Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99760 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99449 * 3 2 1 5 5 H 1.48497 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46844 * 119.99867 * 3 2 1 7 7 C 1.37877 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99849 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46731 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99550 * 169.99892 * 10 9 7 12 12 C 1.53235 * 109.33718 * 187.25391 * 11 10 9 13 13 N 1.47081 * 108.52223 * 306.17155 * 12 11 10 14 14 C 1.34778 * 120.87845 * 231.18698 * 13 12 11 15 15 O 1.21574 * 120.00571 * 5.80398 * 14 13 12 16 16 C 1.47671 * 119.99743 * 185.80424 * 14 13 12 17 17 C 1.40228 * 120.49737 * 38.85893 * 16 14 13 18 18 C 1.38032 * 118.35743 * 179.97438 * 17 16 14 19 19 C 1.39159 * 119.25391 * 359.97438 * 18 17 16 20 20 N 1.39494 * 119.52709 * 179.97438 * 19 18 17 21 21 C 1.35920 * 126.10231 * 180.02562 * 20 19 18 22 22 C 1.35242 * 107.60338 * 179.70924 * 21 20 19 23 23 C 1.40008 * 107.96705 * 0.43192 * 22 21 20 24 24 N 1.30792 * 108.38116 * 359.56062 * 23 22 21 25 25 N 1.32442 * 120.94189 * 0.28415 * 19 18 17 26 26 C 1.31634 * 121.80049 * 359.42746 * 25 19 18 27 27 C 1.47074 * 118.23956 * 51.45731 * 13 12 11 28 28 C 1.46895 * 111.00273 * 294.30083 * 10 9 7 29 29 H 0.96999 * 120.00150 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47028 * 60.00058 * 9 7 2 31 31 H 1.08999 * 109.46612 * 299.99679 * 9 7 2 32 32 H 1.08993 * 109.49145 * 67.29677 * 11 10 9 33 33 H 1.08997 * 109.49281 * 307.21222 * 11 10 9 34 34 H 1.09000 * 109.63016 * 186.46263 * 12 11 10 35 35 H 1.09004 * 109.63318 * 65.87654 * 12 11 10 36 36 H 1.08003 * 120.82271 * 359.97438 * 17 16 14 37 37 H 1.08001 * 120.37237 * 179.97438 * 18 17 16 38 38 H 1.07999 * 126.19624 * 0.02562 * 21 20 19 39 39 H 1.07994 * 126.01884 * 180.29012 * 22 21 20 40 40 H 1.08008 * 125.80816 * 179.82693 * 23 22 21 41 41 H 1.07996 * 119.67936 * 180.29352 * 26 25 19 42 42 H 1.09005 * 109.63075 * 68.25492 * 27 13 12 43 43 H 1.09002 * 109.63249 * 188.83118 * 27 13 12 44 44 H 1.09000 * 109.49299 * 292.70899 * 28 10 9 45 45 H 1.09000 * 109.49009 * 52.78794 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0031 0.4115 13 7 3.4617 -5.9862 -0.7533 14 6 3.7120 -7.1123 -1.4502 15 8 3.1135 -8.1369 -1.1854 16 6 4.7134 -7.1018 -2.5354 17 6 5.9033 -6.3725 -2.3987 18 6 6.8088 -6.3940 -3.4403 19 6 6.5143 -7.1328 -4.5823 20 7 7.4250 -7.1580 -5.6386 21 6 7.2744 -7.8309 -6.8099 22 6 8.3720 -7.5917 -7.5630 23 6 9.2247 -6.7569 -6.8307 24 7 8.6578 -6.4941 -5.6817 25 7 5.3789 -7.8073 -4.6830 26 6 4.4903 -7.8186 -3.7119 27 6 4.0838 -4.7090 -1.1339 28 6 2.9768 -3.6491 -1.2493 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 0.8797 -5.1264 -0.6111 33 1 0.9161 -4.8191 1.1422 34 1 2.0633 -6.9694 0.4740 35 1 3.1396 -5.8264 1.3201 36 1 6.1063 -5.8080 -1.5006 37 1 7.7354 -5.8437 -3.3699 38 1 6.4290 -8.4414 -7.0906 39 1 8.5590 -7.9785 -8.5538 40 1 10.1850 -6.3887 -7.1605 41 1 3.5778 -8.3843 -3.8286 42 1 4.8028 -4.4102 -0.3710 43 1 4.5887 -4.8191 -2.0936 44 1 2.3150 -3.8993 -2.0784 45 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827484826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 114.859943 kcal Electronic energy + Delta-G solvation = -28671.130146 eV Core-core repulsion = 24691.491254 eV Total energy + Delta-G solvation = -3979.638892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97045 -40.86708 -39.43871 -37.57092 -34.75376 -34.01318 -33.10036 -32.40894 -31.12380 -30.59568 -29.90379 -28.29556 -25.92239 -24.70902 -24.50170 -23.27873 -22.35450 -21.54901 -21.20494 -20.77874 -19.29126 -18.77815 -17.48472 -16.80675 -16.43124 -16.21364 -15.91325 -15.58325 -15.18327 -14.79121 -14.70572 -14.61482 -14.40184 -13.96831 -13.90945 -13.87657 -13.69231 -13.55186 -13.15100 -12.98693 -12.82270 -12.33925 -11.97488 -11.37527 -11.29772 -11.21264 -11.08078 -10.84131 -10.81245 -10.69157 -10.61397 -10.38854 -10.25630 -9.96698 -9.78000 -9.58004 -9.35325 -8.74191 -8.58467 -8.49747 -7.41427 -6.10814 -4.13365 0.02758 0.74001 1.55017 1.70047 2.36319 2.60525 2.90439 3.27564 3.32633 3.34460 3.40143 3.80189 4.06027 4.22252 4.34329 4.40231 4.50515 4.63592 4.67356 4.72398 5.00604 5.14656 5.22733 5.24227 5.28786 5.30359 5.39305 5.48462 5.51211 5.53715 5.57012 5.64412 5.76024 5.89745 5.94434 6.11127 6.20053 6.34652 6.37684 6.53720 6.63386 6.93126 7.14645 7.21355 7.33563 7.44825 7.67750 7.94300 8.02002 8.05375 8.40676 8.93226 9.51369 10.99884 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.002558 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.098297 B =10944.885057 C =12731.206075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.599 5.599 14 C 0.565 3.435 15 O -0.540 6.540 16 C -0.191 4.191 17 C -0.019 4.019 18 C -0.170 4.170 19 C 0.387 3.613 20 N -0.329 5.329 21 C 0.081 3.919 22 C -0.265 4.265 23 C 0.067 3.933 24 N -0.283 5.283 25 N -0.510 5.510 26 C 0.190 3.810 27 C 0.100 3.900 28 C 0.050 3.950 29 H 0.263 0.737 30 H -0.009 1.009 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.184 0.816 39 H 0.158 0.842 40 H 0.195 0.805 41 H 0.177 0.823 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.026 0.974 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.285 -15.558 -10.951 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.331 5.331 14 C 0.352 3.648 15 O -0.418 6.418 16 C -0.197 4.197 17 C -0.045 4.045 18 C -0.192 4.192 19 C 0.159 3.841 20 N -0.106 5.106 21 C -0.060 4.060 22 C -0.293 4.293 23 C -0.122 4.122 24 N -0.101 5.101 25 N -0.222 5.222 26 C 0.031 3.969 27 C -0.023 4.023 28 C -0.079 4.079 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.201 0.799 39 H 0.175 0.825 40 H 0.211 0.789 41 H 0.194 0.806 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.044 0.956 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.001 -15.737 -10.019 23.938 hybrid contribution -0.112 0.979 -0.824 1.285 sum 14.888 -14.758 -10.843 23.601 Atomic orbital electron populations 1.69943 1.06099 1.27043 1.50519 1.24994 0.94870 0.99372 0.95295 0.86553 0.79448 0.82703 0.78662 1.20254 1.21331 1.20104 1.21084 0.93395 0.89858 1.50703 0.91863 1.19728 0.89970 0.87090 0.96292 1.62099 1.28152 1.02773 1.33031 1.22412 0.94931 0.90448 1.01139 1.21838 0.91707 0.99851 0.86965 1.48141 1.46554 1.08240 1.30153 1.17913 0.81973 0.83534 0.81353 1.90786 1.50874 1.31856 1.68295 1.20969 0.97522 1.03227 0.98023 1.21879 0.90957 0.93147 0.98545 1.21550 1.02635 1.02369 0.92629 1.17870 0.87156 0.93310 0.85729 1.45778 1.14568 1.38015 1.12272 1.22994 1.00592 0.96828 0.85591 1.21713 0.96000 1.08248 1.03322 1.24226 1.00256 0.96600 0.91160 1.77487 0.92352 1.18373 1.21894 1.66941 1.01774 1.21474 1.32058 1.22623 0.96151 0.92313 0.85814 1.22464 0.96695 0.82601 1.00537 1.22413 0.95018 0.98922 0.91539 0.92756 0.99084 0.94930 0.95385 0.89845 0.89094 0.90534 0.82655 0.82673 0.79875 0.82480 0.78858 0.80603 0.90110 0.89901 0.95579 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.64 8.41 -34.44 -0.29 -13.93 16 8 H 0.06 1.64 7.13 -52.49 -0.37 1.26 16 9 C 0.19 4.80 4.72 -4.97 -0.02 4.78 16 10 N -0.54 -10.65 4.62 -235.47 -1.09 -11.73 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 C 0.12 1.71 6.61 -3.60 -0.02 1.69 16 13 N -0.60 -8.39 3.00 -173.36 -0.52 -8.91 16 14 C 0.57 7.96 7.36 -12.41 -0.09 7.87 16 15 O -0.54 -9.04 16.37 5.30 0.09 -8.96 16 16 C -0.19 -2.25 5.17 -104.81 -0.54 -2.79 16 17 C -0.02 -0.19 7.52 -38.91 -0.29 -0.48 16 18 C -0.17 -1.75 9.68 -39.31 -0.38 -2.13 16 19 C 0.39 4.47 7.55 -154.49 -1.17 3.31 16 20 N -0.33 -3.66 3.80 -12.10 -0.05 -3.70 16 21 C 0.08 0.73 11.09 -16.81 -0.19 0.54 16 22 C -0.26 -1.92 10.80 -39.99 -0.43 -2.35 16 23 C 0.07 0.52 12.02 -17.33 -0.21 0.31 16 24 N -0.28 -3.03 11.81 30.65 0.36 -2.67 16 25 N -0.51 -5.91 9.83 -11.99 -0.12 -6.03 16 26 C 0.19 2.16 10.79 -17.14 -0.19 1.97 16 27 C 0.10 1.32 5.04 -3.37 -0.02 1.30 16 28 C 0.05 0.88 5.47 -3.47 -0.02 0.86 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.37 7.99 -51.93 -0.41 0.96 16 34 H 0.09 1.29 7.04 -51.93 -0.37 0.93 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.16 1.28 6.48 -52.48 -0.34 0.94 16 37 H 0.16 1.44 7.67 -52.49 -0.40 1.04 16 38 H 0.18 1.32 8.05 -52.49 -0.42 0.90 16 39 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.19 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.18 1.77 8.05 -52.49 -0.42 1.35 16 42 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 43 H 0.08 0.94 4.85 -51.93 -0.25 0.69 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -32.77 373.80 -9.79 -42.56 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.84 Total: 0.09 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.97 Total: 3.06 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.67 Total: -58.26 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.77 -9.79 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.420 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds