Wall clock time and date at job start Sat Apr 11 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47278 * 240.00256 * 3 2 1 5 5 H 1.48504 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46805 * 120.00303 * 3 2 1 7 7 C 1.38812 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 163.07776 * 7 2 1 9 9 N 1.36936 * 120.00325 * 343.07697 * 7 2 1 10 10 C 1.46928 * 120.62826 * 331.84372 * 9 7 2 11 11 C 1.53188 * 108.77621 * 233.58754 * 10 9 7 12 12 C 1.53043 * 109.31254 * 305.36453 * 11 10 9 13 13 N 1.46507 * 109.45819 * 181.38637 * 12 11 10 14 14 C 1.34774 * 119.99718 * 155.00233 * 13 12 11 15 15 O 1.21609 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.47316 * 119.99967 * 179.97438 * 14 13 12 17 17 C 1.37923 * 126.80365 * 0.17975 * 16 14 13 18 18 N 1.34189 * 107.89414 * 180.24356 * 17 16 14 19 19 H 0.97002 * 125.16692 * 179.71098 * 18 17 16 20 20 N 1.39777 * 109.66464 * 359.73911 * 18 17 16 21 21 C 1.31370 * 109.06973 * 0.02562 * 20 18 17 22 22 C 1.48276 * 126.50871 * 179.97438 * 21 20 18 23 23 C 1.39814 * 120.90582 * 145.02871 * 22 21 20 24 24 C 1.37970 * 119.01237 * 180.02562 * 23 22 21 25 25 N 1.31927 * 120.88387 * 0.02562 * 24 23 22 26 26 C 1.31924 * 122.01914 * 359.97438 * 25 24 23 27 27 C 1.37966 * 120.88417 * 0.02562 * 26 25 24 28 28 C 1.53041 * 109.53588 * 61.37017 * 12 11 10 29 29 C 1.46920 * 120.63171 * 151.82530 * 9 7 2 30 30 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58218 * 113.80150 * 10 9 7 32 32 H 1.08996 * 109.70304 * 353.44684 * 10 9 7 33 33 H 1.09005 * 109.49478 * 185.41427 * 11 10 9 34 34 H 1.08999 * 109.52783 * 65.33622 * 11 10 9 35 35 H 1.08998 * 109.45977 * 301.35846 * 12 11 10 36 36 H 0.97001 * 119.99498 * 335.00030 * 13 12 11 37 37 H 1.08008 * 126.05359 * 359.96230 * 17 16 14 38 38 H 1.07999 * 120.49218 * 359.97438 * 23 22 21 39 39 H 1.07994 * 119.55391 * 180.27262 * 24 23 22 40 40 H 1.07996 * 119.55653 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.49026 * 180.02562 * 27 26 25 42 42 H 1.08998 * 109.49852 * 58.58250 * 28 12 11 43 43 H 1.08997 * 109.49633 * 178.68256 * 28 12 11 44 44 H 1.09005 * 109.58856 * 246.19761 * 29 9 7 45 45 H 1.09003 * 109.59130 * 6.48358 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3441 10 6 0.2259 -2.3410 1.2658 11 6 0.4972 -3.3210 2.4115 12 6 0.8117 -4.7023 1.8323 13 7 1.0392 -5.6500 2.9261 14 6 0.8358 -6.9676 2.7293 15 8 0.4638 -7.3700 1.6436 16 6 1.0651 -7.9207 3.8290 17 6 1.4821 -7.6206 5.1089 18 7 1.5713 -8.7711 5.7939 19 1 1.8471 -8.8497 6.7205 20 7 1.2068 -9.8390 4.9690 21 6 0.8922 -9.3756 3.7807 22 6 0.4513 -10.1733 2.6111 23 6 -0.4931 -9.6683 1.7123 24 6 -0.8758 -10.4442 0.6376 25 7 -0.3636 -11.6460 0.4535 26 6 0.5296 -12.1594 1.2775 27 6 0.9677 -11.4513 2.3776 28 6 2.0672 -4.6181 0.9612 29 6 1.8137 -3.6527 -0.2010 30 1 -0.4850 0.8401 0.0004 31 1 -0.6771 -2.6411 0.7344 32 1 0.0966 -1.3360 1.6675 33 1 -0.3834 -3.3864 3.0505 34 1 1.3467 -2.9703 2.9976 35 1 -0.0284 -5.0418 1.2264 36 1 1.3363 -5.3290 3.7919 37 1 1.7026 -6.6347 5.4909 38 1 -0.9174 -8.6859 1.8577 39 1 -1.6014 -10.0610 -0.0646 40 1 0.9230 -13.1472 1.0885 41 1 1.6995 -11.8776 3.0478 42 1 2.9021 -4.2549 1.5604 43 1 2.3040 -5.6067 0.5679 44 1 1.0400 -4.0599 -0.8521 45 1 2.7331 -3.5125 -0.7695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:48 Heat of formation + Delta-G solvation = 98.070775 kcal Electronic energy + Delta-G solvation = -29005.389544 eV Core-core repulsion = 25025.022619 eV Total energy + Delta-G solvation = -3980.366925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56433 -39.86873 -39.36384 -37.26598 -34.55157 -33.75845 -32.32932 -31.31835 -30.82971 -30.77347 -29.99661 -29.10989 -25.21627 -24.47477 -23.68883 -23.22900 -22.24531 -21.75469 -20.65588 -19.98229 -19.48734 -18.57772 -16.93589 -16.81738 -16.38831 -16.18148 -15.90822 -15.52830 -15.27103 -14.80426 -14.40589 -14.23383 -14.01051 -13.81987 -13.78527 -13.56824 -13.44298 -13.02240 -12.92588 -12.62046 -12.38524 -11.84419 -11.49835 -11.38090 -11.12770 -10.87765 -10.73739 -10.72806 -10.51611 -10.30805 -10.06193 -9.98589 -9.76923 -9.56753 -9.50788 -9.42023 -9.13520 -8.92900 -8.68594 -8.47059 -6.70257 -5.81617 -3.23791 0.71213 1.16678 1.17586 2.06922 2.25156 3.30186 3.36906 3.39373 3.42413 3.43284 3.81058 3.91158 4.20239 4.43752 4.47650 4.65293 4.87084 4.99347 4.99928 5.12017 5.17711 5.31648 5.41339 5.48137 5.57025 5.58556 5.65067 5.81811 5.85645 6.04672 6.06496 6.20937 6.25920 6.31660 6.49869 6.55431 6.56720 6.64749 6.65463 6.78912 6.89445 6.98224 7.04866 7.28925 7.57205 7.70374 7.77872 7.93056 8.38490 8.42826 9.18921 9.82054 10.39058 11.27330 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002475 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.602401 B =11311.474240 C =12317.034326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.153 3.847 13 N -0.719 5.719 14 C 0.587 3.413 15 O -0.534 6.534 16 C -0.271 4.271 17 C 0.107 3.893 18 N -0.462 5.462 19 H 0.445 0.555 20 N -0.277 5.277 21 C 0.167 3.833 22 C 0.014 3.986 23 C -0.101 4.101 24 C 0.091 3.909 25 N -0.479 5.479 26 C 0.084 3.916 27 C -0.144 4.144 28 C -0.139 4.139 29 C 0.148 3.852 30 H 0.255 0.745 31 H 0.021 0.979 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.391 0.609 37 H 0.191 0.809 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.134 0.866 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -18.722 13.536 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.050 3.950 13 N -0.369 5.369 14 C 0.374 3.626 15 O -0.413 6.413 16 C -0.286 4.286 17 C -0.043 4.043 18 N -0.168 5.168 19 H 0.290 0.710 20 N -0.098 5.098 21 C -0.002 4.002 22 C 0.004 3.996 23 C -0.122 4.122 24 C -0.066 4.066 25 N -0.188 5.188 26 C -0.073 4.073 27 C -0.165 4.165 28 C -0.179 4.179 29 C 0.021 3.979 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.224 0.776 37 H 0.208 0.792 38 H 0.174 0.826 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.152 0.848 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.142 -20.340 12.743 24.029 hybrid contribution 1.153 2.358 1.420 2.984 sum 2.294 -17.982 14.163 23.004 Atomic orbital electron populations 1.70012 1.05237 1.25657 1.53859 1.25048 0.95287 0.98407 1.00866 0.86370 0.78911 0.83359 0.78128 1.20860 1.21633 1.21094 1.19149 0.92568 0.84771 1.41785 0.91713 1.44080 1.35809 1.01674 1.49967 1.20729 0.88932 0.97858 0.87674 1.22540 1.00449 0.94794 1.00857 1.21054 0.98606 0.88013 0.87295 1.46198 1.68822 1.06147 1.15688 1.17136 0.77234 0.81645 0.86608 1.90749 1.47130 1.77725 1.25675 1.21453 1.18802 0.93261 0.95126 1.23083 0.96648 0.92578 0.91964 1.45953 1.53322 1.03736 1.13813 0.71019 1.77343 1.21084 1.09517 1.01894 1.21675 0.96278 0.90643 0.91624 1.17952 0.96799 0.92758 0.92070 1.22635 0.95344 1.00862 0.93346 1.22722 0.98242 0.89511 0.96096 1.67590 1.09061 1.13391 1.28802 1.22576 0.94132 0.99841 0.90731 1.22148 1.01030 0.94063 0.99250 1.22372 0.97076 0.99597 0.98845 1.20874 0.97921 0.86499 0.92649 0.93535 0.96078 0.89082 0.92752 0.92269 0.89777 0.77574 0.79236 0.82559 0.82370 0.82736 0.84802 0.92460 0.92625 0.96128 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 11.19 55.49 0.62 -25.00 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.43 2.99 -172.32 -0.52 -14.94 16 10 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 11 C -0.15 -2.50 5.55 -26.61 -0.15 -2.65 16 12 C 0.15 2.48 2.42 -67.88 -0.16 2.31 16 13 N -0.72 -9.03 5.07 -54.87 -0.28 -9.31 16 14 C 0.59 8.01 7.68 -12.57 -0.10 7.91 16 15 O -0.53 -8.89 12.15 5.27 0.06 -8.83 16 16 C -0.27 -3.06 6.28 -102.95 -0.65 -3.70 16 17 C 0.11 0.76 11.50 -16.64 -0.19 0.57 16 18 N -0.46 -3.18 7.20 30.81 0.22 -2.96 16 19 H 0.45 1.35 8.96 -182.84 -1.64 -0.29 16 20 N -0.28 -2.97 12.64 34.57 0.44 -2.54 16 21 C 0.17 2.03 6.98 -80.57 -0.56 1.47 16 22 C 0.01 0.18 5.75 -104.59 -0.60 -0.42 16 23 C -0.10 -1.33 7.90 -39.09 -0.31 -1.63 16 24 C 0.09 1.14 11.17 -17.61 -0.20 0.94 16 25 N -0.48 -6.18 10.35 -13.35 -0.14 -6.32 16 26 C 0.08 0.92 11.17 -17.61 -0.20 0.72 16 27 C -0.14 -1.60 9.88 -39.10 -0.39 -1.98 16 28 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 29 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 2.30 6.07 -51.93 -0.31 1.99 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 36 H 0.39 3.66 7.56 -40.82 -0.31 3.35 16 37 H 0.19 0.55 7.48 -52.48 -0.39 0.16 16 38 H 0.16 2.17 5.77 -52.49 -0.30 1.87 16 39 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -33.96 371.31 -10.06 -44.02 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.12 Total: 3.09 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -3.92 Total: 1.01 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.35 Total: -61.07 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.06 Total: -8.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.96 -10.06 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.094 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds