Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99556 * 2 1 4 4 H 1.48498 * 109.46924 * 269.99835 * 3 2 1 5 5 H 1.48500 * 109.47170 * 30.00187 * 3 2 1 6 6 H 1.48499 * 109.46987 * 150.00037 * 3 2 1 7 7 C 1.37878 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99699 * 0.02562 * 7 2 1 9 9 C 1.50692 * 119.99859 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.49977 * 59.93631 * 9 7 2 11 11 C 1.53036 * 109.49983 * 180.02562 * 9 7 2 12 12 C 1.53040 * 109.54085 * 181.34851 * 11 9 7 13 13 C 1.53190 * 109.31329 * 298.63251 * 12 11 9 14 14 N 1.46924 * 108.77514 * 54.63605 * 13 12 11 15 15 C 1.34780 * 120.63341 * 126.36628 * 14 13 12 16 16 O 1.21689 * 119.99811 * 185.48569 * 15 14 13 17 17 C 1.46765 * 119.99757 * 5.48355 * 15 14 13 18 18 C 1.41531 * 126.50880 * 39.99374 * 17 15 14 19 19 N 1.30293 * 108.25935 * 179.97438 * 18 17 15 20 20 N 1.39900 * 109.24781 * 359.97438 * 19 18 17 21 21 C 1.39732 * 125.77253 * 179.97438 * 20 19 18 22 22 C 1.38972 * 119.69450 * 335.02991 * 21 20 19 23 23 C 1.38390 * 119.10670 * 180.02562 * 22 21 20 24 24 C 1.38815 * 118.49139 * 0.02562 * 23 22 21 25 25 C 1.38112 * 119.29567 * 359.95751 * 24 23 22 26 26 N 1.31902 * 120.84156 * 0.04416 * 25 24 23 27 27 C 1.35238 * 108.45011 * 0.24434 * 20 19 18 28 28 N 1.37927 * 126.47048 * 179.73425 * 27 20 19 29 29 C 1.46931 * 118.73728 * 306.64307 * 14 13 12 30 30 H 0.96996 * 120.00075 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.45909 * 61.32824 * 11 9 7 32 32 H 1.08996 * 109.46002 * 301.37324 * 11 9 7 33 33 H 1.09005 * 109.49676 * 178.68520 * 12 11 9 34 34 H 1.09002 * 109.49823 * 58.58541 * 12 11 9 35 35 H 1.09000 * 109.59140 * 294.85167 * 13 12 11 36 36 H 1.09002 * 109.58883 * 174.41740 * 13 12 11 37 37 H 1.08003 * 125.86782 * 359.97438 * 18 17 15 38 38 H 1.08004 * 120.44682 * 359.74159 * 22 21 20 39 39 H 1.08001 * 120.75885 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.35397 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.58089 * 180.02562 * 25 24 23 42 42 H 0.97006 * 119.99953 * 0.02686 * 28 27 20 43 43 H 0.97004 * 120.00081 * 180.02562 * 28 27 20 44 44 H 1.08998 * 109.58591 * 173.14113 * 29 14 13 45 45 H 1.08993 * 109.58564 * 293.56737 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8757 -0.6786 0.8887 11 6 4.0225 -2.6365 0.0001 12 6 5.5525 -2.6377 0.0334 13 6 6.0871 -1.9356 -1.2188 14 7 5.4864 -0.5975 -1.3035 15 6 6.2629 0.4974 -1.4250 16 8 5.7612 1.6057 -1.3938 17 6 7.7135 0.3531 -1.5949 18 6 8.3764 -0.6157 -2.3856 19 7 9.6602 -0.4193 -2.2806 20 7 9.8925 0.6682 -1.4318 21 6 11.1456 1.1762 -1.0792 22 6 12.2614 0.3490 -1.1250 23 6 13.4964 0.8646 -0.7727 24 6 13.5723 2.1953 -0.3848 25 6 12.4221 2.9595 -0.3629 26 7 11.2586 2.4402 -0.7042 27 6 8.6993 1.1410 -1.0055 28 7 8.4967 2.2040 -0.1503 29 6 4.0233 -0.4750 -1.2471 30 1 -0.4850 0.8400 0.0004 31 1 3.6785 -3.1436 -0.9014 32 1 3.6397 -3.1572 0.8778 33 1 5.9151 -3.6654 0.0571 34 1 5.8974 -2.1091 0.9221 35 1 5.8195 -2.5129 -2.1038 36 1 7.1714 -1.8458 -1.1526 37 1 7.9000 -1.3854 -2.9747 38 1 12.1653 -0.6835 -1.4269 39 1 14.3810 0.2455 -0.7982 40 1 14.5208 2.6285 -0.1033 41 1 12.4759 3.9953 -0.0623 42 1 9.2561 2.6914 0.2059 43 1 7.5950 2.4642 0.0950 44 1 3.7463 0.5781 -1.1995 45 1 3.5840 -0.9308 -2.1343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597901554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = 97.582093 kcal Electronic energy + Delta-G solvation = -29706.487649 eV Core-core repulsion = 25726.099533 eV Total energy + Delta-G solvation = -3980.388116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.92275 -40.36471 -39.16983 -36.78126 -35.07095 -33.87957 -33.25413 -32.90710 -31.82843 -30.62265 -29.79655 -28.81071 -25.30482 -25.15554 -24.26577 -24.01695 -22.12500 -21.69105 -21.29547 -19.66951 -18.94909 -18.25387 -17.26627 -16.80658 -16.67731 -16.56509 -16.14972 -15.90155 -15.57362 -15.09921 -14.62277 -14.57639 -14.09413 -13.94626 -13.88952 -13.71578 -13.60615 -13.13700 -12.90310 -12.70707 -12.51026 -12.33649 -12.06690 -11.46599 -11.22516 -11.09129 -11.00524 -10.70558 -10.52142 -10.39777 -10.28003 -10.15170 -10.01720 -9.71532 -9.47937 -9.13953 -9.02197 -8.70488 -8.54640 -8.04172 -7.78455 -6.05783 -4.07113 0.34586 0.67078 1.68492 1.92239 2.26063 3.21994 3.38180 3.42958 3.51458 3.57969 3.62663 3.74766 3.91269 4.20158 4.39973 4.47511 4.50868 4.63296 4.76068 5.04258 5.18147 5.24638 5.27249 5.32389 5.35865 5.47305 5.47846 5.63766 5.66033 5.87769 5.90822 6.10649 6.17169 6.23964 6.31498 6.48048 6.50325 6.61673 6.74026 6.84230 7.00499 7.06138 7.18088 7.22702 7.35434 7.50826 7.74527 7.77979 8.04197 8.52132 8.76157 8.97479 9.56118 11.06129 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002975 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.850070 B = 9408.317270 C =10267.045003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.262 1.262 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.029 0.971 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.106 3.894 14 N -0.601 5.601 15 C 0.595 3.405 16 O -0.559 6.559 17 C -0.361 4.361 18 C 0.134 3.866 19 N -0.305 5.305 20 N -0.351 5.351 21 C 0.377 3.623 22 C -0.159 4.159 23 C -0.051 4.051 24 C -0.188 4.188 25 C 0.133 3.867 26 N -0.517 5.517 27 C 0.448 3.552 28 N -0.817 5.817 29 C 0.104 3.896 30 H 0.264 0.736 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.199 0.801 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.167 0.833 42 H 0.411 0.589 43 H 0.426 0.574 44 H 0.079 0.921 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.513 0.344 -1.024 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.047 0.953 11 C -0.138 4.138 12 C -0.174 4.174 13 C -0.017 4.017 14 N -0.333 5.333 15 C 0.383 3.617 16 O -0.439 6.439 17 C -0.381 4.381 18 C -0.055 4.055 19 N -0.122 5.122 20 N -0.134 5.134 21 C 0.150 3.850 22 C -0.182 4.182 23 C -0.077 4.077 24 C -0.209 4.209 25 C -0.024 4.024 26 N -0.232 5.232 27 C 0.216 3.784 28 N -0.364 5.364 29 C -0.016 4.016 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.215 0.785 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.184 0.816 42 H 0.244 0.756 43 H 0.260 0.740 44 H 0.096 0.904 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 29.491 1.166 -1.341 29.545 hybrid contribution 0.249 1.027 0.347 1.112 sum 29.740 2.192 -0.994 29.837 Atomic orbital electron populations 1.69898 1.06288 1.27084 1.50258 1.25054 0.94760 0.99152 0.94119 0.86950 0.79588 0.83294 0.78998 1.19953 1.22564 1.18719 1.20962 0.88270 0.94571 1.51488 0.90513 1.19400 0.96723 0.92269 0.93127 0.95307 1.21437 0.92108 0.98789 1.01440 1.21977 0.98433 0.99403 0.97577 1.21852 0.97874 0.83410 0.98548 1.48180 1.07939 1.05767 1.71405 1.17016 0.84322 0.84207 0.76119 1.90756 1.75019 1.25349 1.52743 1.19354 0.93383 1.07537 1.17840 1.24012 0.89975 0.96212 0.95334 1.77247 1.17561 1.03620 1.13816 1.45226 1.01327 1.27092 1.39792 1.17753 0.83325 0.88873 0.95067 1.21677 0.91575 1.01842 1.03067 1.21568 0.97294 0.95313 0.93537 1.22159 1.00438 0.95190 1.03139 1.22547 0.86093 1.00075 0.93725 1.66804 1.29839 1.10947 1.15578 1.18075 0.85192 0.87067 0.88022 1.41893 1.13283 1.31928 1.49321 1.22470 0.75760 1.02416 1.00971 0.92590 0.92488 0.92384 0.91755 0.92245 0.91619 0.90108 0.78492 0.83304 0.83765 0.83987 0.81587 0.75584 0.74023 0.90354 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 3 Si 0.88 23.54 24.32 -169.99 -4.13 19.40 16 4 H -0.27 -7.39 6.92 56.52 0.39 -6.99 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.26 -6.98 6.53 56.52 0.37 -6.61 16 7 C -0.51 -14.39 9.15 -34.44 -0.32 -14.70 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 0.10 1.83 -91.88 -0.17 -0.06 16 10 H 0.03 0.73 7.19 -51.93 -0.37 0.35 16 11 C -0.10 -1.90 5.11 -26.69 -0.14 -2.04 16 12 C -0.14 -2.06 6.08 -26.61 -0.16 -2.22 16 13 C 0.11 1.55 5.47 -3.71 -0.02 1.53 16 14 N -0.60 -11.43 2.98 -174.54 -0.52 -11.95 16 15 C 0.59 11.67 7.44 -12.81 -0.10 11.57 16 16 O -0.56 -12.98 15.69 5.20 0.08 -12.90 16 17 C -0.36 -5.82 5.23 -104.81 -0.55 -6.37 16 18 C 0.13 1.77 9.61 -16.95 -0.16 1.61 16 19 N -0.30 -4.10 11.97 30.89 0.37 -3.73 16 20 N -0.35 -4.83 3.75 -11.07 -0.04 -4.87 16 21 C 0.38 4.39 7.37 -154.42 -1.14 3.25 16 22 C -0.16 -1.42 9.73 -39.25 -0.38 -1.80 16 23 C -0.05 -0.30 10.17 -39.31 -0.40 -0.70 16 24 C -0.19 -0.98 10.11 -39.41 -0.40 -1.38 16 25 C 0.13 0.91 11.18 -17.57 -0.20 0.72 16 26 N -0.52 -5.41 8.10 -12.30 -0.10 -5.51 16 27 C 0.45 6.79 7.88 -153.52 -1.21 5.58 16 28 N -0.82 -11.07 8.97 31.45 0.28 -10.78 16 29 C 0.10 2.37 5.10 -3.93 -0.02 2.35 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.02 4.76 -51.93 -0.25 0.77 16 37 H 0.20 1.97 7.33 -52.48 -0.38 1.59 16 38 H 0.15 1.26 7.89 -52.48 -0.41 0.85 16 39 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 40 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 41 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.41 4.75 6.86 -40.82 -0.28 4.47 16 43 H 0.43 6.14 7.98 -40.82 -0.33 5.81 16 44 H 0.08 2.00 2.31 -51.93 -0.12 1.88 16 45 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -36.04 360.80 -8.85 -44.89 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.55 Total: 7.63 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -5.45 Total: -0.66 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: 0.76 Total: -63.80 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.13 Total: 19.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.04 -8.85 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597901554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.469 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds