Wall clock time and date at job start Sat Apr 11 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47181 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99659 * 3 2 1 6 6 H 1.48496 * 109.47160 * 150.00013 * 3 2 1 7 7 C 1.38807 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00327 * 163.07599 * 7 2 1 9 9 N 1.36944 * 119.99530 * 343.06775 * 7 2 1 10 10 C 1.46917 * 120.63211 * 331.85361 * 9 7 2 11 11 C 1.53193 * 108.77319 * 233.58173 * 10 9 7 12 12 C 1.53043 * 109.31481 * 305.36482 * 11 10 9 13 13 N 1.46502 * 109.45796 * 181.38396 * 12 11 10 14 14 C 1.34780 * 119.99470 * 154.97688 * 13 12 11 15 15 O 1.21514 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.48156 * 119.99785 * 180.02562 * 14 13 12 17 17 C 1.39946 * 120.89158 * 359.97438 * 16 14 13 18 18 C 1.38059 * 119.13619 * 180.02562 * 17 16 14 19 19 N 1.31840 * 120.98329 * 359.73170 * 18 17 16 20 20 C 1.32242 * 121.96715 * 0.55730 * 19 18 17 21 21 N 1.39831 * 119.62016 * 179.70726 * 20 19 18 22 22 C 1.35842 * 126.10563 * 359.73669 * 21 20 19 23 23 C 1.35281 * 107.61569 * 179.97438 * 22 21 20 24 24 C 1.39954 * 107.96803 * 0.02562 * 23 22 21 25 25 N 1.30815 * 108.36766 * 0.26047 * 24 23 22 26 26 C 1.38909 * 120.75223 * 359.44163 * 20 19 18 27 27 C 1.53045 * 109.52372 * 61.37385 * 12 11 10 28 28 C 1.46928 * 120.62728 * 151.82815 * 9 7 2 29 29 H 0.97002 * 120.00270 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.58608 * 113.80147 * 10 9 7 31 31 H 1.08993 * 109.70592 * 353.44104 * 10 9 7 32 32 H 1.09004 * 109.49539 * 185.41600 * 11 10 9 33 33 H 1.08997 * 109.49584 * 65.32169 * 11 10 9 34 34 H 1.08994 * 109.46105 * 301.35735 * 12 11 10 35 35 H 0.96996 * 120.00460 * 334.97728 * 13 12 11 36 36 H 1.08001 * 120.43179 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.50689 * 179.97438 * 18 17 16 38 38 H 1.07998 * 126.19590 * 0.03081 * 22 21 20 39 39 H 1.07998 * 126.01609 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.81419 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.52763 * 180.25014 * 26 20 19 42 42 H 1.08999 * 109.49577 * 58.57855 * 27 12 11 43 43 H 1.08997 * 109.49641 * 178.67839 * 27 12 11 44 44 H 1.09003 * 109.58618 * 246.20816 * 28 9 7 45 45 H 1.09003 * 109.58536 * 6.48582 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2660 11 6 0.4975 -3.3208 2.4117 12 6 0.8121 -4.7021 1.8326 13 7 1.0397 -5.6496 2.9265 14 6 0.8359 -6.9674 2.7299 15 8 0.4629 -7.3694 1.6455 16 6 1.0655 -7.9256 3.8363 17 6 1.4945 -7.4830 5.0927 18 6 1.6977 -8.4076 6.0977 19 7 1.4886 -9.6926 5.8902 20 6 1.0884 -10.1565 4.7182 21 7 0.8875 -11.5301 4.5507 22 6 1.0695 -12.4871 5.4975 23 6 0.7685 -13.6807 4.9364 24 6 0.3916 -13.4506 3.6083 25 7 0.4681 -12.1658 3.3748 26 6 0.8602 -9.2943 3.6533 27 6 2.0677 -4.6177 0.9616 28 6 1.8140 -3.6527 -0.2007 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6770 -2.6411 0.7345 31 1 0.0967 -1.3359 1.6676 32 1 -0.3831 -3.3863 3.0507 33 1 1.3472 -2.9697 2.9972 34 1 -0.0279 -5.0418 1.2268 35 1 1.3371 -5.3287 3.7922 36 1 1.6645 -6.4320 5.2738 37 1 2.0292 -8.0727 7.0694 38 1 1.3948 -12.3245 6.5144 39 1 0.8121 -14.6419 5.4267 40 1 0.0927 -14.2057 2.8964 41 1 0.5296 -9.6767 2.6989 42 1 2.9024 -4.2542 1.5610 43 1 2.3048 -5.6062 0.5684 44 1 1.0404 -4.0598 -0.8518 45 1 2.7334 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610044607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:56 Heat of formation + Delta-G solvation = 115.320688 kcal Electronic energy + Delta-G solvation = -28302.130536 eV Core-core repulsion = 24322.511623 eV Total energy + Delta-G solvation = -3979.618913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93772 -40.71632 -39.39834 -37.39783 -34.69316 -34.07651 -33.07637 -32.09644 -30.77786 -30.19850 -29.78941 -29.38806 -25.81395 -24.69763 -24.24643 -22.57345 -22.24773 -21.66014 -21.13801 -20.35207 -19.57787 -18.67758 -17.54281 -16.93668 -16.56469 -15.96465 -15.92576 -15.69667 -15.22857 -15.01144 -14.77687 -14.52622 -14.09999 -13.94183 -13.85402 -13.70933 -13.58355 -13.15610 -13.02984 -12.71461 -12.55210 -12.37162 -11.52966 -11.21462 -11.18176 -10.97033 -10.88298 -10.74513 -10.58802 -10.48220 -10.35513 -10.29735 -10.10454 -9.99967 -9.79803 -9.58536 -9.58063 -8.87185 -8.70775 -8.50349 -6.72673 -5.83499 -3.25768 0.10531 0.43143 1.61119 1.70484 2.39549 2.74114 2.97680 3.34706 3.41902 3.43820 3.46604 3.84224 4.07108 4.24412 4.46086 4.46156 4.50213 4.62539 4.69217 5.04500 5.19912 5.25165 5.27982 5.33008 5.40437 5.43888 5.50900 5.53580 5.60557 5.78257 5.90127 6.00297 6.13303 6.15231 6.23882 6.44900 6.48349 6.50448 6.64942 6.73387 6.79061 6.93859 6.94818 7.25569 7.42409 7.45026 7.58795 7.76032 8.11589 8.40547 9.16707 9.79762 10.36614 11.25532 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.001932 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.182804 B =14489.452773 C =14950.910643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.711 5.711 14 C 0.552 3.448 15 O -0.523 6.523 16 C -0.057 4.057 17 C -0.157 4.157 18 C 0.133 3.867 19 N -0.496 5.496 20 C 0.366 3.634 21 N -0.327 5.327 22 C 0.078 3.922 23 C -0.265 4.265 24 C 0.064 3.936 25 N -0.280 5.280 26 C -0.109 4.109 27 C -0.140 4.140 28 C 0.147 3.853 29 H 0.254 0.746 30 H 0.022 0.978 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.149 0.851 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.157 0.843 40 H 0.195 0.805 41 H 0.162 0.838 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -22.293 15.597 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.362 5.362 14 C 0.337 3.663 15 O -0.399 6.399 16 C -0.069 4.069 17 C -0.178 4.178 18 C -0.025 4.025 19 N -0.210 5.210 20 C 0.139 3.861 21 N -0.105 5.105 22 C -0.063 4.063 23 C -0.294 4.294 24 C -0.125 4.125 25 N -0.098 5.098 26 C -0.132 4.132 27 C -0.180 4.180 28 C 0.020 3.980 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.231 0.769 36 H 0.166 0.834 37 H 0.192 0.808 38 H 0.200 0.800 39 H 0.175 0.825 40 H 0.211 0.789 41 H 0.179 0.821 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.903 -21.977 14.605 26.455 hybrid contribution 0.556 0.839 0.510 1.129 sum 2.459 -21.137 15.114 26.101 Atomic orbital electron populations 1.70021 1.05258 1.25585 1.53870 1.25060 0.95297 0.98460 1.00837 0.86303 0.79122 0.83601 0.77775 1.21359 1.21555 1.20505 1.19171 0.92585 0.84701 1.41780 0.91645 1.44092 1.35804 1.01675 1.49939 1.20743 0.88963 0.97895 0.87644 1.22557 1.00633 0.94503 1.00980 1.21163 0.98850 0.88098 0.87172 1.46275 1.67709 1.05984 1.16197 1.18032 0.78514 0.82609 0.87143 1.90816 1.45499 1.78220 1.25335 1.20427 0.98067 0.93756 0.94605 1.22400 1.00286 1.02175 0.92926 1.22489 0.94742 0.85708 0.99541 1.66718 1.14406 1.18333 1.21521 1.17526 0.96711 0.81448 0.90389 1.45790 1.51828 1.03390 1.09515 1.22929 0.99285 0.87760 0.96321 1.21689 1.13217 0.98750 0.95709 1.24221 0.97844 0.93445 0.96956 1.77585 1.21037 1.07930 1.03258 1.21718 0.99383 0.91618 1.00453 1.22390 0.96966 0.99710 0.98926 1.20875 0.98034 0.86511 0.92557 0.93564 0.96028 0.88918 0.92608 0.92039 0.89674 0.76892 0.83354 0.80793 0.79986 0.82528 0.78876 0.82073 0.92180 0.92648 0.96098 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.25 -6.78 9.58 -15.06 -0.14 -6.93 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.47 2.99 -172.32 -0.52 -14.98 16 10 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 11 C -0.15 -2.54 5.55 -26.61 -0.15 -2.69 16 12 C 0.15 2.49 2.42 -67.88 -0.16 2.33 16 13 N -0.71 -9.36 5.04 -54.61 -0.27 -9.63 16 14 C 0.55 7.97 7.76 -12.19 -0.09 7.87 16 15 O -0.52 -9.62 16.10 5.35 0.09 -9.53 16 16 C -0.06 -0.66 5.91 -104.68 -0.62 -1.28 16 17 C -0.16 -1.27 9.61 -39.01 -0.37 -1.64 16 18 C 0.13 0.99 11.17 -17.61 -0.20 0.80 16 19 N -0.50 -4.98 9.83 -12.34 -0.12 -5.10 16 20 C 0.37 4.33 7.55 -154.42 -1.17 3.16 16 21 N -0.33 -3.79 3.81 -12.12 -0.05 -3.84 16 22 C 0.08 0.69 11.10 -16.83 -0.19 0.51 16 23 C -0.27 -1.96 10.80 -39.99 -0.43 -2.39 16 24 C 0.06 0.54 12.02 -17.34 -0.21 0.33 16 25 N -0.28 -3.34 11.83 30.64 0.36 -2.98 16 26 C -0.11 -1.38 9.27 -38.82 -0.36 -1.74 16 27 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 28 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.61 7.58 -51.93 -0.39 1.21 16 35 H 0.40 3.92 6.74 -40.82 -0.28 3.64 16 36 H 0.15 0.77 6.53 -52.49 -0.34 0.43 16 37 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.18 1.20 8.05 -52.49 -0.42 0.77 16 39 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.16 2.28 7.37 -52.48 -0.39 1.89 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -33.81 376.30 -9.52 -43.33 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.90 Total: 3.21 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -4.37 Total: 2.71 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.03 Total: -61.58 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.81 -9.52 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610044607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.648 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds