Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48499 * 109.47278 * 240.00256 * 3 2 1 5 5 H 1.48504 * 109.46858 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46805 * 120.00303 * 3 2 1 7 7 C 1.38812 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 163.07776 * 7 2 1 9 9 N 1.36936 * 120.00325 * 343.07697 * 7 2 1 10 10 C 1.46928 * 120.62826 * 331.84372 * 9 7 2 11 11 C 1.53188 * 108.77621 * 233.58754 * 10 9 7 12 12 C 1.53043 * 109.31254 * 305.36453 * 11 10 9 13 13 N 1.46507 * 109.45819 * 181.38637 * 12 11 10 14 14 C 1.34774 * 119.99718 * 155.00233 * 13 12 11 15 15 O 1.21609 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.47316 * 119.99967 * 179.97438 * 14 13 12 17 17 C 1.37923 * 126.80365 * 0.17975 * 16 14 13 18 18 N 1.34189 * 107.89414 * 180.24356 * 17 16 14 19 19 H 0.97002 * 125.16692 * 179.71098 * 18 17 16 20 20 N 1.39777 * 109.66464 * 359.73911 * 18 17 16 21 21 C 1.31370 * 109.06973 * 0.02562 * 20 18 17 22 22 C 1.48276 * 126.50871 * 179.97438 * 21 20 18 23 23 C 1.39814 * 120.90582 * 145.02871 * 22 21 20 24 24 C 1.37970 * 119.01237 * 180.02562 * 23 22 21 25 25 N 1.31927 * 120.88387 * 0.02562 * 24 23 22 26 26 C 1.31924 * 122.01914 * 359.97438 * 25 24 23 27 27 C 1.37966 * 120.88417 * 0.02562 * 26 25 24 28 28 C 1.53041 * 109.53588 * 61.37017 * 12 11 10 29 29 C 1.46920 * 120.63171 * 151.82530 * 9 7 2 30 30 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58218 * 113.80150 * 10 9 7 32 32 H 1.08996 * 109.70304 * 353.44684 * 10 9 7 33 33 H 1.09005 * 109.49478 * 185.41427 * 11 10 9 34 34 H 1.08999 * 109.52783 * 65.33622 * 11 10 9 35 35 H 1.08998 * 109.45977 * 301.35846 * 12 11 10 36 36 H 0.97001 * 119.99498 * 335.00030 * 13 12 11 37 37 H 1.08008 * 126.05359 * 359.96230 * 17 16 14 38 38 H 1.07999 * 120.49218 * 359.97438 * 23 22 21 39 39 H 1.07994 * 119.55391 * 180.27262 * 24 23 22 40 40 H 1.07996 * 119.55653 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.49026 * 180.02562 * 27 26 25 42 42 H 1.08998 * 109.49852 * 58.58250 * 28 12 11 43 43 H 1.08997 * 109.49633 * 178.68256 * 28 12 11 44 44 H 1.09005 * 109.58856 * 246.19761 * 29 9 7 45 45 H 1.09003 * 109.59130 * 6.48358 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3441 10 6 0.2259 -2.3410 1.2658 11 6 0.4972 -3.3210 2.4115 12 6 0.8117 -4.7023 1.8323 13 7 1.0392 -5.6500 2.9261 14 6 0.8358 -6.9676 2.7293 15 8 0.4638 -7.3700 1.6436 16 6 1.0651 -7.9207 3.8290 17 6 1.4821 -7.6206 5.1089 18 7 1.5713 -8.7711 5.7939 19 1 1.8471 -8.8497 6.7205 20 7 1.2068 -9.8390 4.9690 21 6 0.8922 -9.3756 3.7807 22 6 0.4513 -10.1733 2.6111 23 6 -0.4931 -9.6683 1.7123 24 6 -0.8758 -10.4442 0.6376 25 7 -0.3636 -11.6460 0.4535 26 6 0.5296 -12.1594 1.2775 27 6 0.9677 -11.4513 2.3776 28 6 2.0672 -4.6181 0.9612 29 6 1.8137 -3.6527 -0.2010 30 1 -0.4850 0.8401 0.0004 31 1 -0.6771 -2.6411 0.7344 32 1 0.0966 -1.3360 1.6675 33 1 -0.3834 -3.3864 3.0505 34 1 1.3467 -2.9703 2.9976 35 1 -0.0284 -5.0418 1.2264 36 1 1.3363 -5.3290 3.7919 37 1 1.7026 -6.6347 5.4909 38 1 -0.9174 -8.6859 1.8577 39 1 -1.6014 -10.0610 -0.0646 40 1 0.9230 -13.1472 1.0885 41 1 1.6995 -11.8776 3.0478 42 1 2.9021 -4.2549 1.5604 43 1 2.3040 -5.6067 0.5679 44 1 1.0400 -4.0599 -0.8521 45 1 2.7331 -3.5125 -0.7695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 74.359125 kcal Electronic energy + Delta-G solvation = -29006.417759 eV Core-core repulsion = 25025.022619 eV Total energy + Delta-G solvation = -3981.395140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.31525 -40.74082 -40.51883 -38.77184 -35.98276 -34.65136 -33.94936 -32.25168 -32.07644 -31.57183 -31.51341 -30.49191 -26.95375 -25.36605 -24.66728 -24.33399 -23.82651 -23.09850 -21.53655 -21.16524 -20.70728 -19.55144 -18.64761 -17.66831 -17.40587 -17.07573 -17.01798 -16.77744 -16.50572 -16.09732 -15.60885 -15.36482 -15.30443 -15.06219 -14.90768 -14.73134 -14.66239 -14.37318 -14.15876 -14.03580 -13.70548 -13.18803 -12.97907 -12.70541 -12.55479 -12.52352 -12.21706 -12.10702 -12.01078 -11.83507 -11.55950 -11.49657 -11.30644 -10.89544 -10.53163 -10.45644 -10.23786 -10.05010 -9.89046 -9.67535 -8.68136 -7.86046 -5.31576 -0.17611 0.27317 0.51494 1.20294 1.50329 1.51300 1.58780 1.67389 2.26243 2.42993 2.53579 2.92170 3.16096 3.29910 3.52189 3.60800 3.69225 3.92310 3.99415 4.07610 4.14003 4.16749 4.23258 4.35072 4.37266 4.41356 4.51041 4.68882 4.70999 4.80441 4.86632 4.90550 4.96633 5.09607 5.11046 5.20414 5.20676 5.34071 5.34204 5.51052 5.63247 5.66914 5.75611 5.77080 6.17092 6.34747 6.40958 6.74294 7.02804 7.16838 7.40439 7.86628 8.39174 9.20727 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002475 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.602401 B =11311.474240 C =12317.034326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.167 3.833 13 N -0.705 5.705 14 C 0.587 3.413 15 O -0.572 6.572 16 C -0.307 4.307 17 C 0.146 3.854 18 N -0.442 5.442 19 H 0.464 0.536 20 N -0.293 5.293 21 C 0.148 3.852 22 C 0.001 3.999 23 C -0.115 4.115 24 C 0.079 3.921 25 N -0.500 5.500 26 C 0.083 3.917 27 C -0.144 4.144 28 C -0.122 4.122 29 C 0.144 3.856 30 H 0.251 0.749 31 H -0.007 1.007 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.411 0.589 37 H 0.241 0.759 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.187 0.813 41 H 0.153 0.847 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.005 0.995 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 -19.327 16.489 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.062 3.938 13 N -0.356 5.356 14 C 0.376 3.624 15 O -0.453 6.453 16 C -0.322 4.322 17 C -0.006 4.006 18 N -0.150 5.150 19 H 0.313 0.687 20 N -0.115 5.115 21 C -0.020 4.020 22 C -0.009 4.009 23 C -0.136 4.136 24 C -0.077 4.077 25 N -0.210 5.210 26 C -0.073 4.073 27 C -0.165 4.165 28 C -0.163 4.163 29 C 0.018 3.982 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.248 0.752 37 H 0.257 0.743 38 H 0.161 0.839 39 H 0.185 0.815 40 H 0.203 0.797 41 H 0.170 0.830 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.023 0.977 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.078 -20.984 15.762 26.424 hybrid contribution 0.576 2.476 0.532 2.598 sum 3.654 -18.508 16.294 24.928 Atomic orbital electron populations 1.70176 1.06655 1.26000 1.55272 1.25798 0.96020 1.01461 1.01121 0.85341 0.77545 0.79169 0.78363 1.20491 1.22106 1.20010 1.19478 0.92841 0.85895 1.41242 0.91624 1.44342 1.35984 1.02100 1.50799 1.20568 0.87583 0.97831 0.88842 1.22244 1.02098 0.93541 0.98791 1.20591 0.96989 0.88241 0.87937 1.45792 1.68908 1.05316 1.15569 1.17465 0.76282 0.81895 0.86798 1.90745 1.48698 1.78329 1.27496 1.21251 1.22337 0.92391 0.96244 1.23706 0.92797 0.94123 0.89994 1.46017 1.51557 1.03025 1.14394 0.68652 1.77282 1.21477 1.11013 1.01736 1.21698 0.97164 0.91263 0.91908 1.18235 0.96634 0.93580 0.92486 1.22541 0.96297 1.00527 0.94201 1.22913 0.98690 0.89731 0.96339 1.67636 1.10081 1.13535 1.29733 1.23126 0.93200 1.00901 0.90123 1.22375 1.01074 0.93522 0.99502 1.22152 0.98022 0.98367 0.97712 1.20957 0.97161 0.86070 0.93991 0.94020 0.98906 0.91929 0.90268 0.90921 0.92242 0.75173 0.74341 0.83910 0.81453 0.79653 0.82958 0.91489 0.92475 0.97656 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.41 11.19 21.65 0.24 -54.17 16 2 C -0.05 -2.66 4.92 84.86 0.42 -2.24 16 3 Si 0.97 43.80 29.59 68.60 2.03 45.83 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.26 -14.31 9.58 84.03 0.81 -13.51 16 8 H 0.07 3.47 7.89 -2.91 -0.02 3.44 16 9 N -0.61 -30.10 2.99 -699.09 -2.09 -32.19 16 10 C 0.18 8.20 5.30 86.36 0.46 8.66 16 11 C -0.13 -4.16 5.55 30.67 0.17 -3.99 16 12 C 0.17 5.23 2.42 45.02 0.11 5.34 16 13 N -0.71 -15.98 5.07 -445.77 -2.26 -18.24 16 14 C 0.59 15.28 7.68 86.63 0.66 15.95 16 15 O -0.57 -19.36 12.15 -4.06 -0.05 -19.41 16 16 C -0.31 -6.23 6.28 -18.78 -0.12 -6.35 16 17 C 0.15 1.41 11.50 84.26 0.97 2.38 16 18 N -0.44 -4.32 7.20 -56.43 -0.41 -4.72 16 19 H 0.46 0.69 8.96 -213.53 -1.91 -1.22 16 20 N -0.29 -5.60 12.64 -44.54 -0.56 -6.16 16 21 C 0.15 3.42 6.98 44.07 0.31 3.73 16 22 C 0.00 0.02 5.75 -19.85 -0.11 -0.09 16 23 C -0.11 -3.14 7.90 22.59 0.18 -2.97 16 24 C 0.08 2.07 11.17 84.61 0.95 3.01 16 25 N -0.50 -12.98 10.35 -196.15 -2.03 -15.01 16 26 C 0.08 1.75 11.17 84.61 0.95 2.70 16 27 C -0.14 -3.08 9.88 22.58 0.22 -2.86 16 28 C -0.12 -4.19 5.65 30.67 0.17 -4.02 16 29 C 0.14 6.16 6.52 86.37 0.56 6.73 16 30 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 33 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 36 H 0.41 5.92 7.56 -92.71 -0.70 5.22 16 37 H 0.24 -0.22 7.48 -2.91 -0.02 -0.25 16 38 H 0.14 4.25 5.77 -2.91 -0.02 4.24 16 39 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 40 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 Total: -1.00 -77.53 371.31 0.00 -77.52 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -1.56 Total: 14.08 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 6.70 Total: 12.47 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -7.11 Total: -130.49 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.05 Total: -19.41 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -77.53 0.00 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.880 kcal (2) G-P(sol) polarization free energy of solvation -77.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds