -8.08168 -6.24737 -0.38629 0.21078 0.97458 0.97864 1.42384 1.43462 1.45170 1.52199 1.65471 2.35736 2.43786 2.79450 2.91544 3.20953 3.33220 3.44993 3.84056 3.98300 4.03405 4.05913 4.11785 4.17247 4.23619 4.34467 4.38712 4.54006 4.63082 4.73938 4.76178 4.81499 4.86338 4.98046 5.09680 5.13636 5.21792 5.28388 5.30251 5.34895 5.51134 5.58108 5.64258 5.67725 5.87409 5.96008 6.02976 6.11675 6.27549 6.37598 6.86199 6.87754 7.02456 7.44863 7.56975 8.94962 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.002237 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.701193 B =12512.578880 C =13545.166307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.014 1.014 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.106 3.894 14 N -0.620 5.620 15 C 0.697 3.303 16 O -0.618 6.618 17 N -0.645 5.645 18 C 0.026 3.974 19 C 0.056 3.944 20 N -0.292 5.292 21 N -0.328 5.328 22 C 0.344 3.656 23 C -0.185 4.185 24 C -0.047 4.047 25 C -0.175 4.175 26 C 0.126 3.874 27 N -0.527 5.527 28 C 0.045 3.955 29 C 0.143 3.857 30 H 0.259 0.741 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.422 0.578 38 H 0.194 0.806 39 H 0.136 0.864 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.200 0.800 43 H 0.215 0.785 44 H 0.038 0.962 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.264 -24.628 -3.448 28.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.004 0.996 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.016 4.016 14 N -0.355 5.355 15 C 0.399 3.601 16 O -0.498 6.498 17 N -0.297 5.297 18 C -0.079 4.079 19 C -0.133 4.133 20 N -0.112 5.112 21 N -0.108 5.108 22 C 0.119 3.881 23 C -0.208 4.208 24 C -0.073 4.073 25 C -0.195 4.195 26 C -0.032 4.032 27 N -0.241 5.241 28 C -0.099 4.099 29 C 0.021 3.979 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.263 0.737 38 H 0.211 0.789 39 H 0.154 0.846 40 H 0.191 0.809 41 H 0.199 0.801 42 H 0.216 0.784 43 H 0.231 0.769 44 H 0.056 0.944 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.210 -23.847 -3.563 27.988 hybrid contribution 0.827 1.572 0.157 1.783 sum -13.383 -22.276 -3.406 26.209 Atomic orbital electron populations 1.70079 1.07353 1.27273 1.50517 1.25885 0.95554 1.02857 0.94701 0.85646 0.78278 0.78917 0.79047 1.19181 1.21648 1.19401 1.21489 0.93285 0.91478 1.51124 0.91942 1.18997 0.93096 0.93761 0.92250 0.99550 1.21513 0.97652 0.94163 1.00984 1.21908 0.99012 0.98286 0.97155 1.21951 0.93688 0.86416 0.99509 1.47672 1.03463 1.09419 1.74925 1.16003 0.82784 0.83002 0.78299 1.90777 1.62279 1.38489 1.58275 1.41820 1.03064 1.07754 1.77104 1.17626 0.84104 0.93132 1.13026 1.24655 0.88452 1.01610 0.98567 1.77411 1.22115 0.86495 1.25169 1.45430 1.04089 1.04234 1.57081 1.17926 0.84763 0.86809 0.98618 1.21765 0.91128 1.02851 1.05064 1.21946 1.00099 0.92815 0.92465 1.22622 0.98810 0.97064 1.01017 1.23257 0.88038 0.99386 0.92521 1.66880 1.40054 0.99978 1.17172 1.22263 0.82805 0.99413 1.05440 1.21742 0.96835 0.81530 0.97818 0.93176 0.93046 0.92269 0.93138 0.87594 0.88067 0.89711 0.73700 0.78924 0.84613 0.80880 0.80105 0.78357 0.76851 0.94387 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.85 11.41 21.45 0.24 -55.61 16 2 C 0.01 0.54 5.30 84.65 0.45 0.99 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -29.35 8.56 25.60 0.22 -29.13 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.04 1.92 2.26 -11.31 -0.03 1.89 16 10 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 11 C -0.11 -3.95 5.10 30.62 0.16 -3.79 16 12 C -0.13 -3.50 6.08 30.67 0.19 -3.31 16 13 C 0.11 2.83 6.43 86.36 0.56 3.38 16 14 N -0.62 -24.35 2.97 -836.05 -2.48 -26.83 16 15 C 0.70 28.65 8.27 179.05 1.48 30.13 16 16 O -0.62 -31.31 12.95 -4.02 -0.05 -31.36 16 17 N -0.64 -19.77 5.39 -317.68 -1.71 -21.48 16 18 C 0.03 0.84 6.90 37.62 0.26 1.10 16 19 C 0.06 2.09 10.84 85.36 0.93 3.02 16 20 N -0.29 -10.05 11.83 -56.70 -0.67 -10.72 16 21 N -0.33 -9.65 3.81 -191.67 -0.73 -10.38 16 22 C 0.34 8.44 7.55 132.78 1.00 9.45 16 23 C -0.19 -3.76 9.70 22.48 0.22 -3.54 16 24 C -0.05 -0.54 10.17 22.45 0.23 -0.31 16 25 C -0.18 -1.39 10.11 22.38 0.23 -1.16 16 26 C 0.13 1.44 11.18 84.65 0.95 2.39 16 27 N -0.53 -10.60 9.86 -192.81 -1.90 -12.50 16 28 C 0.05 1.20 11.13 83.42 0.93 2.13 16 29 C 0.14 7.09 5.41 86.51 0.47 7.56 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 1.86 5.57 -2.39 -0.01 1.84 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.42 9.13 6.28 -92.71 -0.58 8.55 16 38 H 0.19 8.22 5.93 -2.91 -0.02 8.20 16 39 H 0.14 3.00 7.69 -2.91 -0.02 2.98 16 40 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 42 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.21 4.06 8.05 -2.91 -0.02 4.03 16 44 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.08 4.62 5.18 -2.39 -0.01 4.61 16 Total: -1.00 -80.27 369.98 3.40 -76.87 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.45 Total: 24.70 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 8.22 Total: 20.77 kcal Atomic # 7 Polarization: -130.26 SS G_CDS: -7.25 Total: -137.51 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.05 Total: -31.36 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -80.27 3.40 -76.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596752247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.380 kcal (2) G-P(sol) polarization free energy of solvation -80.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds