Wall clock time and date at job start Sat Apr 11 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00019 * 2 1 4 4 H 1.48495 * 109.47053 * 272.93872 * 3 2 1 5 5 H 1.48493 * 109.47182 * 32.94256 * 3 2 1 6 6 H 1.48498 * 109.47006 * 152.94202 * 3 2 1 7 7 C 1.38819 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99856 * 339.34938 * 7 2 1 9 9 N 1.36938 * 119.99711 * 159.34293 * 7 2 1 10 10 C 1.46920 * 120.63300 * 332.63489 * 9 7 2 11 11 C 1.53193 * 108.77636 * 233.58446 * 10 9 7 12 12 C 1.53043 * 109.31315 * 305.36616 * 11 10 9 13 13 N 1.46493 * 109.46332 * 181.38304 * 12 11 10 14 14 C 1.34773 * 120.00390 * 155.00141 * 13 12 11 15 15 O 1.21513 * 119.99882 * 0.02562 * 14 13 12 16 16 C 1.48182 * 120.00190 * 180.02562 * 14 13 12 17 17 C 1.39128 * 119.68991 * 179.97438 * 16 14 13 18 18 C 1.39289 * 118.97320 * 180.02562 * 17 16 14 19 19 N 1.39938 * 120.82522 * 179.97438 * 18 17 16 20 20 C 1.35815 * 126.10548 * 179.71236 * 19 18 17 21 21 C 1.35287 * 107.62254 * 179.83876 * 20 19 18 22 22 C 1.39952 * 107.96131 * 0.42679 * 21 20 19 23 23 N 1.30827 * 108.36644 * 359.73568 * 22 21 20 24 24 C 1.39282 * 118.35263 * 0.02562 * 18 17 16 25 25 C 1.38343 * 119.27671 * 0.02562 * 24 18 17 26 26 N 1.31587 * 120.98044 * 359.97438 * 25 24 18 27 27 C 1.53046 * 109.53569 * 61.36051 * 12 11 10 28 28 C 1.46928 * 120.62398 * 152.60775 * 9 7 2 29 29 H 0.97001 * 119.99912 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58859 * 113.80136 * 10 9 7 31 31 H 1.08998 * 109.70407 * 353.44403 * 10 9 7 32 32 H 1.08995 * 109.49835 * 185.41518 * 11 10 9 33 33 H 1.08999 * 109.52387 * 65.33109 * 11 10 9 34 34 H 1.08999 * 109.45948 * 301.35694 * 12 11 10 35 35 H 0.97004 * 119.99930 * 335.00222 * 13 12 11 36 36 H 1.07997 * 120.51771 * 359.97327 * 17 16 14 37 37 H 1.08004 * 126.19106 * 0.02562 * 20 19 18 38 38 H 1.07995 * 126.02274 * 180.15298 * 21 20 19 39 39 H 1.08007 * 125.81719 * 179.71113 * 22 21 20 40 40 H 1.08002 * 120.35826 * 180.02562 * 24 18 17 41 41 H 1.08002 * 119.50595 * 180.26384 * 25 24 18 42 42 H 1.09004 * 109.49379 * 58.58980 * 27 12 11 43 43 H 1.08999 * 109.49613 * 178.68068 * 27 12 11 44 44 H 1.08999 * 109.58713 * 246.19858 * 28 9 7 45 45 H 1.09000 * 109.58912 * 6.48877 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4355 2.0823 -1.3982 5 1 1.4802 2.6339 0.7613 6 1 3.5775 1.4230 0.6369 7 6 2.0103 -1.2022 0.0005 8 1 1.5223 -2.1072 0.3308 9 7 3.3136 -1.2405 -0.4178 10 6 3.8173 -0.2595 -1.3887 11 6 4.4622 -1.0098 -2.5583 12 6 5.5290 -1.9659 -2.0197 13 7 6.1708 -2.6611 -3.1381 14 6 7.4212 -3.1454 -3.0023 15 8 8.0160 -3.0058 -1.9519 16 6 8.0706 -3.8481 -4.1338 17 6 9.3618 -4.3450 -3.9866 18 6 9.9581 -5.0025 -5.0600 19 7 11.2552 -5.5170 -4.9547 20 6 11.9351 -6.1786 -5.9267 21 6 13.1499 -6.5036 -5.4279 22 6 13.2143 -6.0372 -4.1100 23 7 12.0818 -5.4470 -3.8258 24 6 9.2318 -5.1343 -6.2411 25 6 7.9525 -4.6121 -6.3105 26 7 7.4156 -3.9958 -5.2793 27 6 4.8752 -2.9908 -1.0900 28 6 4.2350 -2.2630 0.0963 29 1 -0.4850 0.8401 -0.0004 30 1 4.5598 0.3796 -0.9108 31 1 2.9923 0.3506 -1.7564 32 1 4.9247 -0.2947 -3.2385 33 1 3.6999 -1.5782 -3.0912 34 1 6.2780 -1.3997 -1.4662 35 1 5.6959 -2.7729 -3.9765 36 1 9.8938 -4.2221 -3.0549 37 1 11.5728 -6.4018 -6.9193 38 1 13.9308 -7.0339 -5.9527 39 1 14.0554 -6.1462 -3.4413 40 1 9.6626 -5.6386 -7.0935 41 1 7.3844 -4.7160 -7.2232 42 1 4.1087 -3.5406 -1.6362 43 1 5.6316 -3.6857 -0.7252 44 1 5.0115 -1.7872 0.6953 45 1 3.6844 -2.9753 0.7108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609858027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:52 Heat of formation + Delta-G solvation = 117.428555 kcal Electronic energy + Delta-G solvation = -28390.931049 eV Core-core repulsion = 24411.403540 eV Total energy + Delta-G solvation = -3979.527509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.10450 -40.77209 -39.34060 -37.57798 -35.00612 -34.52235 -32.35853 -31.93387 -30.95031 -30.42122 -30.28335 -29.91480 -25.81296 -24.71430 -24.23834 -22.95508 -22.39718 -21.63336 -21.31117 -20.40819 -19.71041 -18.89816 -17.49020 -16.94367 -16.41386 -16.38397 -15.94830 -15.74810 -15.41117 -15.18233 -14.93191 -14.55126 -14.14713 -14.08857 -14.02114 -13.87775 -13.72276 -13.34156 -13.04820 -12.89073 -12.55485 -12.35654 -11.98070 -11.77597 -11.45701 -11.32552 -11.00476 -10.81345 -10.54709 -10.49396 -10.27596 -10.13560 -9.95944 -9.84920 -9.77189 -9.70676 -9.45011 -8.97766 -8.82835 -8.61742 -6.97625 -5.93444 -3.29153 0.01067 0.36552 1.57573 1.69433 2.23371 2.57597 2.99007 3.32806 3.50361 3.50984 3.54066 3.75392 3.89015 4.02806 4.29920 4.33478 4.53111 4.54376 4.74458 4.89343 4.97398 5.02288 5.05938 5.17589 5.27529 5.34284 5.36171 5.41137 5.48190 5.68083 5.83968 5.89055 6.02027 6.05834 6.10261 6.18879 6.33080 6.41560 6.45877 6.59683 6.65511 6.68169 6.71411 6.93876 7.02293 7.21422 7.61590 7.97547 8.17539 8.34499 8.95349 9.73403 10.11070 11.22491 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.002040 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.223365 B =13723.721668 C =14095.010526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.140 4.140 12 C 0.148 3.852 13 N -0.699 5.699 14 C 0.566 3.434 15 O -0.528 6.528 16 C 0.113 3.887 17 C -0.118 4.118 18 C 0.203 3.797 19 N -0.332 5.332 20 C 0.053 3.947 21 C -0.253 4.253 22 C 0.061 3.939 23 N -0.279 5.279 24 C -0.182 4.182 25 C 0.130 3.870 26 N -0.465 5.465 27 C -0.142 4.142 28 C 0.151 3.849 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.409 0.591 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.158 0.842 39 H 0.194 0.806 40 H 0.147 0.853 41 H 0.175 0.825 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.026 0.974 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.871 -13.514 -17.833 33.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.045 3.955 13 N -0.349 5.349 14 C 0.350 3.650 15 O -0.404 6.404 16 C -0.025 4.025 17 C -0.141 4.141 18 C 0.101 3.899 19 N -0.108 5.108 20 C -0.087 4.087 21 C -0.281 4.281 22 C -0.127 4.127 23 N -0.097 5.097 24 C -0.205 4.205 25 C -0.029 4.029 26 N -0.178 5.178 27 C -0.182 4.182 28 C 0.025 3.975 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.244 0.756 36 H 0.180 0.820 37 H 0.199 0.801 38 H 0.176 0.824 39 H 0.211 0.789 40 H 0.164 0.836 41 H 0.192 0.808 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.527 -12.313 -16.179 31.095 hybrid contribution 1.659 0.005 -1.188 2.040 sum 25.185 -12.309 -17.367 32.976 Atomic orbital electron populations 1.69838 1.05712 1.26517 1.53064 1.25289 0.95243 0.97566 0.99563 0.86971 0.80138 0.84696 0.77017 1.21625 1.23130 1.19483 1.18930 0.84908 0.94792 1.40030 0.89632 1.44404 1.08720 1.33384 1.46469 1.21305 0.97311 0.92034 0.89032 1.22350 0.97455 0.98398 0.99801 1.21105 0.94478 0.93222 0.86669 1.46129 1.14672 1.56262 1.17791 1.17741 0.82104 0.79176 0.86014 1.90818 1.64236 1.57776 1.27562 1.21226 0.91329 0.97145 0.92833 1.21847 0.95303 0.96969 0.99944 1.17654 0.81930 0.95271 0.95006 1.45968 1.10824 1.43351 1.10676 1.22831 0.93273 0.97003 0.95631 1.21699 0.98785 1.11128 0.96537 1.24235 0.96187 0.95853 0.96474 1.77603 1.02847 1.23310 1.05932 1.22026 0.96839 1.04565 0.97117 1.22697 0.91388 0.91791 0.97058 1.67624 1.36607 1.14186 0.99368 1.22394 0.99485 0.97959 0.98339 1.20897 0.92346 0.91354 0.92952 0.92795 0.95446 0.90447 0.92124 0.90943 0.89676 0.75564 0.81980 0.80147 0.82411 0.78930 0.83557 0.80824 0.91651 0.92205 0.95637 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.84 13.97 55.49 0.78 -27.07 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 22.43 24.35 -169.99 -4.14 18.29 16 4 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 7 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.61 -14.46 2.77 -172.32 -0.48 -14.94 16 10 C 0.13 2.81 4.20 -3.71 -0.02 2.79 16 11 C -0.14 -2.43 5.55 -26.61 -0.15 -2.58 16 12 C 0.15 2.48 2.42 -67.89 -0.16 2.32 16 13 N -0.70 -10.08 5.07 -54.60 -0.28 -10.35 16 14 C 0.57 8.60 7.78 -12.18 -0.09 8.50 16 15 O -0.53 -9.61 15.98 5.35 0.09 -9.53 16 16 C 0.11 1.42 6.75 -83.04 -0.56 0.86 16 17 C -0.12 -1.42 9.26 -38.86 -0.36 -1.78 16 18 C 0.20 1.96 6.73 -83.38 -0.56 1.40 16 19 N -0.33 -3.13 3.81 -10.41 -0.04 -3.17 16 20 C 0.05 0.33 10.86 -16.84 -0.18 0.14 16 21 C -0.25 -1.43 10.80 -39.99 -0.43 -1.86 16 22 C 0.06 0.45 12.02 -17.34 -0.21 0.24 16 23 N -0.28 -3.01 11.97 30.64 0.37 -2.65 16 24 C -0.18 -1.18 9.54 -39.15 -0.37 -1.55 16 25 C 0.13 0.92 11.17 -17.62 -0.20 0.72 16 26 N -0.47 -4.90 9.54 -9.87 -0.09 -4.99 16 27 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 28 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 31 H 0.08 1.82 4.50 -51.93 -0.23 1.59 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 35 H 0.41 5.18 7.93 -40.82 -0.32 4.85 16 36 H 0.16 2.21 7.38 -52.49 -0.39 1.82 16 37 H 0.18 0.39 7.13 -52.48 -0.37 0.02 16 38 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.19 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.15 0.41 6.88 -52.49 -0.36 0.05 16 41 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -35.43 369.95 -7.78 -43.21 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.85 Total: 2.83 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.71 Total: 2.78 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.25 Total: -63.16 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.43 -7.78 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609858027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.640 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds