Wall clock time and date at job start Sat Apr 11 2020 06:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47181 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99659 * 3 2 1 6 6 H 1.48496 * 109.47160 * 150.00013 * 3 2 1 7 7 C 1.38807 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00327 * 163.07599 * 7 2 1 9 9 N 1.36944 * 119.99530 * 343.06775 * 7 2 1 10 10 C 1.46917 * 120.63211 * 331.85361 * 9 7 2 11 11 C 1.53193 * 108.77319 * 233.58173 * 10 9 7 12 12 C 1.53043 * 109.31481 * 305.36482 * 11 10 9 13 13 N 1.46502 * 109.45796 * 181.38396 * 12 11 10 14 14 C 1.34780 * 119.99470 * 154.97688 * 13 12 11 15 15 O 1.21514 * 120.00312 * 359.97438 * 14 13 12 16 16 C 1.48156 * 119.99785 * 180.02562 * 14 13 12 17 17 C 1.39946 * 120.89158 * 359.97438 * 16 14 13 18 18 C 1.38059 * 119.13619 * 180.02562 * 17 16 14 19 19 N 1.31840 * 120.98329 * 359.73170 * 18 17 16 20 20 C 1.32242 * 121.96715 * 0.55730 * 19 18 17 21 21 N 1.39831 * 119.62016 * 179.70726 * 20 19 18 22 22 C 1.35842 * 126.10563 * 359.73669 * 21 20 19 23 23 C 1.35281 * 107.61569 * 179.97438 * 22 21 20 24 24 C 1.39954 * 107.96803 * 0.02562 * 23 22 21 25 25 N 1.30815 * 108.36766 * 0.26047 * 24 23 22 26 26 C 1.38909 * 120.75223 * 359.44163 * 20 19 18 27 27 C 1.53045 * 109.52372 * 61.37385 * 12 11 10 28 28 C 1.46928 * 120.62728 * 151.82815 * 9 7 2 29 29 H 0.97002 * 120.00270 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.58608 * 113.80147 * 10 9 7 31 31 H 1.08993 * 109.70592 * 353.44104 * 10 9 7 32 32 H 1.09004 * 109.49539 * 185.41600 * 11 10 9 33 33 H 1.08997 * 109.49584 * 65.32169 * 11 10 9 34 34 H 1.08994 * 109.46105 * 301.35735 * 12 11 10 35 35 H 0.96996 * 120.00460 * 334.97728 * 13 12 11 36 36 H 1.08001 * 120.43179 * 0.02562 * 17 16 14 37 37 H 1.07998 * 119.50689 * 179.97438 * 18 17 16 38 38 H 1.07998 * 126.19590 * 0.03081 * 22 21 20 39 39 H 1.07998 * 126.01609 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.81419 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.52763 * 180.25014 * 26 20 19 42 42 H 1.08999 * 109.49577 * 58.57855 * 27 12 11 43 43 H 1.08997 * 109.49641 * 178.67839 * 27 12 11 44 44 H 1.09003 * 109.58618 * 246.20816 * 28 9 7 45 45 H 1.09003 * 109.58536 * 6.48582 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3625 0.3444 10 6 0.2262 -2.3408 1.2660 11 6 0.4975 -3.3208 2.4117 12 6 0.8121 -4.7021 1.8326 13 7 1.0397 -5.6496 2.9265 14 6 0.8359 -6.9674 2.7299 15 8 0.4629 -7.3694 1.6455 16 6 1.0655 -7.9256 3.8363 17 6 1.4945 -7.4830 5.0927 18 6 1.6977 -8.4076 6.0977 19 7 1.4886 -9.6926 5.8902 20 6 1.0884 -10.1565 4.7182 21 7 0.8875 -11.5301 4.5507 22 6 1.0695 -12.4871 5.4975 23 6 0.7685 -13.6807 4.9364 24 6 0.3916 -13.4506 3.6083 25 7 0.4681 -12.1658 3.3748 26 6 0.8602 -9.2943 3.6533 27 6 2.0677 -4.6177 0.9616 28 6 1.8140 -3.6527 -0.2007 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6770 -2.6411 0.7345 31 1 0.0967 -1.3359 1.6676 32 1 -0.3831 -3.3863 3.0507 33 1 1.3472 -2.9697 2.9972 34 1 -0.0279 -5.0418 1.2268 35 1 1.3371 -5.3287 3.7922 36 1 1.6645 -6.4320 5.2738 37 1 2.0292 -8.0727 7.0694 38 1 1.3948 -12.3245 6.5144 39 1 0.8121 -14.6419 5.4267 40 1 0.0927 -14.2057 2.8964 41 1 0.5296 -9.6767 2.6989 42 1 2.9024 -4.2542 1.5610 43 1 2.3048 -5.6062 0.5684 44 1 1.0404 -4.0598 -0.8518 45 1 2.7334 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610044607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:55 Heat of formation + Delta-G solvation = 93.688817 kcal Electronic energy + Delta-G solvation = -28303.068564 eV Core-core repulsion = 24322.511623 eV Total energy + Delta-G solvation = -3980.556941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63679 -41.62613 -40.46215 -38.95495 -36.16760 -34.96513 -34.06496 -33.62421 -31.86521 -31.49250 -31.08240 -30.41910 -27.30502 -25.90431 -25.10082 -24.00858 -23.67510 -22.77965 -21.81775 -21.44574 -20.99204 -19.72243 -18.76500 -18.28870 -17.62586 -16.90798 -16.80080 -16.73859 -16.61995 -16.12637 -15.99263 -15.57628 -15.36971 -15.20678 -15.04518 -14.78883 -14.66327 -14.44781 -14.27565 -14.13062 -13.71566 -13.23735 -13.22315 -13.02471 -12.63223 -12.53803 -12.27419 -12.04025 -11.89584 -11.87223 -11.64721 -11.60405 -11.50595 -11.31817 -11.16894 -10.85753 -10.56507 -10.27195 -10.14623 -9.38568 -8.71454 -7.88317 -5.33993 -0.66256 -0.35820 0.94396 1.03634 1.48609 1.49974 1.59858 1.72500 1.81225 1.86362 2.51961 2.65067 3.15759 3.27622 3.32312 3.41561 3.65041 3.73908 3.79928 3.87342 3.99146 4.04028 4.07374 4.28790 4.40280 4.44089 4.55220 4.62186 4.63613 4.71320 4.76380 4.83093 4.85460 4.98713 5.01825 5.02571 5.12992 5.24332 5.27198 5.41437 5.46100 5.56051 5.64463 5.71074 5.98399 6.28828 6.37821 6.40877 6.73040 7.03613 7.14182 7.83295 8.36142 9.18853 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.001932 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.182804 B =14489.452773 C =14950.910643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.177 3.823 11 C -0.128 4.128 12 C 0.161 3.839 13 N -0.693 5.693 14 C 0.554 3.446 15 O -0.572 6.572 16 C -0.069 4.069 17 C -0.138 4.138 18 C 0.145 3.855 19 N -0.498 5.498 20 C 0.354 3.646 21 N -0.345 5.345 22 C 0.065 3.935 23 C -0.257 4.257 24 C 0.065 3.935 25 N -0.333 5.333 26 C -0.133 4.133 27 C -0.125 4.125 28 C 0.144 3.856 29 H 0.251 0.749 30 H -0.007 1.007 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.417 0.583 36 H 0.186 0.814 37 H 0.223 0.777 38 H 0.203 0.797 39 H 0.190 0.810 40 H 0.224 0.776 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.005 0.995 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -22.961 19.090 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.167 4.167 12 C 0.057 3.943 13 N -0.345 5.345 14 C 0.341 3.659 15 O -0.451 6.451 16 C -0.080 4.080 17 C -0.159 4.159 18 C -0.013 4.013 19 N -0.212 5.212 20 C 0.128 3.872 21 N -0.123 5.123 22 C -0.075 4.075 23 C -0.285 4.285 24 C -0.123 4.123 25 N -0.151 5.151 26 C -0.156 4.156 27 C -0.165 4.165 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.011 0.989 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.256 0.744 36 H 0.203 0.797 37 H 0.240 0.760 38 H 0.220 0.780 39 H 0.207 0.793 40 H 0.241 0.759 41 H 0.149 0.851 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.023 0.977 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.652 -22.684 18.139 29.273 hybrid contribution 0.010 0.951 -0.580 1.114 sum 3.662 -21.733 17.559 28.179 Atomic orbital electron populations 1.70182 1.06692 1.25974 1.55299 1.25821 0.96039 1.01547 1.01107 0.85264 0.78177 0.79448 0.77443 1.21547 1.21756 1.19248 1.19502 0.92874 0.85759 1.41170 0.91467 1.44350 1.35951 1.02121 1.50749 1.20583 0.87642 0.97905 0.88802 1.22270 1.02409 0.93063 0.98983 1.20754 0.97400 0.88401 0.87778 1.45882 1.67332 1.05077 1.16205 1.18435 0.77256 0.83004 0.87215 1.90797 1.47665 1.79024 1.27618 1.20169 1.00092 0.92517 0.95213 1.22785 0.97975 1.04187 0.90972 1.23367 0.92404 0.84551 1.01012 1.66875 1.14274 1.19691 1.20356 1.17623 0.97182 0.81783 0.90643 1.45935 1.52751 1.03687 1.09976 1.23455 0.99319 0.87780 0.96899 1.22122 1.11666 0.99644 0.95085 1.24883 0.96290 0.92957 0.98200 1.77558 1.23210 1.09675 1.04699 1.21522 1.01480 0.92634 0.99985 1.22182 0.97818 0.98627 0.97860 1.20959 0.97385 0.86047 0.93846 0.94007 0.98908 0.91613 0.90120 0.90418 0.92321 0.74387 0.79676 0.76046 0.78035 0.79304 0.75945 0.85062 0.90889 0.92437 0.97694 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.49 11.19 21.65 0.24 -54.25 16 2 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 3 Si 0.97 43.82 29.59 68.60 2.03 45.85 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.26 -14.20 9.58 84.03 0.81 -13.39 16 8 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 9 N -0.61 -30.12 2.99 -699.11 -2.09 -32.21 16 10 C 0.18 8.21 5.30 86.36 0.46 8.67 16 11 C -0.13 -4.24 5.55 30.67 0.17 -4.07 16 12 C 0.16 5.22 2.42 45.02 0.11 5.33 16 13 N -0.69 -16.82 5.04 -444.97 -2.24 -19.06 16 14 C 0.55 15.78 7.76 86.88 0.67 16.45 16 15 O -0.57 -21.96 16.10 -3.76 -0.06 -22.02 16 16 C -0.07 -1.53 5.91 -19.90 -0.12 -1.65 16 17 C -0.14 -1.72 9.61 22.64 0.22 -1.50 16 18 C 0.14 1.56 11.17 84.65 0.95 2.51 16 19 N -0.50 -8.84 9.83 -192.95 -1.90 -10.73 16 20 C 0.35 8.30 7.55 132.77 1.00 9.30 16 21 N -0.34 -8.05 3.81 -192.27 -0.73 -8.78 16 22 C 0.07 1.08 11.10 83.39 0.93 2.01 16 23 C -0.26 -3.35 10.80 22.00 0.24 -3.11 16 24 C 0.06 1.06 12.02 85.26 1.02 2.08 16 25 N -0.33 -8.26 11.83 -56.98 -0.67 -8.93 16 26 C -0.13 -3.49 9.27 22.76 0.21 -3.28 16 27 C -0.12 -4.33 5.65 30.67 0.17 -4.16 16 28 C 0.14 6.16 6.52 86.36 0.56 6.73 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.07 3.41 6.06 -2.39 -0.01 3.39 16 32 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 34 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 35 H 0.42 6.56 6.74 -92.71 -0.62 5.94 16 36 H 0.19 0.85 6.53 -2.91 -0.02 0.83 16 37 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 38 H 0.20 2.25 8.05 -2.91 -0.02 2.23 16 39 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 40 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.13 4.17 7.37 -2.91 -0.02 4.15 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 Total: -1.00 -78.95 376.30 2.79 -76.16 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.40 Total: 14.38 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 7.82 Total: 19.61 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -7.39 Total: -133.97 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -78.95 2.79 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610044607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.847 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds