Wall clock time and date at job start Sat Apr 11 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00019 * 2 1 4 4 H 1.48495 * 109.47053 * 272.93872 * 3 2 1 5 5 H 1.48493 * 109.47182 * 32.94256 * 3 2 1 6 6 H 1.48498 * 109.47006 * 152.94202 * 3 2 1 7 7 C 1.38819 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99856 * 339.34938 * 7 2 1 9 9 N 1.36938 * 119.99711 * 159.34293 * 7 2 1 10 10 C 1.46920 * 120.63300 * 332.63489 * 9 7 2 11 11 C 1.53193 * 108.77636 * 233.58446 * 10 9 7 12 12 C 1.53043 * 109.31315 * 305.36616 * 11 10 9 13 13 N 1.46493 * 109.46332 * 181.38304 * 12 11 10 14 14 C 1.34773 * 120.00390 * 155.00141 * 13 12 11 15 15 O 1.21513 * 119.99882 * 0.02562 * 14 13 12 16 16 C 1.48182 * 120.00190 * 180.02562 * 14 13 12 17 17 C 1.39128 * 119.68991 * 179.97438 * 16 14 13 18 18 C 1.39289 * 118.97320 * 180.02562 * 17 16 14 19 19 N 1.39938 * 120.82522 * 179.97438 * 18 17 16 20 20 C 1.35815 * 126.10548 * 179.71236 * 19 18 17 21 21 C 1.35287 * 107.62254 * 179.83876 * 20 19 18 22 22 C 1.39952 * 107.96131 * 0.42679 * 21 20 19 23 23 N 1.30827 * 108.36644 * 359.73568 * 22 21 20 24 24 C 1.39282 * 118.35263 * 0.02562 * 18 17 16 25 25 C 1.38343 * 119.27671 * 0.02562 * 24 18 17 26 26 N 1.31587 * 120.98044 * 359.97438 * 25 24 18 27 27 C 1.53046 * 109.53569 * 61.36051 * 12 11 10 28 28 C 1.46928 * 120.62398 * 152.60775 * 9 7 2 29 29 H 0.97001 * 119.99912 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58859 * 113.80136 * 10 9 7 31 31 H 1.08998 * 109.70407 * 353.44403 * 10 9 7 32 32 H 1.08995 * 109.49835 * 185.41518 * 11 10 9 33 33 H 1.08999 * 109.52387 * 65.33109 * 11 10 9 34 34 H 1.08999 * 109.45948 * 301.35694 * 12 11 10 35 35 H 0.97004 * 119.99930 * 335.00222 * 13 12 11 36 36 H 1.07997 * 120.51771 * 359.97327 * 17 16 14 37 37 H 1.08004 * 126.19106 * 0.02562 * 20 19 18 38 38 H 1.07995 * 126.02274 * 180.15298 * 21 20 19 39 39 H 1.08007 * 125.81719 * 179.71113 * 22 21 20 40 40 H 1.08002 * 120.35826 * 180.02562 * 24 18 17 41 41 H 1.08002 * 119.50595 * 180.26384 * 25 24 18 42 42 H 1.09004 * 109.49379 * 58.58980 * 27 12 11 43 43 H 1.08999 * 109.49613 * 178.68068 * 27 12 11 44 44 H 1.08999 * 109.58713 * 246.19858 * 28 9 7 45 45 H 1.09000 * 109.58912 * 6.48877 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4355 2.0823 -1.3982 5 1 1.4802 2.6339 0.7613 6 1 3.5775 1.4230 0.6369 7 6 2.0103 -1.2022 0.0005 8 1 1.5223 -2.1072 0.3308 9 7 3.3136 -1.2405 -0.4178 10 6 3.8173 -0.2595 -1.3887 11 6 4.4622 -1.0098 -2.5583 12 6 5.5290 -1.9659 -2.0197 13 7 6.1708 -2.6611 -3.1381 14 6 7.4212 -3.1454 -3.0023 15 8 8.0160 -3.0058 -1.9519 16 6 8.0706 -3.8481 -4.1338 17 6 9.3618 -4.3450 -3.9866 18 6 9.9581 -5.0025 -5.0600 19 7 11.2552 -5.5170 -4.9547 20 6 11.9351 -6.1786 -5.9267 21 6 13.1499 -6.5036 -5.4279 22 6 13.2143 -6.0372 -4.1100 23 7 12.0818 -5.4470 -3.8258 24 6 9.2318 -5.1343 -6.2411 25 6 7.9525 -4.6121 -6.3105 26 7 7.4156 -3.9958 -5.2793 27 6 4.8752 -2.9908 -1.0900 28 6 4.2350 -2.2630 0.0963 29 1 -0.4850 0.8401 -0.0004 30 1 4.5598 0.3796 -0.9108 31 1 2.9923 0.3506 -1.7564 32 1 4.9247 -0.2947 -3.2385 33 1 3.6999 -1.5782 -3.0912 34 1 6.2780 -1.3997 -1.4662 35 1 5.6959 -2.7729 -3.9765 36 1 9.8938 -4.2221 -3.0549 37 1 11.5728 -6.4018 -6.9193 38 1 13.9308 -7.0339 -5.9527 39 1 14.0554 -6.1462 -3.4413 40 1 9.6626 -5.6386 -7.0935 41 1 7.3844 -4.7160 -7.2232 42 1 4.1087 -3.5406 -1.6362 43 1 5.6316 -3.6857 -0.7252 44 1 5.0115 -1.7872 0.6953 45 1 3.6844 -2.9753 0.7108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609858027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:51 Heat of formation + Delta-G solvation = 91.774797 kcal Electronic energy + Delta-G solvation = -28392.043480 eV Core-core repulsion = 24411.403540 eV Total energy + Delta-G solvation = -3980.639940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.65969 -41.63494 -40.43165 -39.10655 -36.20889 -35.51875 -34.08904 -32.88973 -32.02967 -31.87842 -31.23144 -30.81786 -27.24086 -25.80092 -25.10028 -24.51432 -23.62320 -22.78045 -21.86402 -21.40250 -21.17790 -19.76499 -18.84729 -18.22168 -17.68818 -17.08492 -17.01300 -16.66661 -16.54256 -16.15849 -15.99427 -15.94875 -15.37800 -15.28294 -15.08411 -14.91508 -14.64184 -14.52796 -14.43499 -14.17868 -13.86002 -13.72216 -13.49122 -13.18384 -12.62009 -12.60130 -12.30081 -12.09627 -12.05595 -11.86026 -11.82681 -11.59655 -11.51132 -11.35009 -10.86027 -10.69402 -10.51772 -10.39279 -10.11038 -9.52367 -8.98020 -8.16176 -5.48770 -0.67321 -0.32217 1.01715 1.16881 1.29642 1.42891 1.51678 1.62783 1.79659 1.90837 2.41498 2.69377 2.98551 3.04889 3.23557 3.32071 3.51167 3.70503 3.74805 3.86968 3.92316 4.00506 4.06069 4.18499 4.28346 4.34904 4.45578 4.51924 4.56326 4.59648 4.66210 4.68771 4.80724 4.86737 4.89562 4.97550 5.00533 5.03527 5.13690 5.28432 5.34425 5.42029 5.57272 5.86171 5.97998 6.12566 6.31837 6.51184 6.66753 6.89666 7.04409 7.60470 8.01211 9.03471 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029183 B = 0.002040 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.223365 B =13723.721668 C =14095.010526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.311 1.311 6 H -0.266 1.266 7 C -0.249 4.249 8 H 0.053 0.947 9 N -0.618 5.618 10 C 0.122 3.878 11 C -0.127 4.127 12 C 0.157 3.843 13 N -0.689 5.689 14 C 0.565 3.435 15 O -0.568 6.568 16 C 0.095 3.905 17 C -0.138 4.138 18 C 0.193 3.807 19 N -0.348 5.348 20 C 0.054 3.946 21 C -0.255 4.255 22 C 0.058 3.942 23 N -0.343 5.343 24 C -0.155 4.155 25 C 0.135 3.865 26 N -0.478 5.478 27 C -0.129 4.129 28 C 0.148 3.852 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.419 0.581 36 H 0.131 0.869 37 H 0.225 0.775 38 H 0.189 0.811 39 H 0.216 0.784 40 H 0.195 0.805 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.344 -14.538 -21.968 37.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.240 1.240 6 H -0.191 1.191 7 C -0.378 4.378 8 H 0.071 0.929 9 N -0.343 5.343 10 C -0.003 4.003 11 C -0.166 4.166 12 C 0.053 3.947 13 N -0.339 5.339 14 C 0.350 3.650 15 O -0.447 6.447 16 C -0.042 4.042 17 C -0.161 4.161 18 C 0.091 3.909 19 N -0.125 5.125 20 C -0.085 4.085 21 C -0.283 4.283 22 C -0.130 4.130 23 N -0.161 5.161 24 C -0.177 4.177 25 C -0.024 4.024 26 N -0.191 5.191 27 C -0.169 4.169 28 C 0.022 3.978 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.257 0.743 36 H 0.149 0.851 37 H 0.241 0.759 38 H 0.206 0.794 39 H 0.232 0.768 40 H 0.212 0.788 41 H 0.236 0.764 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.051 -13.358 -20.351 35.654 hybrid contribution 1.018 0.135 0.017 1.027 sum 27.069 -13.223 -20.334 36.346 Atomic orbital electron populations 1.69960 1.07310 1.27226 1.55551 1.25883 0.95842 1.00811 1.00262 0.85955 0.78570 0.80336 0.77877 1.19452 1.23965 1.19068 1.18853 0.86516 0.93652 1.38783 0.92903 1.44503 1.07818 1.34502 1.47476 1.21373 0.96959 0.92027 0.89988 1.22162 0.97443 0.98693 0.98341 1.20818 0.93967 0.92824 0.87124 1.45878 1.14566 1.55917 1.17499 1.18172 0.81841 0.78561 0.86385 1.90786 1.65140 1.59329 1.29450 1.20667 0.91578 0.98897 0.93094 1.21634 0.95475 0.98924 1.00098 1.17897 0.82558 0.95077 0.95363 1.46089 1.10828 1.44376 1.11232 1.23652 0.93003 0.95355 0.96493 1.22150 0.99572 1.10789 0.95756 1.24826 0.95789 0.94493 0.97891 1.77574 1.04592 1.25946 1.08014 1.22544 0.95915 1.02424 0.96857 1.23514 0.91881 0.89866 0.97176 1.67603 1.36897 1.15231 0.99374 1.22212 0.99297 0.97911 0.97445 1.20999 0.91859 0.90745 0.94160 0.92897 0.94924 0.92131 0.89204 0.90726 0.90885 0.74269 0.85063 0.75876 0.79382 0.76784 0.78774 0.76407 0.91740 0.91788 0.95146 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.12 13.97 21.65 0.30 -59.82 16 2 C -0.03 -1.95 5.23 84.86 0.44 -1.50 16 3 Si 0.94 46.81 24.35 68.60 1.67 48.48 16 4 H -0.27 -12.31 6.62 99.48 0.66 -11.66 16 5 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 6 H -0.27 -12.87 6.64 99.48 0.66 -12.21 16 7 C -0.25 -14.25 10.04 84.03 0.84 -13.41 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 9 N -0.62 -29.62 2.77 -699.10 -1.94 -31.56 16 10 C 0.12 5.15 4.20 86.36 0.36 5.51 16 11 C -0.13 -4.17 5.55 30.67 0.17 -4.00 16 12 C 0.16 5.12 2.42 45.02 0.11 5.22 16 13 N -0.69 -19.29 5.07 -444.96 -2.25 -21.55 16 14 C 0.57 17.40 7.78 86.89 0.68 18.08 16 15 O -0.57 -21.62 15.98 -3.76 -0.06 -21.68 16 16 C 0.09 2.36 6.75 41.86 0.28 2.65 16 17 C -0.14 -3.43 9.26 22.74 0.21 -3.22 16 18 C 0.19 3.42 6.73 38.35 0.26 3.68 16 19 N -0.35 -6.06 3.81 -186.86 -0.71 -6.77 16 20 C 0.05 0.47 10.86 83.40 0.91 1.37 16 21 C -0.26 -2.13 10.80 22.00 0.24 -1.89 16 22 C 0.06 0.79 12.02 85.26 1.02 1.81 16 23 N -0.34 -7.50 11.97 -56.97 -0.68 -8.18 16 24 C -0.15 -1.33 9.54 22.55 0.21 -1.11 16 25 C 0.14 1.33 11.17 84.75 0.95 2.28 16 26 N -0.48 -9.00 9.54 -185.12 -1.77 -10.76 16 27 C -0.13 -4.51 5.65 30.67 0.17 -4.34 16 28 C 0.15 6.08 6.52 86.36 0.56 6.65 16 29 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 30 H 0.03 1.36 7.08 -2.38 -0.02 1.34 16 31 H 0.06 2.77 4.50 -2.39 -0.01 2.76 16 32 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 35 H 0.42 9.94 7.93 -92.71 -0.74 9.20 16 36 H 0.13 4.00 7.38 -2.91 -0.02 3.98 16 37 H 0.22 -0.36 7.13 -2.91 -0.02 -0.38 16 38 H 0.19 0.28 8.06 -2.91 -0.02 0.25 16 39 H 0.22 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.20 -0.27 6.88 -2.91 -0.02 -0.29 16 41 H 0.22 0.14 8.06 -2.91 -0.02 0.12 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 Total: -1.00 -82.85 369.95 2.19 -80.66 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.20 Total: 13.40 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 7.42 Total: 17.78 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -7.05 Total: -138.64 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.06 Total: -21.68 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.67 Total: 48.48 kcal Total: -82.85 2.19 -80.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609858027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.435 kcal (2) G-P(sol) polarization free energy of solvation -82.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds