Wall clock time and date at job start Sat Apr 11 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48501 * 109.47454 * 240.00244 * 3 2 1 5 5 H 1.48504 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47307 * 119.99872 * 3 2 1 7 7 C 1.38817 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99942 * 163.07713 * 7 2 1 9 9 N 1.36936 * 119.99825 * 343.07966 * 7 2 1 10 10 C 1.46927 * 120.63301 * 331.84475 * 9 7 2 11 11 C 1.53189 * 108.77648 * 233.58726 * 10 9 7 12 12 C 1.53045 * 109.31167 * 305.36314 * 11 10 9 13 13 N 1.46497 * 109.46174 * 181.38474 * 12 11 10 14 14 C 1.34777 * 120.00415 * 154.96835 * 13 12 11 15 15 O 1.21577 * 119.99271 * 0.02562 * 14 13 12 16 16 C 1.47662 * 120.00068 * 180.02562 * 14 13 12 17 17 C 1.40235 * 120.49180 * 180.02562 * 16 14 13 18 18 C 1.38032 * 118.35104 * 179.97438 * 17 16 14 19 19 C 1.39158 * 119.25865 * 0.02562 * 18 17 16 20 20 N 1.39490 * 119.53069 * 180.02562 * 19 18 17 21 21 C 1.35912 * 126.10544 * 179.97438 * 20 19 18 22 22 C 1.35245 * 107.60396 * 179.70230 * 21 20 19 23 23 C 1.40008 * 107.97067 * 0.42914 * 22 21 20 24 24 N 1.30796 * 108.37573 * 359.56231 * 23 22 21 25 25 N 1.32443 * 120.94034 * 0.27149 * 19 18 17 26 26 C 1.31636 * 121.79944 * 359.43542 * 25 19 18 27 27 C 1.53036 * 109.52564 * 61.36973 * 12 11 10 28 28 C 1.46928 * 120.63176 * 151.81780 * 9 7 2 29 29 H 0.97002 * 119.99447 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58583 * 113.79386 * 10 9 7 31 31 H 1.09001 * 109.69950 * 353.44300 * 10 9 7 32 32 H 1.09001 * 109.49659 * 185.41628 * 11 10 9 33 33 H 1.08998 * 109.52512 * 65.32734 * 11 10 9 34 34 H 1.09006 * 109.45986 * 301.35935 * 12 11 10 35 35 H 0.97009 * 120.00009 * 334.97624 * 13 12 11 36 36 H 1.07995 * 120.82237 * 359.95864 * 17 16 14 37 37 H 1.07995 * 120.36962 * 179.97438 * 18 17 16 38 38 H 1.08000 * 126.19662 * 0.02562 * 21 20 19 39 39 H 1.07996 * 126.01719 * 180.29088 * 22 21 20 40 40 H 1.08000 * 125.81090 * 179.82109 * 23 22 21 41 41 H 1.08002 * 119.68015 * 180.28976 * 26 25 19 42 42 H 1.09007 * 109.49893 * 58.58170 * 27 12 11 43 43 H 1.09004 * 109.49890 * 178.67257 * 27 12 11 44 44 H 1.08994 * 109.58977 * 246.20519 * 28 9 7 45 45 H 1.09008 * 109.58283 * 6.48685 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3441 10 6 0.2260 -2.3410 1.2657 11 6 0.4972 -3.3212 2.4114 12 6 0.8117 -4.7024 1.8320 13 7 1.0392 -5.6501 2.9257 14 6 0.8352 -6.9678 2.7291 15 8 0.4628 -7.3698 1.6438 16 6 1.0640 -7.9229 3.8317 17 6 0.8554 -9.2961 3.6383 18 6 1.0833 -10.1495 4.6991 19 6 1.5083 -9.6241 5.9155 20 7 1.7408 -10.4813 6.9911 21 6 2.1565 -10.1148 8.2321 22 6 2.2536 -11.2379 8.9793 23 6 1.8970 -12.3254 8.1728 24 7 1.5868 -11.8738 6.9851 25 7 1.6906 -8.3211 6.0680 26 6 1.4905 -7.4726 5.0818 27 6 2.0673 -4.6179 0.9611 28 6 1.8137 -3.6528 -0.2012 29 1 -0.4849 0.8401 0.0004 30 1 -0.6771 -2.6410 0.7342 31 1 0.0966 -1.3361 1.6675 32 1 -0.3835 -3.3866 3.0503 33 1 1.3467 -2.9704 2.9974 34 1 -0.0284 -5.0419 1.2261 35 1 1.3366 -5.3293 3.7916 36 1 0.5245 -9.6765 2.6833 37 1 0.9325 -11.2129 4.5864 38 1 2.3659 -9.1083 8.5632 39 1 2.5553 -11.2875 10.0150 40 1 1.8771 -13.3605 8.4803 41 1 1.6542 -6.4173 5.2428 42 1 2.9021 -4.2546 1.5605 43 1 2.3044 -5.6065 0.5678 44 1 1.0401 -4.0597 -0.8523 45 1 2.7332 -3.5124 -0.7696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730503745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:02 Heat of formation + Delta-G solvation = 93.523612 kcal Electronic energy + Delta-G solvation = -28156.410991 eV Core-core repulsion = 24175.846886 eV Total energy + Delta-G solvation = -3980.564105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.65785 -41.61221 -40.39163 -38.88788 -36.09757 -34.90697 -33.98915 -33.70911 -32.00525 -31.54777 -31.22885 -30.31696 -27.09644 -25.78904 -25.06708 -23.99451 -23.66742 -22.50289 -21.87193 -21.48417 -21.04289 -19.63337 -19.11686 -18.38740 -17.92171 -16.94175 -16.74621 -16.60226 -16.31549 -16.05619 -15.90487 -15.50713 -15.33646 -15.16077 -14.80950 -14.69838 -14.52147 -14.32184 -14.22797 -14.14503 -13.85918 -13.70206 -13.20582 -12.99278 -12.58029 -12.54186 -12.24994 -12.03520 -11.95032 -11.86652 -11.61276 -11.56907 -11.45190 -11.24029 -11.19121 -10.81020 -10.54120 -10.30272 -10.08315 -9.41509 -8.69577 -7.86933 -5.32423 -0.85065 -0.04396 0.80367 0.99908 1.49863 1.51210 1.58408 1.77003 1.81923 2.01147 2.52921 2.64356 3.02849 3.28823 3.32490 3.48225 3.64241 3.68531 3.77927 3.91024 4.01514 4.04514 4.07108 4.33388 4.34902 4.47092 4.49804 4.64422 4.66121 4.75929 4.80927 4.84951 4.88315 5.01844 5.03716 5.06622 5.14617 5.16479 5.31160 5.47537 5.49074 5.55583 5.65763 5.73148 5.93151 6.20702 6.39761 6.48383 6.67851 7.12985 7.15709 7.85346 8.37890 9.19875 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028087 B = 0.001874 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.653382 B =14936.060931 C =15499.859460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.177 3.823 11 C -0.130 4.130 12 C 0.163 3.837 13 N -0.702 5.702 14 C 0.566 3.434 15 O -0.574 6.574 16 C -0.207 4.207 17 C 0.009 3.991 18 C -0.175 4.175 19 C 0.382 3.618 20 N -0.347 5.347 21 C 0.061 3.939 22 C -0.255 4.255 23 C 0.072 3.928 24 N -0.320 5.320 25 N -0.517 5.517 26 C 0.183 3.817 27 C -0.125 4.125 28 C 0.144 3.856 29 H 0.251 0.749 30 H -0.006 1.006 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.413 0.587 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.197 0.803 39 H 0.188 0.812 40 H 0.229 0.771 41 H 0.200 0.800 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.007 0.993 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 -22.403 20.329 30.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.169 4.169 12 C 0.058 3.942 13 N -0.353 5.353 14 C 0.353 3.647 15 O -0.454 6.454 16 C -0.213 4.213 17 C -0.018 4.018 18 C -0.198 4.198 19 C 0.155 3.845 20 N -0.125 5.125 21 C -0.078 4.078 22 C -0.282 4.282 23 C -0.117 4.117 24 N -0.138 5.138 25 N -0.230 5.230 26 C 0.023 3.977 27 C -0.165 4.165 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.013 0.987 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.251 0.749 36 H 0.178 0.822 37 H 0.178 0.822 38 H 0.214 0.786 39 H 0.205 0.795 40 H 0.245 0.755 41 H 0.217 0.783 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.025 0.975 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.954 -22.476 19.159 29.797 hybrid contribution 0.186 1.112 -0.124 1.134 sum 4.140 -21.364 19.035 28.912 Atomic orbital electron populations 1.70176 1.06648 1.25988 1.55268 1.25806 0.96033 1.01492 1.01138 0.85336 0.77531 0.79159 0.78354 1.20419 1.22153 1.20096 1.19475 0.92857 0.85842 1.41196 0.91524 1.44337 1.35937 1.02163 1.50753 1.20575 0.87706 0.97821 0.88802 1.22274 1.02236 0.93436 0.98958 1.20710 0.97412 0.88256 0.87797 1.45943 1.67894 1.05534 1.15967 1.18149 0.76801 0.82585 0.87123 1.90790 1.48294 1.78937 1.27399 1.20875 1.09355 0.95067 0.96026 1.21744 0.89629 0.91073 0.99307 1.21614 1.04074 1.02897 0.91184 1.18135 0.93399 0.87213 0.85748 1.45927 1.52650 1.05286 1.08610 1.23450 0.97749 1.02688 0.83928 1.22149 1.12328 0.90350 1.03392 1.24943 0.94650 1.02569 0.89517 1.77473 1.26094 0.86268 1.24012 1.66963 1.20250 1.01105 1.34663 1.23133 0.89204 0.99953 0.85420 1.22184 0.97783 0.98738 0.97783 1.20969 0.97379 0.85982 0.93904 0.94039 0.98744 0.91826 0.90240 0.90787 0.92008 0.74872 0.82227 0.82229 0.78642 0.79517 0.75458 0.78313 0.91239 0.92068 0.97477 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 11.19 21.65 0.24 -54.23 16 2 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 3 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.26 -14.24 9.58 84.03 0.81 -13.44 16 8 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -30.03 2.99 -699.09 -2.09 -32.12 16 10 C 0.18 8.22 5.30 86.36 0.46 8.67 16 11 C -0.13 -4.32 5.55 30.67 0.17 -4.15 16 12 C 0.16 5.17 2.42 45.02 0.11 5.28 16 13 N -0.70 -16.66 5.03 -445.45 -2.24 -18.90 16 14 C 0.57 14.84 7.74 86.73 0.67 15.51 16 15 O -0.57 -19.86 16.08 -3.96 -0.06 -19.92 16 16 C -0.21 -4.24 5.89 -19.99 -0.12 -4.36 16 17 C 0.01 0.18 9.70 22.71 0.22 0.40 16 18 C -0.18 -3.36 9.68 22.44 0.22 -3.14 16 19 C 0.38 7.80 7.55 132.89 1.00 8.81 16 20 N -0.35 -6.71 3.80 -192.19 -0.73 -7.44 16 21 C 0.06 0.89 11.09 83.37 0.92 1.81 16 22 C -0.25 -2.60 10.80 22.01 0.24 -2.37 16 23 C 0.07 0.83 12.02 85.28 1.02 1.85 16 24 N -0.32 -5.94 11.81 -56.95 -0.67 -6.61 16 25 N -0.52 -9.76 9.83 -191.84 -1.88 -11.64 16 26 C 0.18 3.02 10.71 85.04 0.91 3.93 16 27 C -0.12 -4.24 5.65 30.67 0.17 -4.07 16 28 C 0.14 6.08 6.52 86.36 0.56 6.64 16 29 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 30 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.30 7.58 -2.38 -0.02 2.28 16 35 H 0.41 6.76 6.66 -92.70 -0.62 6.15 16 36 H 0.16 3.04 7.73 -2.91 -0.02 3.02 16 37 H 0.16 2.80 7.67 -2.91 -0.02 2.77 16 38 H 0.20 2.14 8.05 -2.91 -0.02 2.11 16 39 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 40 H 0.23 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.20 1.94 6.41 -2.91 -0.02 1.92 16 42 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.06 2.37 7.93 -2.38 -0.02 2.35 16 Total: -1.00 -73.37 375.99 2.78 -70.59 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.41 Total: 15.18 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 7.79 Total: 19.09 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -7.38 Total: -130.95 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.92 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.37 2.78 -70.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730503745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.113 kcal (2) G-P(sol) polarization free energy of solvation -73.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds