Wall clock time and date at job start Sat Apr 11 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99890 * 2 1 4 4 H 1.48503 * 109.47115 * 239.99971 * 3 2 1 5 5 H 1.48505 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47326 * 119.99930 * 3 2 1 7 7 C 1.37873 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99923 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00143 * 169.99971 * 10 9 7 12 12 C 1.53236 * 109.34236 * 187.25512 * 11 10 9 13 13 N 1.47079 * 108.51889 * 306.16793 * 12 11 10 14 14 C 1.34784 * 120.88500 * 231.18414 * 13 12 11 15 15 O 1.21509 * 120.00226 * 180.93503 * 14 13 12 16 16 C 1.48168 * 119.99505 * 0.93883 * 14 13 12 17 17 C 1.39238 * 119.68289 * 159.37514 * 16 14 13 18 18 C 1.38711 * 119.18424 * 180.29580 * 17 16 14 19 19 C 1.38410 * 118.55689 * 359.43707 * 18 17 16 20 20 C 1.39257 * 119.29994 * 0.27676 * 19 18 17 21 21 N 1.39824 * 119.61872 * 180.02562 * 20 19 18 22 22 C 1.35841 * 126.10367 * 180.02562 * 21 20 19 23 23 C 1.35277 * 107.61309 * 179.97438 * 22 21 20 24 24 C 1.39960 * 107.96898 * 359.97438 * 23 22 21 25 25 N 1.30814 * 108.36567 * 359.71566 * 24 23 22 26 26 N 1.31985 * 120.76628 * 0.02562 * 20 19 18 27 27 C 1.47080 * 118.23623 * 51.46043 * 13 12 11 28 28 C 1.46899 * 111.00042 * 294.29983 * 10 9 7 29 29 H 0.97001 * 120.00040 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47058 * 59.99827 * 9 7 2 31 31 H 1.08998 * 109.47382 * 299.99674 * 9 7 2 32 32 H 1.08996 * 109.49097 * 67.29249 * 11 10 9 33 33 H 1.09000 * 109.49351 * 307.21666 * 11 10 9 34 34 H 1.09000 * 109.63201 * 186.46164 * 12 11 10 35 35 H 1.08999 * 109.63306 * 65.87920 * 12 11 10 36 36 H 1.07994 * 120.40884 * 0.03403 * 17 16 14 37 37 H 1.08001 * 120.71815 * 179.71021 * 18 17 16 38 38 H 1.08000 * 120.34654 * 180.25254 * 19 18 17 39 39 H 1.07999 * 126.19569 * 359.97438 * 22 21 20 40 40 H 1.08000 * 126.01377 * 179.97438 * 23 22 21 41 41 H 1.08000 * 125.81513 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.62909 * 68.25380 * 27 13 12 43 43 H 1.09004 * 109.62757 * 188.83077 * 27 13 12 44 44 H 1.08997 * 109.49572 * 292.70871 * 28 10 9 45 45 H 1.09005 * 109.49603 * 52.78893 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5214 -4.8934 0.2387 12 6 2.5639 -6.0031 0.4115 13 7 3.4617 -5.9861 -0.7534 14 6 3.7121 -7.1123 -1.4503 15 8 4.4698 -7.0834 -2.3998 16 6 3.0634 -8.3855 -1.0586 17 6 2.9632 -9.4214 -1.9836 18 6 2.3484 -10.6067 -1.6078 19 6 1.8648 -10.7205 -0.3159 20 6 2.0035 -9.6475 0.5607 21 7 1.5180 -9.7554 1.8675 22 6 1.5820 -8.7960 2.8270 23 6 1.0022 -9.2941 3.9432 24 6 0.5697 -10.5950 3.6613 25 7 0.8718 -10.8696 2.4185 26 7 2.5880 -8.5296 0.1724 27 6 4.0839 -4.7089 -1.1338 28 6 2.9768 -3.6490 -1.2494 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5570 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 0.8798 -5.1263 -0.6111 33 1 0.9161 -4.8191 1.1422 34 1 2.0634 -6.9694 0.4739 35 1 3.1396 -5.8264 1.3201 36 1 3.3556 -9.3020 -2.9826 37 1 2.2530 -11.4245 -2.3067 38 1 1.3847 -11.6319 0.0087 39 1 2.0169 -7.8135 2.7185 40 1 0.8925 -8.7786 4.8859 41 1 0.0673 -11.2573 4.3508 42 1 4.8029 -4.4102 -0.3710 43 1 4.5887 -4.8191 -2.0936 44 1 2.3150 -3.8992 -2.0785 45 1 3.4273 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:28 Heat of formation + Delta-G solvation = 106.000501 kcal Electronic energy + Delta-G solvation = -29356.187518 eV Core-core repulsion = 25376.164451 eV Total energy + Delta-G solvation = -3980.023067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.69770 -41.78363 -40.41401 -39.00711 -36.14736 -34.75584 -34.54927 -33.87376 -32.08298 -31.36700 -30.69560 -30.00060 -27.50248 -25.95720 -25.29588 -24.53726 -23.83786 -22.72848 -22.00548 -21.67742 -20.49718 -19.17023 -18.71528 -18.45951 -17.42732 -17.20122 -16.99750 -16.86304 -16.55345 -16.27138 -16.03374 -15.67489 -15.49208 -15.38250 -15.08404 -14.72240 -14.70512 -14.45474 -14.22611 -14.00652 -13.68440 -13.44328 -13.33523 -13.07487 -12.79551 -12.59854 -12.45329 -12.37829 -12.25010 -11.90034 -11.80143 -11.67559 -11.54978 -11.39042 -11.12171 -10.63236 -10.31543 -10.24484 -9.88798 -9.37639 -9.10738 -8.21725 -6.32152 -0.63846 -0.31270 0.94881 0.98945 1.41956 1.44741 1.52554 1.55450 1.75035 1.84162 2.39633 2.56558 2.78134 3.10550 3.22641 3.33180 3.48035 3.79948 3.85452 3.93159 4.00069 4.07441 4.13020 4.17796 4.27854 4.31495 4.38460 4.51488 4.55748 4.71857 4.78585 4.86804 4.88528 4.91071 4.95532 5.00414 5.07169 5.13406 5.18740 5.24479 5.40846 5.59536 5.62122 5.97680 6.00291 6.07108 6.17855 6.28981 6.53736 6.65391 6.82891 6.87162 7.37764 8.89347 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002898 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.165404 B = 9659.366907 C =11275.044798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.537 5.537 11 C 0.039 3.961 12 C 0.099 3.901 13 N -0.589 5.589 14 C 0.567 3.433 15 O -0.562 6.562 16 C 0.096 3.904 17 C -0.123 4.123 18 C -0.034 4.034 19 C -0.141 4.141 20 C 0.351 3.649 21 N -0.342 5.342 22 C 0.056 3.944 23 C -0.257 4.257 24 C 0.071 3.929 25 N -0.311 5.311 26 N -0.487 5.487 27 C 0.123 3.877 28 C 0.057 3.943 29 H 0.265 0.735 30 H -0.043 1.043 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.085 0.915 34 H 0.146 0.854 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.197 0.803 38 H 0.167 0.833 39 H 0.186 0.814 40 H 0.181 0.819 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.011 0.989 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -25.735 3.411 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.262 5.262 11 C -0.090 4.090 12 C -0.024 4.024 13 N -0.320 5.320 14 C 0.355 3.645 15 O -0.441 6.441 16 C -0.041 4.041 17 C -0.145 4.145 18 C -0.059 4.059 19 C -0.163 4.163 20 C 0.122 3.878 21 N -0.121 5.121 22 C -0.084 4.084 23 C -0.285 4.285 24 C -0.117 4.117 25 N -0.130 5.130 26 N -0.204 5.204 27 C 0.001 3.999 28 C -0.072 4.072 29 H 0.073 0.927 30 H -0.025 1.025 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.162 0.838 35 H 0.099 0.901 36 H 0.182 0.818 37 H 0.214 0.786 38 H 0.184 0.816 39 H 0.203 0.797 40 H 0.198 0.802 41 H 0.246 0.754 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.029 0.971 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.854 -25.650 2.880 26.097 hybrid contribution -0.696 1.422 -0.434 1.641 sum 3.158 -24.228 2.446 24.555 Atomic orbital electron populations 1.70082 1.07793 1.28012 1.51647 1.25912 0.95708 1.03217 0.94711 0.85435 0.78141 0.77850 0.79195 1.19270 1.21005 1.19119 1.21427 0.93756 0.90845 1.50255 0.91499 1.19372 0.90022 0.88849 0.93446 1.62053 1.27052 1.02938 1.34166 1.22560 0.95965 0.90166 1.00281 1.22964 0.91152 1.01100 0.87150 1.48181 1.45662 1.08065 1.30066 1.18153 0.81132 0.83288 0.81949 1.90754 1.38109 1.85706 1.29508 1.20683 0.98732 0.95137 0.89522 1.22326 0.98190 0.92463 1.01483 1.22004 0.91322 0.97487 0.95127 1.22088 1.01239 0.99305 0.93692 1.18048 0.94937 0.91187 0.83603 1.45900 1.45823 1.12601 1.07733 1.23326 1.00226 0.96161 0.88728 1.22081 1.08578 0.96932 1.00916 1.24851 0.97077 0.96953 0.92835 1.77391 1.16927 1.06598 1.12060 1.66645 1.12785 1.22555 1.18402 1.21891 0.94770 0.80924 1.02315 1.22362 0.95321 0.99602 0.89952 0.92670 1.02526 0.97281 0.97129 0.89697 0.83800 0.90114 0.81844 0.78596 0.81553 0.79673 0.80172 0.75427 0.89596 0.88641 0.97102 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.29 21.45 0.28 -55.91 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.52 -29.43 8.41 25.60 0.22 -29.22 16 8 H 0.07 3.63 7.13 -2.91 -0.02 3.61 16 9 C 0.21 11.17 4.72 85.56 0.40 11.57 16 10 N -0.54 -23.23 4.62 -898.90 -4.15 -27.38 16 11 C 0.04 1.42 5.62 86.38 0.49 1.91 16 12 C 0.10 2.90 6.13 86.35 0.53 3.43 16 13 N -0.59 -18.59 3.00 -820.09 -2.46 -21.05 16 14 C 0.57 17.40 7.63 86.88 0.66 18.06 16 15 O -0.56 -19.45 15.96 -3.74 -0.06 -19.51 16 16 C 0.10 2.39 6.48 41.89 0.27 2.66 16 17 C -0.12 -2.23 9.62 22.62 0.22 -2.01 16 18 C -0.03 -0.41 10.16 22.42 0.23 -0.18 16 19 C -0.14 -2.24 9.70 22.56 0.22 -2.02 16 20 C 0.35 7.58 7.55 132.93 1.00 8.58 16 21 N -0.34 -7.34 3.81 -192.18 -0.73 -8.07 16 22 C 0.06 1.08 11.10 83.39 0.93 2.01 16 23 C -0.26 -3.85 10.80 22.00 0.24 -3.61 16 24 C 0.07 1.00 12.02 85.26 1.02 2.03 16 25 N -0.31 -6.10 11.83 -56.98 -0.67 -6.77 16 26 N -0.49 -11.63 5.83 -181.90 -1.06 -12.69 16 27 C 0.12 4.06 6.63 86.50 0.57 4.64 16 28 C 0.06 2.25 5.47 86.54 0.47 2.73 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 31 H 0.01 0.52 7.97 -2.39 -0.02 0.50 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 2.95 7.99 -2.39 -0.02 2.93 16 34 H 0.15 3.90 4.06 -51.79 -0.21 3.69 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.16 2.66 7.77 -2.91 -0.02 2.63 16 37 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 38 H 0.17 2.18 7.68 -2.91 -0.02 2.16 16 39 H 0.19 3.34 8.04 -2.91 -0.02 3.32 16 40 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.23 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.10 3.05 7.06 -2.38 -0.02 3.04 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.08 3.57 6.67 -2.38 -0.02 3.56 16 Total: -1.00 -73.57 374.24 1.92 -71.65 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.81 Total: 12.58 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 7.93 Total: 21.18 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -8.80 Total: -131.88 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.57 1.92 -71.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.652 kcal (2) G-P(sol) polarization free energy of solvation -73.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds