Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48501 * 109.47454 * 240.00244 * 3 2 1 5 5 H 1.48504 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47307 * 119.99872 * 3 2 1 7 7 C 1.38817 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99942 * 163.07713 * 7 2 1 9 9 N 1.36936 * 119.99825 * 343.07966 * 7 2 1 10 10 C 1.46927 * 120.63301 * 331.84475 * 9 7 2 11 11 C 1.53189 * 108.77648 * 233.58726 * 10 9 7 12 12 C 1.53045 * 109.31167 * 305.36314 * 11 10 9 13 13 N 1.46497 * 109.46174 * 181.38474 * 12 11 10 14 14 C 1.34777 * 120.00415 * 154.96835 * 13 12 11 15 15 O 1.21577 * 119.99271 * 0.02562 * 14 13 12 16 16 C 1.47662 * 120.00068 * 180.02562 * 14 13 12 17 17 C 1.40235 * 120.49180 * 180.02562 * 16 14 13 18 18 C 1.38032 * 118.35104 * 179.97438 * 17 16 14 19 19 C 1.39158 * 119.25865 * 0.02562 * 18 17 16 20 20 N 1.39490 * 119.53069 * 180.02562 * 19 18 17 21 21 C 1.35912 * 126.10544 * 179.97438 * 20 19 18 22 22 C 1.35245 * 107.60396 * 179.70230 * 21 20 19 23 23 C 1.40008 * 107.97067 * 0.42914 * 22 21 20 24 24 N 1.30796 * 108.37573 * 359.56231 * 23 22 21 25 25 N 1.32443 * 120.94034 * 0.27149 * 19 18 17 26 26 C 1.31636 * 121.79944 * 359.43542 * 25 19 18 27 27 C 1.53036 * 109.52564 * 61.36973 * 12 11 10 28 28 C 1.46928 * 120.63176 * 151.81780 * 9 7 2 29 29 H 0.97002 * 119.99447 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58583 * 113.79386 * 10 9 7 31 31 H 1.09001 * 109.69950 * 353.44300 * 10 9 7 32 32 H 1.09001 * 109.49659 * 185.41628 * 11 10 9 33 33 H 1.08998 * 109.52512 * 65.32734 * 11 10 9 34 34 H 1.09006 * 109.45986 * 301.35935 * 12 11 10 35 35 H 0.97009 * 120.00009 * 334.97624 * 13 12 11 36 36 H 1.07995 * 120.82237 * 359.95864 * 17 16 14 37 37 H 1.07995 * 120.36962 * 179.97438 * 18 17 16 38 38 H 1.08000 * 126.19662 * 0.02562 * 21 20 19 39 39 H 1.07996 * 126.01719 * 180.29088 * 22 21 20 40 40 H 1.08000 * 125.81090 * 179.82109 * 23 22 21 41 41 H 1.08002 * 119.68015 * 180.28976 * 26 25 19 42 42 H 1.09007 * 109.49893 * 58.58170 * 27 12 11 43 43 H 1.09004 * 109.49890 * 178.67257 * 27 12 11 44 44 H 1.08994 * 109.58977 * 246.20519 * 28 9 7 45 45 H 1.09008 * 109.58283 * 6.48685 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3441 10 6 0.2260 -2.3410 1.2657 11 6 0.4972 -3.3212 2.4114 12 6 0.8117 -4.7024 1.8320 13 7 1.0392 -5.6501 2.9257 14 6 0.8352 -6.9678 2.7291 15 8 0.4628 -7.3698 1.6438 16 6 1.0640 -7.9229 3.8317 17 6 0.8554 -9.2961 3.6383 18 6 1.0833 -10.1495 4.6991 19 6 1.5083 -9.6241 5.9155 20 7 1.7408 -10.4813 6.9911 21 6 2.1565 -10.1148 8.2321 22 6 2.2536 -11.2379 8.9793 23 6 1.8970 -12.3254 8.1728 24 7 1.5868 -11.8738 6.9851 25 7 1.6906 -8.3211 6.0680 26 6 1.4905 -7.4726 5.0818 27 6 2.0673 -4.6179 0.9611 28 6 1.8137 -3.6528 -0.2012 29 1 -0.4849 0.8401 0.0004 30 1 -0.6771 -2.6410 0.7342 31 1 0.0966 -1.3361 1.6675 32 1 -0.3835 -3.3866 3.0503 33 1 1.3467 -2.9704 2.9974 34 1 -0.0284 -5.0419 1.2261 35 1 1.3366 -5.3293 3.7916 36 1 0.5245 -9.6765 2.6833 37 1 0.9325 -11.2129 4.5864 38 1 2.3659 -9.1083 8.5632 39 1 2.5553 -11.2875 10.0150 40 1 1.8771 -13.3605 8.4803 41 1 1.6542 -6.4173 5.2428 42 1 2.9021 -4.2546 1.5605 43 1 2.3044 -5.6065 0.5678 44 1 1.0401 -4.0597 -0.8523 45 1 2.7332 -3.5124 -0.7696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730503745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = 113.712031 kcal Electronic energy + Delta-G solvation = -28155.535556 eV Core-core repulsion = 24175.846886 eV Total energy + Delta-G solvation = -3979.688670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02259 -40.74423 -39.32742 -37.36407 -34.62288 -34.10937 -33.02567 -32.24772 -30.89930 -30.42417 -29.94446 -29.11486 -25.60717 -24.64662 -24.29080 -22.49415 -22.18198 -21.58191 -21.25727 -20.45979 -19.50539 -18.91974 -17.86728 -17.08337 -16.67249 -16.03560 -15.74682 -15.53971 -15.01428 -14.99938 -14.76708 -14.48807 -13.98392 -13.87576 -13.71987 -13.58356 -13.55310 -13.22364 -13.19174 -12.98065 -12.66859 -12.40194 -11.51450 -11.36720 -11.16263 -10.94568 -10.86832 -10.73968 -10.57681 -10.45455 -10.42709 -10.31397 -10.08123 -9.95143 -9.76654 -9.65962 -9.56044 -8.90483 -8.70033 -8.48586 -6.71690 -5.82337 -3.24705 -0.07676 0.69466 1.46802 1.62964 2.29699 2.73641 3.10908 3.36737 3.42527 3.43451 3.48649 3.70119 3.97703 4.29977 4.39630 4.47189 4.49300 4.62074 4.71064 4.94715 5.14084 5.18402 5.27953 5.35223 5.43912 5.45737 5.48074 5.52949 5.64124 5.80385 5.86078 6.02338 6.04727 6.18060 6.26053 6.47244 6.50075 6.52852 6.56275 6.75130 6.81647 6.84879 6.95202 7.27261 7.34754 7.49035 7.60887 7.76847 8.17603 8.41744 9.17874 9.80906 10.37821 11.26598 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028087 B = 0.001874 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.653382 B =14936.060931 C =15499.859460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.151 3.849 13 N -0.716 5.716 14 C 0.561 3.439 15 O -0.533 6.533 16 C -0.194 4.194 17 C 0.007 3.993 18 C -0.171 4.171 19 C 0.387 3.613 20 N -0.329 5.329 21 C 0.081 3.919 22 C -0.264 4.264 23 C 0.067 3.933 24 N -0.284 5.284 25 N -0.509 5.509 26 C 0.170 3.830 27 C -0.139 4.139 28 C 0.147 3.853 29 H 0.255 0.745 30 H 0.021 0.979 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.394 0.606 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.185 0.815 39 H 0.158 0.842 40 H 0.195 0.805 41 H 0.172 0.828 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -21.332 17.570 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.366 5.366 14 C 0.346 3.654 15 O -0.410 6.410 16 C -0.201 4.201 17 C -0.020 4.020 18 C -0.193 4.193 19 C 0.160 3.840 20 N -0.107 5.107 21 C -0.060 4.060 22 C -0.293 4.293 23 C -0.122 4.122 24 N -0.102 5.102 25 N -0.222 5.222 26 C 0.011 3.989 27 C -0.180 4.180 28 C 0.020 3.980 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.229 0.771 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.202 0.798 39 H 0.176 0.824 40 H 0.212 0.788 41 H 0.189 0.811 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.468 -21.373 16.342 27.018 hybrid contribution 0.632 0.925 0.672 1.306 sum 3.100 -20.448 17.014 26.781 Atomic orbital electron populations 1.70014 1.05247 1.25683 1.53795 1.25058 0.95299 0.98446 1.00818 0.86361 0.78902 0.83300 0.78139 1.20867 1.21637 1.21049 1.19144 0.92570 0.84736 1.41859 0.91677 1.44080 1.35798 1.01669 1.49940 1.20742 0.88946 0.97903 0.87652 1.22557 1.00639 0.94586 1.00948 1.21129 0.98765 0.88105 0.87212 1.46297 1.68048 1.06196 1.16047 1.17855 0.78001 0.82414 0.87114 1.90804 1.46392 1.78298 1.25524 1.21143 1.07123 0.95562 0.96240 1.21683 0.90120 0.91087 0.99106 1.21594 1.03703 1.02673 0.91376 1.17858 0.94099 0.86818 0.85238 1.45777 1.51615 1.05096 1.08165 1.23006 0.97358 1.01384 0.84245 1.21724 1.13958 0.91234 1.02334 1.24230 0.96698 1.00849 0.90435 1.77487 1.24395 0.86132 1.22204 1.66851 1.19639 1.01164 1.34586 1.22735 0.90945 0.98820 0.86445 1.22388 0.97024 0.99656 0.98911 1.20874 0.97988 0.86523 0.92581 0.93522 0.96043 0.88963 0.92621 0.92058 0.89715 0.77095 0.82362 0.82753 0.79815 0.82437 0.78847 0.81137 0.92218 0.92657 0.96131 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.43 2.99 -172.32 -0.52 -14.94 16 10 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 11 C -0.15 -2.55 5.55 -26.61 -0.15 -2.70 16 12 C 0.15 2.48 2.42 -67.89 -0.16 2.31 16 13 N -0.72 -9.23 5.03 -54.77 -0.28 -9.51 16 14 C 0.56 7.68 7.74 -12.41 -0.10 7.59 16 15 O -0.53 -9.25 16.08 5.30 0.09 -9.16 16 16 C -0.19 -2.13 5.89 -104.81 -0.62 -2.74 16 17 C 0.01 0.07 9.70 -38.91 -0.38 -0.31 16 18 C -0.17 -1.69 9.68 -39.32 -0.38 -2.07 16 19 C 0.39 4.17 7.55 -154.50 -1.17 3.00 16 20 N -0.33 -3.39 3.80 -12.10 -0.05 -3.44 16 21 C 0.08 0.66 11.09 -16.81 -0.19 0.48 16 22 C -0.26 -1.72 10.80 -39.98 -0.43 -2.16 16 23 C 0.07 0.47 12.02 -17.33 -0.21 0.26 16 24 N -0.28 -2.82 11.81 30.65 0.36 -2.46 16 25 N -0.51 -5.28 9.83 -11.99 -0.12 -5.39 16 26 C 0.17 1.60 10.71 -17.15 -0.18 1.42 16 27 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 28 C 0.15 3.09 6.52 -3.71 -0.02 3.06 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 2.34 6.07 -51.93 -0.31 2.03 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 35 H 0.39 3.88 6.66 -40.82 -0.27 3.61 16 36 H 0.16 1.50 7.73 -52.49 -0.41 1.10 16 37 H 0.15 1.37 7.67 -52.49 -0.40 0.96 16 38 H 0.18 1.18 8.05 -52.49 -0.42 0.76 16 39 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.17 1.13 6.41 -52.49 -0.34 0.80 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -33.06 375.99 -9.52 -42.58 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.89 Total: 2.95 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -4.38 Total: 2.52 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.03 Total: -60.79 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.06 -9.52 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730503745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.296 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds