Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99760 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99449 * 3 2 1 5 5 H 1.48497 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46844 * 119.99867 * 3 2 1 7 7 C 1.37877 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99849 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46731 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99550 * 169.99892 * 10 9 7 12 12 C 1.53235 * 109.33718 * 187.25391 * 11 10 9 13 13 N 1.47081 * 108.52223 * 306.17155 * 12 11 10 14 14 C 1.34778 * 120.87845 * 231.18698 * 13 12 11 15 15 O 1.21574 * 120.00571 * 5.80398 * 14 13 12 16 16 C 1.47671 * 119.99743 * 185.80424 * 14 13 12 17 17 C 1.40228 * 120.49737 * 38.85893 * 16 14 13 18 18 C 1.38032 * 118.35743 * 179.97438 * 17 16 14 19 19 C 1.39159 * 119.25391 * 359.97438 * 18 17 16 20 20 N 1.39494 * 119.52709 * 179.97438 * 19 18 17 21 21 C 1.35920 * 126.10231 * 180.02562 * 20 19 18 22 22 C 1.35242 * 107.60338 * 179.70924 * 21 20 19 23 23 C 1.40008 * 107.96705 * 0.43192 * 22 21 20 24 24 N 1.30792 * 108.38116 * 359.56062 * 23 22 21 25 25 N 1.32442 * 120.94189 * 0.28415 * 19 18 17 26 26 C 1.31634 * 121.80049 * 359.42746 * 25 19 18 27 27 C 1.47074 * 118.23956 * 51.45731 * 13 12 11 28 28 C 1.46895 * 111.00273 * 294.30083 * 10 9 7 29 29 H 0.96999 * 120.00150 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47028 * 60.00058 * 9 7 2 31 31 H 1.08999 * 109.46612 * 299.99679 * 9 7 2 32 32 H 1.08993 * 109.49145 * 67.29677 * 11 10 9 33 33 H 1.08997 * 109.49281 * 307.21222 * 11 10 9 34 34 H 1.09000 * 109.63016 * 186.46263 * 12 11 10 35 35 H 1.09004 * 109.63318 * 65.87654 * 12 11 10 36 36 H 1.08003 * 120.82271 * 359.97438 * 17 16 14 37 37 H 1.08001 * 120.37237 * 179.97438 * 18 17 16 38 38 H 1.07999 * 126.19624 * 0.02562 * 21 20 19 39 39 H 1.07994 * 126.01884 * 180.29012 * 22 21 20 40 40 H 1.08008 * 125.80816 * 179.82693 * 23 22 21 41 41 H 1.07996 * 119.67936 * 180.29352 * 26 25 19 42 42 H 1.09005 * 109.63075 * 68.25492 * 27 13 12 43 43 H 1.09002 * 109.63249 * 188.83118 * 27 13 12 44 44 H 1.09000 * 109.49299 * 292.70899 * 28 10 9 45 45 H 1.09000 * 109.49009 * 52.78794 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8935 0.2387 12 6 2.5638 -6.0031 0.4115 13 7 3.4617 -5.9862 -0.7533 14 6 3.7120 -7.1123 -1.4502 15 8 3.1135 -8.1369 -1.1854 16 6 4.7134 -7.1018 -2.5354 17 6 5.9033 -6.3725 -2.3987 18 6 6.8088 -6.3940 -3.4403 19 6 6.5143 -7.1328 -4.5823 20 7 7.4250 -7.1580 -5.6386 21 6 7.2744 -7.8309 -6.8099 22 6 8.3720 -7.5917 -7.5630 23 6 9.2247 -6.7569 -6.8307 24 7 8.6578 -6.4941 -5.6817 25 7 5.3789 -7.8073 -4.6830 26 6 4.4903 -7.8186 -3.7119 27 6 4.0838 -4.7090 -1.1339 28 6 2.9768 -3.6491 -1.2493 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 0.8797 -5.1264 -0.6111 33 1 0.9161 -4.8191 1.1422 34 1 2.0633 -6.9694 0.4740 35 1 3.1396 -5.8264 1.3201 36 1 6.1063 -5.8080 -1.5006 37 1 7.7354 -5.8437 -3.3699 38 1 6.4290 -8.4414 -7.0906 39 1 8.5590 -7.9785 -8.5538 40 1 10.1850 -6.3887 -7.1605 41 1 3.5778 -8.3843 -3.8286 42 1 4.8028 -4.4102 -0.3710 43 1 4.5887 -4.8191 -2.0936 44 1 2.3150 -3.8993 -2.0784 45 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827484826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 93.963317 kcal Electronic energy + Delta-G solvation = -28672.036292 eV Core-core repulsion = 24691.491254 eV Total energy + Delta-G solvation = -3980.545038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.68018 -41.80410 -40.46823 -38.94896 -36.14994 -34.98454 -34.38315 -33.81367 -32.24740 -31.41054 -30.75506 -29.91602 -27.46151 -25.73421 -25.42429 -24.50217 -23.86338 -22.62911 -22.00259 -21.78193 -20.45760 -19.51373 -18.57315 -18.49047 -17.71020 -17.31242 -16.77048 -16.61805 -16.35698 -16.21821 -16.00612 -15.61148 -15.42928 -15.35971 -15.22382 -14.74131 -14.69651 -14.37474 -14.29908 -13.96314 -13.84563 -13.70102 -13.52681 -13.04806 -12.78814 -12.60755 -12.46210 -12.35417 -12.17592 -11.94771 -11.80525 -11.59795 -11.32949 -11.30900 -11.08620 -10.81424 -10.61106 -10.28117 -9.87503 -9.40975 -9.09202 -8.20344 -6.30753 -0.79397 -0.06061 0.82005 1.00131 1.43505 1.46114 1.53801 1.55392 1.80076 1.82738 2.40719 2.53709 3.04471 3.11900 3.18672 3.25235 3.34537 3.59572 3.77470 3.87987 3.98933 4.02572 4.04486 4.20987 4.21275 4.37166 4.38498 4.50715 4.55061 4.62702 4.70180 4.73687 4.78731 4.82473 4.91315 4.98038 5.01813 5.12420 5.18195 5.22148 5.37410 5.56304 5.63268 5.93157 6.01446 6.14171 6.22751 6.30890 6.54012 6.69341 6.84932 6.90863 7.39321 8.90759 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.002558 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.098297 B =10944.885057 C =12731.206075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.128 3.872 13 N -0.601 5.601 14 C 0.571 3.429 15 O -0.569 6.569 16 C -0.205 4.205 17 C -0.007 4.007 18 C -0.170 4.170 19 C 0.378 3.622 20 N -0.347 5.347 21 C 0.058 3.942 22 C -0.254 4.254 23 C 0.072 3.928 24 N -0.316 5.316 25 N -0.519 5.519 26 C 0.188 3.812 27 C 0.113 3.887 28 C 0.049 3.951 29 H 0.264 0.736 30 H -0.043 1.043 31 H 0.007 0.993 32 H 0.014 0.986 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.193 0.807 39 H 0.187 0.813 40 H 0.230 0.770 41 H 0.182 0.818 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.010 0.990 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.415 -15.514 -11.817 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.088 4.088 12 C 0.006 3.994 13 N -0.333 5.333 14 C 0.359 3.641 15 O -0.450 6.450 16 C -0.211 4.211 17 C -0.033 4.033 18 C -0.193 4.193 19 C 0.151 3.849 20 N -0.125 5.125 21 C -0.081 4.081 22 C -0.281 4.281 23 C -0.117 4.117 24 N -0.135 5.135 25 N -0.233 5.233 26 C 0.029 3.971 27 C -0.009 4.009 28 C -0.080 4.080 29 H 0.072 0.928 30 H -0.025 1.025 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.195 0.805 37 H 0.183 0.817 38 H 0.210 0.790 39 H 0.205 0.795 40 H 0.246 0.754 41 H 0.199 0.801 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.029 0.971 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.165 -15.714 -10.905 26.379 hybrid contribution -1.044 0.891 -0.684 1.533 sum 17.122 -14.824 -11.590 25.440 Atomic orbital electron populations 1.70089 1.07892 1.27962 1.51761 1.25938 0.95678 1.03323 0.94841 0.85431 0.78103 0.77804 0.79271 1.19012 1.21397 1.19091 1.21435 0.93880 0.90635 1.50016 0.91060 1.19379 0.90098 0.88937 0.93414 1.62034 1.26989 1.02597 1.34391 1.22465 0.95734 0.90006 1.00598 1.21722 0.91278 0.98581 0.87854 1.48178 1.46498 1.08578 1.30035 1.18148 0.81799 0.82883 0.81223 1.90770 1.52191 1.32892 1.69119 1.20788 0.97859 1.04883 0.97556 1.22047 0.89879 0.92352 0.99031 1.21674 1.03025 1.02286 0.92272 1.18190 0.87197 0.93105 0.86432 1.45935 1.14863 1.38967 1.12712 1.23411 1.01799 0.97340 0.85541 1.22133 0.94863 1.07045 1.04096 1.24942 1.01166 0.95475 0.90132 1.77460 0.92703 1.19650 1.23640 1.66973 1.02090 1.22048 1.32153 1.22752 0.96387 0.92137 0.85808 1.22441 0.95094 0.80729 1.02642 1.22459 0.95610 1.00088 0.89859 0.92770 1.02523 0.97527 0.96797 0.89718 0.88695 0.88937 0.80531 0.81650 0.79016 0.79547 0.75386 0.80080 0.87975 0.87554 0.97135 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.50 13.29 21.45 0.28 -55.22 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 42.68 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.52 -28.09 8.41 25.60 0.22 -27.88 16 8 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 9 C 0.21 10.69 4.72 85.56 0.40 11.10 16 10 N -0.54 -21.51 4.62 -898.89 -4.15 -25.67 16 11 C 0.04 1.41 5.62 86.38 0.49 1.90 16 12 C 0.13 3.56 6.61 86.35 0.57 4.13 16 13 N -0.60 -15.96 3.00 -820.65 -2.46 -18.43 16 14 C 0.57 15.43 7.36 86.73 0.64 16.07 16 15 O -0.57 -18.77 16.37 -3.95 -0.06 -18.83 16 16 C -0.20 -4.55 5.17 -19.98 -0.10 -4.65 16 17 C -0.01 -0.13 7.52 22.70 0.17 0.04 16 18 C -0.17 -3.22 9.68 22.44 0.22 -3.00 16 19 C 0.38 8.38 7.55 132.89 1.00 9.38 16 20 N -0.35 -7.31 3.80 -192.18 -0.73 -8.04 16 21 C 0.06 0.97 11.09 83.37 0.92 1.90 16 22 C -0.25 -3.02 10.80 22.01 0.24 -2.78 16 23 C 0.07 0.92 12.02 85.28 1.02 1.94 16 24 N -0.32 -6.25 11.81 -56.95 -0.67 -6.92 16 25 N -0.52 -11.72 9.83 -191.84 -1.88 -13.61 16 26 C 0.19 4.16 10.79 85.04 0.92 5.08 16 27 C 0.11 2.76 5.04 86.50 0.44 3.20 16 28 C 0.05 1.70 5.47 86.54 0.47 2.17 16 29 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 30 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 31 H 0.01 0.37 7.97 -2.39 -0.02 0.35 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 2.86 7.99 -2.39 -0.02 2.84 16 34 H 0.09 2.62 7.04 -2.39 -0.02 2.60 16 35 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.18 2.32 6.48 -2.91 -0.02 2.30 16 37 H 0.17 2.76 7.67 -2.91 -0.02 2.74 16 38 H 0.19 2.60 8.05 -2.91 -0.02 2.58 16 39 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.23 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.18 3.64 8.05 -2.91 -0.02 3.62 16 42 H 0.10 2.15 8.05 -2.38 -0.02 2.13 16 43 H 0.11 2.15 4.85 -2.39 -0.01 2.13 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.09 3.23 6.67 -2.39 -0.02 3.22 16 Total: -1.00 -72.48 373.80 1.44 -71.04 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.02 Total: 11.89 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 8.08 Total: 19.07 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -9.62 Total: -127.88 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.06 Total: -18.83 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.48 1.44 -71.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.006 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds